Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65230 182 / 6e-57 MYB ATMYB53 myb domain protein 53 (.1) AT3G02940 181 / 3e-56 MYB ATMYB107 myb domain protein 107 (.1) AT1G34670 181 / 5e-56 MYB ATMYB93 myb domain protein 93 (.1) AT5G16770 178 / 4e-55 MYB ATMYB9 myb domain protein 9 (.1.2) AT4G28110 177 / 4e-55 MYB ATMYB41 myb domain protein 41 (.1) AT4G21440 178 / 6e-55 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 102 (.1) AT5G60890 176 / 9e-55 MYB AtMYB34, MYB34, ATR1 ALTERED TRYPTOPHAN REGULATION 1, myb domain protein 34 (.1) AT5G10280 172 / 8e-53 MYB ATMYB92, AtMYB64 myb domain protein 92 (.1) AT4G17785 173 / 9e-53 MYB ATMYB39 myb domain protein 39 (.1) AT5G07690 171 / 2e-52 MYB PMG2, ATMYB29 PRODUCTION OF METHIONINE-DERIVED GLUCOSINOLATE 2, myb domain protein 29 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039735 [exp] 315 / 5e-110 AT5G65230 176 / 5e-54 myb domain protein 53 (.1) Lus10033738 [exp] 225 / 3e-74 AT4G28110 184 / 2e-57 myb domain protein 41 (.1) Lus10031607 [exp] 222 / 3e-73 AT4G28110 182 / 2e-56 myb domain protein 41 (.1) Lus10039771 [exp] 183 / 3e-58 AT1G34670 184 / 5e-57 myb domain protein 93 (.1) Lus10018547 [exp] 183 / 8e-58 AT4G21440 179 / 2e-54 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10039772 [exp] 182 / 1e-57 AT4G21440 175 / 5e-53 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10018546 [exp] 177 / 6e-56 AT1G34670 176 / 2e-53 myb domain protein 93 (.1) Lus10018545 [exp] 177 / 2e-55 AT1G34670 159 / 1e-47 myb domain protein 93 (.1) Lus10042561 [exp] 174 / 6e-55 AT3G23250 206 / 5e-67 myb domain protein 15 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G149200 [exp] 210 / 1e-68 AT2G31180 193 / 3e-61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Potri.019G118900 [exp] 196 / 6e-63 AT2G31180 194 / 7e-62 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Potri.013G149100 [exp] 187 / 3e-59 AT3G23250 176 / 4e-54 myb domain protein 15 (.1.2) Potri.019G118700 [exp] 182 / 2e-57 AT5G16770 170 / 4e-51 myb domain protein 9 (.1.2) Potri.007G093900 [exp] 183 / 8e-57 AT1G34670 289 / 6e-96 myb domain protein 93 (.1) Potri.019G118800 [exp] 181 / 8e-57 AT1G16490 174 / 2e-53 myb domain protein 58 (.1) Potri.005G074500 [exp] 182 / 2e-56 AT1G34670 290 / 1e-96 myb domain protein 93 (.1) Potri.011G125900 [exp] 181 / 8e-56 AT4G21440 281 / 1e-92 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.005G164900 [exp] 180 / 1e-55 AT1G34670 309 / 7e-104 myb domain protein 93 (.1) Potri.019G118200 [exp] 179 / 3e-55 AT4G05100 278 / 7e-92 myb domain protein 74 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10039734 pacid=23165131 polypeptide=Lus10039734 locus=Lus10039734.g ID=Lus10039734.BGIv1.0 annot-version=v1.0 ATGAGAACGCCTTCCTGTGACGAGAACGGAATGCGAAAGGGGACTTGGACCGCCGAGGAAGACAGGAAACTGATCGCTTATGTCACCCGCTATGGGTGCT GGAACTGGCGCCAGCTCCCCAAGTTCGCGGGATTGAAAAGATGTGGGAAGAGCTGTCGGTTGAGGTGGATGAACTATCTCCGACCGGATATCAAAAGAGG GAACTACAGCGCGGAAGAGGAAGAAACCATCCTCCGCCTCCACGCCTCCTTAGGAAACAAATGGTCGGTTATCGCGGCACATCTTCCAGGGAGGGCAGAC AACGAGATAAAAAACTATTGGCACACTAACCTCAAAAATAGTCCCAAGCAACAATCGTTGATCGACATTACAATGTTGCCTGCAGAAGAGGAAGTTCAAG CTGTTGAGACTAACAATCTGTTACAGTCGCCTGATCAGAGTGAGACATCCTCTTCTTTATCTTCCTCGTTCGGATTAGGCAACGAGGCAGCATCGGTGGC AGCTTGTTCGGAGTTTCTGATGTCGGATTCAAACTGTTTCGAGGATGTATTATGGGAGGCTGAAGCAGCTGCTGCTGCTGCAACCACAGCGGCGGGGGGG GGGTTTTATGTACGGAGTTTATTATGA
AA sequence Show only first row Show all	>Lus10039734 pacid=23165131 polypeptide=Lus10039734 locus=Lus10039734.g ID=Lus10039734.BGIv1.0 annot-version=v1.0 MRTPSCDENGMRKGTWTAEEDRKLIAYVTRYGCWNWRQLPKFAGLKRCGKSCRLRWMNYLRPDIKRGNYSAEEEETILRLHASLGNKWSVIAAHLPGRAD NEIKNYWHTNLKNSPKQQSLIDITMLPAEEEVQAVETNNLLQSPDQSETSSSLSSSFGLGNEAASVAACSEFLMSDSNCFEDVLWEAEAAAAAATTAAGG GFYVRSLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65230	MYB	ATMYB53	myb domain protein 53 (.1)		Lus10039734 [exp]	0	1
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Lus10018418 [exp]	1.0	0.8198
AT4G23020			unknown protein		Lus10029604 [exp]	44.2	0.7473
AT3G62830		ATUXS2, UXS2, A...	UDP-GLUCURONIC ACID DECARBOXYL...		Lus10006510 [exp]	66.0	0.7164
					Lus10025086 [exp]	73.9	0.7317
AT3G07470			Protein of unknown function, D...		Lus10025861 [exp]	101.3	0.6714
AT1G14390			Leucine-rich repeat protein ki...		Lus10013262 [exp]	101.9	0.7296
AT2G24450		FLA3	FASCICLIN-like arabinogalactan...		Lus10026957 [exp]	114.1	0.6840
AT5G07050			nodulin MtN21 /EamA-like trans...		Lus10026113 [exp]	122.3	0.6853
AT5G40830		ATRAD3, ATATR	S-adenosyl-L-methionine-depend...		Lus10007588 [exp]	178.3	0.6795
AT1G69550			disease resistance protein (TI...		Lus10020237 [exp]	207.8	0.6706

Compare expression of checked genes

Lus10039734 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.