Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16490 66 / 1e-12 MYB ATMYB58 myb domain protein 58 (.1) AT3G23250 64 / 3e-12 MYB ATMYB15, ATY19 myb domain protein 15 (.1.2) AT3G12820 61 / 3e-11 MYB ATMYB10 myb domain protein 10 (.1) AT5G60890 60 / 1e-10 MYB AtMYB34, MYB34, ATR1 ALTERED TRYPTOPHAN REGULATION 1, myb domain protein 34 (.1) AT5G65790 60 / 1e-10 MYB AtMYB68 myb domain protein 68 (.1) AT1G06180 58 / 3e-10 MYB ATMYB13, AtMYBlfgn myb domain protein 13 (.1) AT3G49690 58 / 6e-10 MYB ATMYB84, RAX3 REGULATOR OF AXILLARY MERISTEMS3, myb domain protein 84 (.1) AT3G48920 57 / 7e-10 MYB ATMYB45 myb domain protein 45 (.1) AT1G56160 57 / 9e-10 MYB ATMYB72 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 72, myb domain protein 72 (.1) AT2G31180 57 / 1e-09 MYB ATMYB14, Myb14at ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018518 [exp] 181 / 1e-56 AT1G79180 167 / 6e-51 myb domain protein 63 (.1) Lus10018525 [exp] 71 / 1e-14 AT4G21440 218 / 1e-69 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10033737 [exp] 69 / 1e-13 AT4G21440 168 / 6e-49 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10027456 [exp] 62 / 2e-11 AT5G52260 184 / 2e-56 myb domain protein 19 (.1) Lus10003557 [exp] 61 / 6e-11 AT3G23250 239 / 4e-78 myb domain protein 15 (.1.2) Lus10021185 [exp] 60 / 1e-10 AT3G23250 231 / 1e-75 myb domain protein 15 (.1.2) Lus10011820 [exp] 60 / 1e-10 AT3G23250 225 / 2e-73 myb domain protein 15 (.1.2) Lus10036336 [exp] 60 / 1e-10 AT2G47460 225 / 9e-71 PRODUCTION OF FLAVONOL GLYCOSIDES 1, myb domain protein 12 (.1) Lus10005740 [exp] 59 / 2e-10 AT5G52260 194 / 3e-61 myb domain protein 19 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G224100 [exp] 66 / 1e-12 AT3G23250 255 / 1e-84 myb domain protein 15 (.1.2) Potri.002G038500 [exp] 65 / 1e-12 AT2G31180 238 / 1e-78 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Potri.019G118800 [exp] 65 / 2e-12 AT1G16490 174 / 2e-53 myb domain protein 58 (.1) Potri.013G149200 [exp] 62 / 2e-11 AT2G31180 193 / 3e-61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Potri.008G166700 [exp] 60 / 1e-10 AT3G23250 237 / 2e-77 myb domain protein 15 (.1.2) Potri.002G113700 [exp] 60 / 2e-10 AT3G49690 239 / 5e-77 REGULATOR OF AXILLARY MERISTEMS3, myb domain protein 84 (.1) Potri.007G007900 [exp] 60 / 2e-10 AT3G49690 253 / 1e-82 REGULATOR OF AXILLARY MERISTEMS3, myb domain protein 84 (.1) Potri.019G018200 [exp] 59 / 2e-10 AT2G31180 223 / 1e-73 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Potri.019G118900 [exp] 59 / 2e-10 AT2G31180 194 / 7e-62 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Potri.005G096600 [exp] 59 / 3e-10 AT1G16490 232 / 1e-74 myb domain protein 58 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10039736 pacid=23165273 polypeptide=Lus10039736 locus=Lus10039736.g ID=Lus10039736.BGIv1.0 annot-version=v1.0 ATGGTGAGAGGAGCTTTCTACGACAAGAATGGAGTGAAGAAAGGCGCGTGGAGCAGAGAAGAGGACGACAAGCTACGCGCCTACATTGCTAGATGGTCTG CCATTGCTTCAAAAATGTCAGGAAGAACGGACAACGAAATAAAAAATTATTGGCACGCACATCTCAAGAAAAGAGTAACAACAAAACAGAGGATGCCCGC CGGTGAGAGCCAGAGCAGCAACAAGTCATCACTACCAACCTCGTCGTGTTCATCAGATCTACAAAATTCCGCCAGTCAAAGTCAGGTTCAAACGTCTCAA GTGAAAGAAACGTTAATACTGGAGAGCTCCCAATCATCGCCGCCGGAAACCTCCTCCTACGCTTCCGGCGGGGAGTCTTCTGCGGCTGCCGTAGGTAGAT GGGAAAACTGTACAATTGACGGCGACAGCAATAGTGGTGGTTGTTGTCATTATGATGATGGTGGAGATTTCTGGACGGAGCCGTTTGTGGTGGAAAGTAG TATTAGTAACGGCGGCGGCGGCAACGGCAGTAGTTGCGCCGGCGATCTGCCGTTTTGGTGGATGGGAGGGGAATATATGACGTGGCCAGATGAGTTTTTG TTGGATAATGATGAGGTAGATGGTCTGATGTATGGGTTGCACTAG
AA sequence Show only first row Show all	>Lus10039736 pacid=23165273 polypeptide=Lus10039736 locus=Lus10039736.g ID=Lus10039736.BGIv1.0 annot-version=v1.0 MVRGAFYDKNGVKKGAWSREEDDKLRAYIARWSAIASKMSGRTDNEIKNYWHAHLKKRVTTKQRMPAGESQSSNKSSLPTSSCSSDLQNSASQSQVQTSQ VKETLILESSQSSPPETSSYASGGESSAAAVGRWENCTIDGDSNSGGCCHYDDGGDFWTEPFVVESSISNGGGGNGSSCAGDLPFWWMGGEYMTWPDEFL LDNDEVDGLMYGLH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10039736 [exp]	0	1
AT2G28490			RmlC-like cupins superfamily p...		Lus10011364 [exp]	1.0	0.9846
AT1G51460		ABCG13	ATP-binding cassette G13, ABC-...		Lus10000339 [exp]	2.4	0.9759
AT5G53950	NAC	ATCUC2, CUC2, A...	CUP-SHAPED COTYLEDON 2, Arabid...		Lus10041924 [exp]	2.4	0.9832
AT1G79180	MYB	ATMYB63	myb domain protein 63 (.1)		Lus10018518 [exp]	3.5	0.9722
AT5G61120			unknown protein		Lus10035396 [exp]	4.6	0.9681
AT2G35160		SGD9, SUVH5	SET DOMAIN-CONTAINING PROTEIN ...		Lus10040150 [exp]	4.9	0.9624
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Lus10040333 [exp]	6.6	0.9628
AT3G06520			agenet domain-containing prote...		Lus10017088 [exp]	7.1	0.9642
					Lus10006724 [exp]	8.1	0.9700
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Lus10023458 [exp]	10.4	0.9698

Compare expression of checked genes

Lus10039736 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.