Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21440 285 / 4e-96 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 102 (.1) AT4G28110 258 / 2e-86 MYB ATMYB41 myb domain protein 41 (.1) AT4G05100 251 / 5e-83 MYB ATMYB74 myb domain protein 74 (.1) AT5G16770 233 / 8e-76 MYB ATMYB9 myb domain protein 9 (.1.2) AT5G54230 230 / 4e-75 MYB ATMYB49 myb domain protein 49 (.1) AT3G02940 228 / 3e-74 MYB ATMYB107 myb domain protein 107 (.1) AT1G34670 225 / 2e-72 MYB ATMYB93 myb domain protein 93 (.1) AT5G15310 223 / 3e-72 MYB ATMYB16, ATMIXTA myb domain protein 16 (.1.2) AT4G17785 218 / 9e-70 MYB ATMYB39 myb domain protein 39 (.1) AT3G01140 217 / 4e-69 MYB NOK, ATMYB106 NOECK, myb domain protein 106 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020085 [exp] 265 / 2e-88 AT4G21440 315 / 2e-106 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10006740 [exp] 264 / 1e-86 AT4G21440 317 / 6e-106 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10018525 [exp] 254 / 1e-85 AT4G21440 218 / 1e-69 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10018418 [exp] 249 / 4e-82 AT4G21440 334 / 5e-114 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10002593 [exp] 243 / 5e-80 AT4G21440 330 / 2e-112 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10033003 [exp] 224 / 7e-72 AT5G15310 323 / 2e-109 myb domain protein 16 (.1.2) Lus10036472 [exp] 219 / 2e-70 AT5G10280 307 / 1e-103 myb domain protein 92 (.1) Lus10041142 [exp] 218 / 4e-70 AT1G34670 315 / 2e-106 myb domain protein 93 (.1) Lus10014784 [exp] 210 / 2e-67 AT3G61250 342 / 1e-118 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G118200 [exp] 300 / 5e-102 AT4G05100 278 / 7e-92 myb domain protein 74 (.1) Potri.013G148600 [exp] 271 / 2e-90 AT4G21440 269 / 4e-88 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.004G033100 [exp] 262 / 9e-87 AT4G21440 293 / 4e-97 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.011G041600 [exp] 258 / 4e-85 AT4G21440 311 / 2e-104 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.001G408700 [exp] 256 / 7e-85 AT4G21440 275 / 1e-90 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.011G125900 [exp] 244 / 5e-80 AT4G21440 281 / 1e-92 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.007G093900 [exp] 229 / 3e-74 AT1G34670 289 / 6e-96 myb domain protein 93 (.1) Potri.005G074500 [exp] 228 / 6e-74 AT1G34670 290 / 1e-96 myb domain protein 93 (.1) Potri.005G164900 [exp] 226 / 4e-73 AT1G34670 309 / 7e-104 myb domain protein 93 (.1) Potri.017G086300 [exp] 225 / 5e-72 AT5G15310 343 / 6e-117 myb domain protein 16 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10039743 pacid=23165009 polypeptide=Lus10039743 locus=Lus10039743.g ID=Lus10039743.BGIv1.0 annot-version=v1.0 ATGGGAAGAACTCCTTGTTGTGACAAGAATGGCCTAAAGAAAGGTCCATGGACTACTGAAGAAGACCAGAAGCTCACTTCCTTCATTCAACTCCACGGCC CCGGCAACTGGCGCACCCTCCCCAAAAATGCTGGTCTTCAGAGATGCGGAAAGAGCTGTCGTCTGAGGTGGACGAATTATTTGCGACCTGACATCAGGCG AGGTCGGTTTTCGTTCGAGGAGGAAGAGACCATCATCCAGCTCCATAGCATCCTCGGTAACAAGTGGTCTGCGATAGCAGCCCGGCTGCCAGGAAGAACG GACAACGAGATTAAGAACTATTGGAACACACACATCAGGAAGAGGCTACTCCGTAACGGGATCGACCCGGTGACTCACGCGCCTCGCCTCGACGTTCTAG ACCTCTCCGCAATACTCGGCTCTGCCCTATGCCACGTCACTCCCGCCGCATCTCTCCTCAGCCTCCTCGCCGGCGCTGGCCAGGCTCAGCAGCAGCAGCT TTTCAACCCGGAGCTCCTCCGCCTCGCCGCTGCGCTGGGGTCGTTGAACCAGCAGCAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNGACGGCGGCGGGTGCTTGA
AA sequence Show only first row Show all	>Lus10039743 pacid=23165009 polypeptide=Lus10039743 locus=Lus10039743.g ID=Lus10039743.BGIv1.0 annot-version=v1.0 MGRTPCCDKNGLKKGPWTTEEDQKLTSFIQLHGPGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIRRGRFSFEEEETIIQLHSILGNKWSAIAARLPGRT DNEIKNYWNTHIRKRLLRNGIDPVTHAPRLDVLDLSAILGSALCHVTPAASLLSLLAGAGQAQQQQLFNPELLRLAAALGSLNQQQXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAGA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Lus10039743 [exp]	0	1
AT3G22600			Bifunctional inhibitor/lipid-t...		Lus10039349 [exp]	1.4	0.9425
AT1G16770			unknown protein		Lus10037300 [exp]	2.4	0.9200
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Lus10018525 [exp]	4.6	0.9039
AT1G06520		ATGPAT1, GPAT1	glycerol-3-phosphate acyltrans...		Lus10020767 [exp]	5.0	0.9293
AT3G47570			Leucine-rich repeat protein ki...		Lus10003072 [exp]	5.3	0.9104
AT1G54540			Late embryogenesis abundant (L...		Lus10031888 [exp]	6.5	0.9332
					Lus10009436 [exp]	7.4	0.9168
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10003262 [exp]	7.5	0.8895
AT4G23990		ATCSLG3	ARABIDOPSIS THALIANA CELLULOSE...		Lus10032415 [exp]	7.5	0.9199
					Lus10031407 [exp]	7.7	0.9299

Compare expression of checked genes

Lus10039743 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.