Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34670 184 / 5e-57 MYB ATMYB93 myb domain protein 93 (.1) AT5G10280 181 / 5e-56 MYB ATMYB92, AtMYB64 myb domain protein 92 (.1) AT5G65230 180 / 6e-56 MYB ATMYB53 myb domain protein 53 (.1) AT3G02940 180 / 7e-56 MYB ATMYB107 myb domain protein 107 (.1) AT5G16770 179 / 4e-55 MYB ATMYB9 myb domain protein 9 (.1.2) AT4G21440 179 / 7e-55 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 102 (.1) AT5G15310 175 / 5e-54 MYB ATMYB16, ATMIXTA myb domain protein 16 (.1.2) AT4G28110 173 / 1e-53 MYB ATMYB41 myb domain protein 41 (.1) AT2G31180 172 / 2e-53 MYB ATMYB14, Myb14at ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) AT3G23250 172 / 3e-53 MYB ATMYB15, ATY19 myb domain protein 15 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018546 [exp] 390 / 1e-139 AT1G34670 176 / 2e-53 myb domain protein 93 (.1) Lus10018547 [exp] 238 / 2e-79 AT4G21440 179 / 2e-54 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10039772 [exp] 224 / 7e-74 AT4G21440 175 / 5e-53 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10018545 [exp] 214 / 2e-69 AT1G34670 159 / 1e-47 myb domain protein 93 (.1) Lus10039734 [exp] 184 / 8e-59 AT5G65230 183 / 2e-57 myb domain protein 53 (.1) Lus10036472 [exp] 183 / 5e-57 AT5G10280 307 / 1e-103 myb domain protein 92 (.1) Lus10041142 [exp] 183 / 5e-57 AT1G34670 315 / 2e-106 myb domain protein 93 (.1) Lus10031607 [exp] 181 / 7e-57 AT4G28110 182 / 2e-56 myb domain protein 41 (.1) Lus10033738 [exp] 180 / 2e-56 AT4G28110 184 / 2e-57 myb domain protein 41 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G118900 [exp] 192 / 2e-61 AT2G31180 194 / 7e-62 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Potri.005G164900 [exp] 187 / 2e-58 AT1G34670 309 / 7e-104 myb domain protein 93 (.1) Potri.013G149200 [exp] 184 / 3e-58 AT2G31180 193 / 3e-61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Potri.005G074500 [exp] 184 / 4e-57 AT1G34670 290 / 1e-96 myb domain protein 93 (.1) Potri.002G096800 [exp] 182 / 2e-56 AT1G34670 305 / 2e-102 myb domain protein 93 (.1) Potri.007G093900 [exp] 182 / 3e-56 AT1G34670 289 / 6e-96 myb domain protein 93 (.1) Potri.004G033100 [exp] 182 / 4e-56 AT4G21440 293 / 4e-97 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.019G118800 [exp] 178 / 1e-55 AT1G16490 174 / 2e-53 myb domain protein 58 (.1) Potri.019G118200 [exp] 180 / 3e-55 AT4G05100 278 / 7e-92 myb domain protein 74 (.1) Potri.011G041600 [exp] 179 / 8e-55 AT4G21440 311 / 2e-104 A. THALIANA MYB 4, MYB-like 102 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10039771 pacid=23165161 polypeptide=Lus10039771 locus=Lus10039771.g ID=Lus10039771.BGIv1.0 annot-version=v1.0 ATGGCGAGGACTCCTTACGTGGATAGGAACGGGTTGAAGAAGGGAACCTGGACTCCTGAGGAAGACATGAGGCTTGTAGAGTATATTTCGAGATACGGGT GCCGGAACTGGCGCCGGTTGCCTAAAGAAGCGGGTTTGGCGAGGTGTGGGAAGAGCTGTCGGCTCCGGTGGCTGAACTATCTCCGGCCGGATATCAAGAG AGGGGGGTTCACTAAGGACGAGGAAGCTACTATCCTTTCTTTGCATGCAACGCTAGGAAATAAATGGTCGATAATAGCAACTCATATGTCGGGAAGAACC GACAACGAGATCAAAAACTACTGGAACACTCACCTTAAAAAACTACAGCCTCCAGTACTTCAGAAAGAAGCTATGTGTTCAAACTTTGATGCTGCCGATG ATCATCACTCTCCTGATCAGCAGATTTCTGTCGGGAGCAATGCATCATCGGAAACCAGTTGTGTGGCGGCAGAAGCGATGCCGATTATTACATCGGTGGT GGCGGGAAATGAGGAAATACTTATTAGTGACGATTTCTGGTCACAACCATTCATGACTTATGGGGAAGATATTGATCAGAATGAGGCTTACGGTACTAGT AGTGACGGGTTCCAAACCGAACGGGAGATGCTTTGGTTTTACCATGCATTGATGAATTACTCTTATTAA
AA sequence Show only first row Show all	>Lus10039771 pacid=23165161 polypeptide=Lus10039771 locus=Lus10039771.g ID=Lus10039771.BGIv1.0 annot-version=v1.0 MARTPYVDRNGLKKGTWTPEEDMRLVEYISRYGCRNWRRLPKEAGLARCGKSCRLRWLNYLRPDIKRGGFTKDEEATILSLHATLGNKWSIIATHMSGRT DNEIKNYWNTHLKKLQPPVLQKEAMCSNFDAADDHHSPDQQISVGSNASSETSCVAAEAMPIITSVVAGNEEILISDDFWSQPFMTYGEDIDQNEAYGTS SDGFQTEREMLWFYHALMNYSY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G34670	MYB	ATMYB93	myb domain protein 93 (.1)		Lus10039771 [exp]	0	1
AT2G14610		PR-1, PR1, ATPR...	pathogenesis-related gene 1 (....		Lus10020491 [exp]	2.0	0.8964
AT5G48380		BIR1	BAK1-interacting receptor-like...		Lus10037226 [exp]	3.0	0.8865
AT5G48380		BIR1	BAK1-interacting receptor-like...		Lus10036697 [exp]	3.9	0.9102
AT2G14610		PR-1, PR1, ATPR...	pathogenesis-related gene 1 (....		Lus10020492 [exp]	5.9	0.8593
AT1G01490			Heavy metal transport/detoxifi...		Lus10027522 [exp]	6.0	0.8858
AT3G53810			Concanavalin A-like lectin pro...		Lus10008597 [exp]	6.7	0.8400
					Lus10041663 [exp]	6.9	0.8704
					Lus10023082 [exp]	7.1	0.8385
AT2G22330		CYP79B3	"cytochrome P450, family 79, s...		Lus10000239 [exp]	8.0	0.8561
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Lus10029946 [exp]	10.4	0.8535

Compare expression of checked genes

Lus10039771 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.