Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21440 174 / 7e-53 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 102 (.1) AT5G16770 172 / 3e-52 MYB ATMYB9 myb domain protein 9 (.1.2) AT5G15310 171 / 5e-52 MYB ATMYB16, ATMIXTA myb domain protein 16 (.1.2) AT3G02940 169 / 6e-51 MYB ATMYB107 myb domain protein 107 (.1) AT2G16720 167 / 8e-51 MYB AtY49, AtMYB7 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) AT3G01140 169 / 2e-50 MYB NOK, ATMYB106 NOECK, myb domain protein 106 (.1) AT1G34670 168 / 2e-50 MYB ATMYB93 myb domain protein 93 (.1) AT5G10280 167 / 2e-50 MYB ATMYB92, AtMYB64 myb domain protein 92 (.1) AT4G28110 166 / 2e-50 MYB ATMYB41 myb domain protein 41 (.1) AT3G23250 166 / 2e-50 MYB ATMYB15, ATY19 myb domain protein 15 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018547 [exp] 407 / 2e-145 AT4G21440 179 / 2e-54 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10018546 [exp] 229 / 7e-76 AT1G34670 176 / 2e-53 myb domain protein 93 (.1) Lus10039771 [exp] 224 / 6e-74 AT1G34670 184 / 5e-57 myb domain protein 93 (.1) Lus10018545 [exp] 194 / 2e-61 AT1G34670 159 / 1e-47 myb domain protein 93 (.1) Lus10039734 [exp] 183 / 9e-58 AT5G65230 183 / 2e-57 myb domain protein 53 (.1) Lus10039735 [exp] 178 / 2e-55 AT5G65230 176 / 5e-54 myb domain protein 53 (.1) Lus10033738 [exp] 175 / 7e-54 AT4G28110 184 / 2e-57 myb domain protein 41 (.1) Lus10031607 [exp] 173 / 3e-53 AT4G28110 182 / 2e-56 myb domain protein 41 (.1) Lus10036472 [exp] 172 / 4e-52 AT5G10280 307 / 1e-103 myb domain protein 92 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G149200 [exp] 185 / 6e-58 AT2G31180 193 / 3e-61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Potri.019G118900 [exp] 180 / 5e-56 AT2G31180 194 / 7e-62 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Potri.007G093900 [exp] 175 / 3e-53 AT1G34670 289 / 6e-96 myb domain protein 93 (.1) Potri.005G074500 [exp] 174 / 8e-53 AT1G34670 290 / 1e-96 myb domain protein 93 (.1) Potri.005G164900 [exp] 173 / 3e-52 AT1G34670 309 / 7e-104 myb domain protein 93 (.1) Potri.011G125900 [exp] 173 / 3e-52 AT4G21440 281 / 1e-92 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.004G033100 [exp] 172 / 1e-51 AT4G21440 293 / 4e-97 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.013G148600 [exp] 172 / 1e-51 AT4G21440 269 / 4e-88 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.017G086300 [exp] 172 / 2e-51 AT5G15310 343 / 6e-117 myb domain protein 16 (.1.2) Potri.008G166700 [exp] 169 / 2e-51 AT3G23250 237 / 2e-77 myb domain protein 15 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10039772 pacid=23165018 polypeptide=Lus10039772 locus=Lus10039772.g ID=Lus10039772.BGIv1.0 annot-version=v1.0 ATGGCGAGGACTCCTTACGTTGACAGAAACGGACTGAACAAGGGGACTTGGACTCGCGAAGAGGACGTGAGGCTTGCGGCCTATGTTTCGAGATTCGGCT GCCGGAACTGGCGCAGGTTGCCTCGGGATGCAGGCTTGGCGAGGTGCGGGAAGAGCTGCCGGCTCCGGTGGCTCAACTATCTCCGGCCGGATATCAAGAG GGGGAATTTTACCCAGGAGGAGGAAGCCACCATCGTTGCCTTGCATGAAACGCTAGGGAATAAATGGTCAGTAATTGCGACTTACATGCCAAAGAGGACC GACAACGAGATTAAAAACTTCTGGAACACGCACCTCAAAAGACTACAGCCTAAGCAAGAAGCTTTAGAGTCAAATGTATCAGATGACATCGACCGTCATG TTCTTCTAGGTTCTCCGAATTTTGAAGCCGACATCGAGAATGAATTTTCCGATGTCGACGAAATTAGCTCATGGATCGAAAATTACAACGAGGACATAAA TCACACCACTACCGAGGTGTCTGTGTCACCTGTACAGGATCATGATCATGATCATTACTCTCCTGCTCATCAGATGTCTGCCCGGAGCAGTTTTTCGTCG AACTCCGAGACAGAAATGGCGACAACGGGTGTGACGAATTCGGGCAATGATGAGTTAGGGGATCTCATTAGTGACTATATCTTGTCACAGCCGTTTTTTT GCCATGAGGAATTCGATCAGTACGACACACTGTGGAGTGATATGGTTTTGCCGTACTAG
AA sequence Show only first row Show all	>Lus10039772 pacid=23165018 polypeptide=Lus10039772 locus=Lus10039772.g ID=Lus10039772.BGIv1.0 annot-version=v1.0 MARTPYVDRNGLNKGTWTREEDVRLAAYVSRFGCRNWRRLPRDAGLARCGKSCRLRWLNYLRPDIKRGNFTQEEEATIVALHETLGNKWSVIATYMPKRT DNEIKNFWNTHLKRLQPKQEALESNVSDDIDRHVLLGSPNFEADIENEFSDVDEISSWIENYNEDINHTTTEVSVSPVQDHDHDHYSPAHQMSARSSFSS NSETEMATTGVTNSGNDELGDLISDYILSQPFFCHEEFDQYDTLWSDMVLPY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Lus10039772 [exp]	0	1
					Lus10011631 [exp]	8.4	0.7540
AT3G42150			unknown protein		Lus10031451 [exp]	12.8	0.7195
AT4G27280			Calcium-binding EF-hand family...		Lus10039724 [exp]	12.9	0.7425
AT5G07610			F-box family protein (.1)		Lus10042990 [exp]	13.4	0.6294
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10012870 [exp]	19.2	0.7424
AT2G38940		PHT1;4, ATPT2	ARABIDOPSIS THALIANA PHOSPHATE...		Lus10033866 [exp]	19.8	0.7199
AT4G25800			Calmodulin-binding protein (.1...		Lus10029861 [exp]	21.4	0.7179
AT3G06030		AtANP3, MAPKKK1...	NPK1-related protein kinase 3 ...		Lus10031963 [exp]	23.7	0.6090
AT4G03230			S-locus lectin protein kinase ...		Lus10033752 [exp]	25.3	0.7033
AT3G27210			unknown protein		Lus10034680 [exp]	26.7	0.5911

Compare expression of checked genes

Lus10039772 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.