Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20880 173 / 1e-50 AP2_ERF AtERF53 ERF domain 53, Integrase-type DNA-binding superfamily protein (.1) AT4G28140 154 / 7e-44 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT4G39780 126 / 1e-33 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G36060 125 / 4e-33 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G22190 122 / 3e-32 AP2_ERF RAP2.4 related to AP2 4, Integrase-type DNA-binding superfamily protein (.1) AT1G78080 123 / 6e-32 AP2_ERF CAF1, RAP2.4, WIND1 wound induced dedifferentiation 1, related to AP2 4 (.1) AT5G65130 117 / 3e-30 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT2G22200 116 / 5e-30 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT4G13620 117 / 2e-29 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT2G33710 96 / 1e-22 AP2_ERF Integrase-type DNA-binding superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018578 [exp] 413 / 1e-143 AT2G20880 195 / 3e-59 ERF domain 53, Integrase-type DNA-binding superfamily protein (.1) Lus10020913 [exp] 126 / 6e-33 AT1G78080 246 / 2e-79 wound induced dedifferentiation 1, related to AP2 4 (.1) Lus10033463 [exp] 124 / 4e-32 AT1G78080 248 / 2e-80 wound induced dedifferentiation 1, related to AP2 4 (.1) Lus10019665 [exp] 121 / 4e-32 AT4G39780 209 / 1e-67 Integrase-type DNA-binding superfamily protein (.1) Lus10016801 [exp] 123 / 1e-31 AT1G78080 245 / 3e-79 wound induced dedifferentiation 1, related to AP2 4 (.1) Lus10000582 [exp] 119 / 1e-31 AT4G39780 208 / 2e-67 Integrase-type DNA-binding superfamily protein (.1) Lus10022497 [exp] 121 / 4e-31 AT1G78080 248 / 2e-80 wound induced dedifferentiation 1, related to AP2 4 (.1) Lus10016669 [exp] 112 / 2e-28 AT4G13620 184 / 2e-55 Integrase-type DNA-binding superfamily protein (.1) Lus10007124 [exp] 112 / 3e-28 AT4G13620 181 / 1e-54 Integrase-type DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G102200 [exp] 241 / 2e-75 AT2G20880 195 / 2e-58 ERF domain 53, Integrase-type DNA-binding superfamily protein (.1) Potri.013G135600 [exp] 232 / 9e-72 AT2G20880 180 / 2e-52 ERF domain 53, Integrase-type DNA-binding superfamily protein (.1) Potri.002G094200 [exp] 137 / 6e-37 AT1G78080 228 / 1e-72 wound induced dedifferentiation 1, related to AP2 4 (.1) Potri.007G090600 [exp] 134 / 2e-35 AT1G78080 205 / 4e-63 wound induced dedifferentiation 1, related to AP2 4 (.1) Potri.005G168700 [exp] 131 / 1e-34 AT1G78080 197 / 3e-60 wound induced dedifferentiation 1, related to AP2 4 (.1) Potri.005G077300 [exp] 127 / 3e-33 AT1G78080 207 / 7e-64 wound induced dedifferentiation 1, related to AP2 4 (.1) Potri.017G055400 [exp] 114 / 4e-28 AT4G13620 216 / 9e-66 Integrase-type DNA-binding superfamily protein (.1) Potri.001G315300 [exp] 108 / 5e-26 AT4G13620 194 / 3e-57 Integrase-type DNA-binding superfamily protein (.1) Potri.001G067600 [exp] 97 / 2e-23 AT5G13330 130 / 1e-37 related to AP2 6l (.1) Potri.003G162500 [exp] 97 / 4e-23 AT5G13330 142 / 5e-42 related to AP2 6l (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10039809 pacid=23165295 polypeptide=Lus10039809 locus=Lus10039809.g ID=Lus10039809.BGIv1.0 annot-version=v1.0 ATGGCGGCAGCTAGGAACAACACAGGGAAATCGAAAAAGATCGAGTTTCGGAACATGACGGATTCTTCTTCTTCTTCCATGACGGAAAGAGAATTGAGAC CTCTGAAAAAGATCCGGAGTCCCGACCGACTCGATCTCAGCCAGCAGTTAGCTTTCCTCCAACAGCAGCAGCAATTCCAACACTCTTTCCCCAATCCACC ATCTTCTTCTTCTTCTTCATTTTCAAATTCCCATGTTTTCACTTCCAAGTTCCCTTTCGCCGTCGACGGCGGTTGCTCCTCCTCGACGAATTGGCCGGTC AATTTCCCTCTGCCGCCGGCGCAGAACCAAAACCAGATGATTTCATTCGGCCAGAGTCAGAATCAGAACCAGTCATTCATGGCGGCGAACTCGTTCCACC ACCAGCAGCAGCTGTTCCGGTACTGGAACGACACGTTGAATCTGTCCCCGAGGGGACAGCTGATCGTCGGACCAGACGGCCGGAGATTCTTCCAGCCTTC ACCGACGGCGATGCCAATCCAACCGATCAACACGACAAAGCTGTACAGGGGAGTGAGGCAGAGGCATTGGGGGAAATGGGTCGCCGAAATCCGCCTCCCC AAAAACCGCACCCGCCTCTGGCTAGGAACGTTCGACACCGCCGAAGATGCAGCAATGGCGTACGACCGTGAAGCTTTCAAGCTCCGCGGCGAGAACGCCC GGCTCAATTTCCCCGAACTCTTCCTCAACAAGGGAAACCCACCTGCAGAGAGCGAAAGCTCTCCTTGCTCTCCGCAGGTAGTAACAGTACAACCTCCTCC CAATGCAGATACTCTGCCTCCGCCGGCCGCGGAGGCACAGGCCGAGGCCGAAACAGAGCAGGATAGCAATTCGGAATCTGCCGCCTCCGTCGCCGCCGAC GGCGGCCAAATGGGATGGGGAGAAATGGCGGACGCATGGCTGAACGCTATACAGGAAGGATGGGGTCCAGGGAGTGCTGTTTGGGATGATTTAGACGCTA ATAACAATCTCTTCCTGAATTCTCAAATCCCATTTCAGAGCAGCAATCAGCAGCAAGGAGAAGGAATAATCTCTGCCACTTCTTCTTCTTCTTCATCGTT GCCATCTTCGTCTTGCTTCCAGACGAAGCCGTTCTTCTGGAAAGATCAAGACTGA
AA sequence Show only first row Show all	>Lus10039809 pacid=23165295 polypeptide=Lus10039809 locus=Lus10039809.g ID=Lus10039809.BGIv1.0 annot-version=v1.0 MAAARNNTGKSKKIEFRNMTDSSSSSMTERELRPLKKIRSPDRLDLSQQLAFLQQQQQFQHSFPNPPSSSSSSFSNSHVFTSKFPFAVDGGCSSSTNWPV NFPLPPAQNQNQMISFGQSQNQNQSFMAANSFHHQQQLFRYWNDTLNLSPRGQLIVGPDGRRFFQPSPTAMPIQPINTTKLYRGVRQRHWGKWVAEIRLP KNRTRLWLGTFDTAEDAAMAYDREAFKLRGENARLNFPELFLNKGNPPAESESSPCSPQVVTVQPPPNADTLPPPAAEAQAEAETEQDSNSESAASVAAD GGQMGWGEMADAWLNAIQEGWGPGSAVWDDLDANNNLFLNSQIPFQSSNQQQGEGIISATSSSSSSLPSSSCFQTKPFFWKDQD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20880	AP2_ERF	AtERF53	ERF domain 53, Integrase-type ...		Lus10039809 [exp]	0	1
AT2G20880	AP2_ERF	AtERF53	ERF domain 53, Integrase-type ...		Lus10018578 [exp]	1.0	0.8748
AT5G38710			Methylenetetrahydrofolate redu...		Lus10034095 [exp]	31.5	0.7736
AT4G11570			Haloacid dehalogenase-like hyd...		Lus10002002 [exp]	36.5	0.7858
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10003093 [exp]	40.1	0.7474
AT5G52580			RabGAP/TBC domain-containing p...		Lus10027698 [exp]	50.6	0.7816
AT1G10290		DRP2A, ADL6	DYNAMIN-RELATED PROTEIN 2A, dy...		Lus10024461 [exp]	69.4	0.7620
AT1G08230		ATGAT1	L-GAMMA-AMINOBUTYRIC ACID TRAN...		Lus10038639 [exp]	71.6	0.7392
AT5G66200		ARO2	armadillo repeat only 2 (.1)		Lus10037087 [exp]	85.2	0.7103
AT4G23980	ARF	ARF9	auxin response factor 9 (.1.2)		Lus10023058 [exp]	90.5	0.7454
AT2G45510		CYP704A2	"cytochrome P450, family 704, ...		Lus10009232 [exp]	92.8	0.7523

Compare expression of checked genes

Lus10039809 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.