Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03630 577 / 0 PORC ,POR C protochlorophyllide oxidoreductase C (.1.2) AT5G54190 565 / 0 PORA protochlorophyllide oxidoreductase A (.1.2) AT4G27440 564 / 0 PORB protochlorophyllide oxidoreductase B (.1.2) AT4G23430 108 / 2e-26 AtTic32-IVa translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT4G23420 100 / 2e-23 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT1G64590 93 / 5e-21 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G11410 92 / 7e-21 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G24050 88 / 3e-19 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G37540 84 / 7e-18 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G50130 82 / 3e-17 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018579 [exp] 725 / 0 AT5G54190 600 / 0.0 protochlorophyllide oxidoreductase A (.1.2) Lus10043090 [exp] 563 / 0 AT5G54190 652 / 0.0 protochlorophyllide oxidoreductase A (.1.2) Lus10032665 [exp] 503 / 1e-180 AT5G54190 545 / 0.0 protochlorophyllide oxidoreductase A (.1.2) Lus10024647 [exp] 112 / 7e-28 AT4G11410 461 / 1e-164 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10035480 [exp] 105 / 2e-25 AT4G11410 444 / 5e-158 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10035479 [exp] 105 / 3e-25 AT4G11410 444 / 2e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024685 [exp] 105 / 4e-25 AT4G23430 431 / 4e-152 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10038857 [exp] 104 / 8e-25 AT4G23430 436 / 2e-154 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10031101 [exp] 103 / 1e-24 AT4G23430 478 / 1e-171 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G135500 [exp] 573 / 0 AT1G03630 604 / 0.0 protochlorophyllide oxidoreductase C (.1.2) Potri.011G122400 [exp] 558 / 0 AT5G54190 592 / 0.0 protochlorophyllide oxidoreductase A (.1.2) Potri.001G403300 [exp] 542 / 0 AT5G54190 555 / 0.0 protochlorophyllide oxidoreductase A (.1.2) Potri.015G146600 [exp] 112 / 6e-28 AT4G23420 444 / 6e-158 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.012G143600 [exp] 111 / 2e-27 AT4G23430 401 / 2e-140 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.001G103000 [exp] 108 / 2e-26 AT4G11410 446 / 4e-159 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G083900 [exp] 102 / 1e-24 AT5G02540 452 / 3e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.003G128800 [exp] 102 / 2e-24 AT4G23420 442 / 5e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.012G143800 [exp] 98 / 1e-22 AT4G23420 427 / 3e-151 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.003G128700 [exp] 95 / 9e-22 AT4G11410 497 / 4e-179 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10039810 pacid=23165275 polypeptide=Lus10039810 locus=Lus10039810.g ID=Lus10039810.BGIv1.0 annot-version=v1.0 ATGGCGCTCCAAGCTGCCACCTTTCTTCCTTCCACAGCCTCCCTCAACAAAGACGCCCGTGCCCTTCCTCGAAGAACTTCACTCTCACTGGATTCCGCCT CTTCCTTCAACACAAGCAAGCAATTCAAGTTGAGGAAAGCACCTTATTACGGAGGAGGAGCGCTAGTCCTCCGAGCACAGACCACTGCTACGACCACGAC TCCGAATCAGACTGATTCGGGCTCGAAGAAGACGAGCAGGAAGGGGAATGTGATCATCACAGGAGCTTCGTCTGGGTTGGGACTCGCGACTGCCAAGGCT TTGGGAGAGTCGGGGGAATGGCATGTGATCATGGCTTGCCGGAACTTTCTCAAGGCGGAGAAGGCTGCGAAATCGGCTGGGATTCCGAGGGAGAATTACA CGGTGATGCACCTTGACTTGGCTTCGCTGGACAGTGTCAGACAGTTTGCTGAGAATTTCCGACGGACTGGGAAGCCGTTGGATGTTGTGGTATGTAATGC TGCTGTTTATCAGCCTACTGCTAAAGAACCAACTTTCACGGCTGATGGATTCGAGATAAGCGTTGGGACGAACCATCTTGGACATTTCTTGCTCGCGAAG TTGCTACTGGATGACCTGAAGAAGTCGGATTATCCCTCGAAACGCCTCATCATTGTCGGATCCATTACAGGGAACACTAACACATTGGCGGGGAACGTGC CACCGAAGGCGAACCTGGGAGACCTGAGAGGACTCGTCGGCGGTTTAAATGGGACAACAACCTCCGCCATGATCGACGGTGGAGAGTTCGACGGAGCAAA AGCATACAAAGACAGCAAAGTATGCAACATGCTCACAATGCAAGAGTTCCACAGGAGGTATCACGAGGAGACCGGAGTTACCTTTGCTTCGCTGTATCCC GGGTGCATTGCAGAGACCGGGTTGTTCAGAGAGCACATCCCGTTGTTTCGGCTTTTGTTCCCGCCGTTCCAGAAATACATTACCAAAGGCTACGTCTCCG AGGAAGAAGCCGGGAAGAGACTCGCACAGGTTGTTAGTGAGCCATACCTTGCAAAATCGGGAGTCTACTGGAGCTGGAACAAGAACAAGTCGTCGTTCGA GAATCAGCTTTCGGAAGAAGCTAGTGATGCTGAAAAGGCAAGGAAGCTATGGGAAATAAGTGAGAAGCTAGTTGGGTTGGCATAA
AA sequence Show only first row Show all	>Lus10039810 pacid=23165275 polypeptide=Lus10039810 locus=Lus10039810.g ID=Lus10039810.BGIv1.0 annot-version=v1.0 MALQAATFLPSTASLNKDARALPRRTSLSLDSASSFNTSKQFKLRKAPYYGGGALVLRAQTTATTTTPNQTDSGSKKTSRKGNVIITGASSGLGLATAKA LGESGEWHVIMACRNFLKAEKAAKSAGIPRENYTVMHLDLASLDSVRQFAENFRRTGKPLDVVVCNAAVYQPTAKEPTFTADGFEISVGTNHLGHFLLAK LLLDDLKKSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGLVGGLNGTTTSAMIDGGEFDGAKAYKDSKVCNMLTMQEFHRRYHEETGVTFASLYP GCIAETGLFREHIPLFRLLFPPFQKYITKGYVSEEEAGKRLAQVVSEPYLAKSGVYWSWNKNKSSFENQLSEEASDAEKARKLWEISEKLVGLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54190		PORA	protochlorophyllide oxidoreduc...		Lus10039810 [exp]	0	1
AT4G25080		CHLM	magnesium-protoporphyrin IX me...		Lus10036021 [exp]	1.0	0.9749
AT5G54190		PORA	protochlorophyllide oxidoreduc...		Lus10018579 [exp]	2.4	0.9683
AT3G54210			Ribosomal protein L17 family p...		Lus10006999 [exp]	2.4	0.9693
AT1G68590			Ribosomal protein PSRP-3/Ycf65...		Lus10021693 [exp]	3.5	0.9679
AT2G24090			Ribosomal protein L35 (.1)		Lus10007706 [exp]	3.7	0.9630
AT5G45930		CHLI-2, CHLI2	magnesium chelatase i2 (.1)		Lus10025423 [exp]	3.9	0.9641
AT3G54210			Ribosomal protein L17 family p...		Lus10007002 [exp]	4.2	0.9638
AT4G02530			chloroplast thylakoid lumen pr...		Lus10030109 [exp]	5.2	0.9520
AT2G18710		SCY1	SECY homolog 1 (.1)		Lus10008901 [exp]	5.7	0.9471
AT1G02150			Tetratricopeptide repeat (TPR)...		Lus10009787 [exp]	6.9	0.9545

Compare expression of checked genes

Lus10039810 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.