Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31050 74 / 3e-16 Cupredoxin superfamily protein (.1) AT2G26720 67 / 2e-13 Cupredoxin superfamily protein (.1) AT5G57920 65 / 5e-13 AtENODL10 early nodulin-like protein 10 (.1) AT3G20570 62 / 1e-11 AtENODL9 early nodulin-like protein 9 (.1) AT2G32300 61 / 3e-11 UCC1 uclacyanin 1 (.1) AT4G30590 60 / 4e-11 AtENODL12 early nodulin-like protein 12 (.1) AT5G53870 61 / 8e-11 AtENODL1 early nodulin-like protein 1 (.1) AT5G26330 59 / 9e-11 Cupredoxin superfamily protein (.1) AT5G20230 59 / 2e-10 SAG14, ATBCB SENESCENCE ASSOCIATED GENE 14, BLUE COPPER BINDING PROTEIN, blue-copper-binding protein (.1) AT2G25060 58 / 2e-10 AtENODL14 early nodulin-like protein 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018606 [exp] 158 / 2e-48 AT5G53870 61 / 5e-11 early nodulin-like protein 1 (.1) Lus10006657 [exp] 79 / 5e-17 AT1G45063 106 / 1e-26 copper ion binding;electron carriers (.1.2) Lus10038098 [exp] 77 / 2e-16 AT1G45063 107 / 1e-27 copper ion binding;electron carriers (.1.2) Lus10019405 [exp] 74 / 4e-15 AT1G45063 107 / 3e-27 copper ion binding;electron carriers (.1.2) Lus10035911 [exp] 71 / 6e-15 AT5G20230 95 / 3e-24 SENESCENCE ASSOCIATED GENE 14, BLUE COPPER BINDING PROTEIN, blue-copper-binding protein (.1) Lus10025752 [exp] 71 / 1e-14 AT5G20230 101 / 1e-26 SENESCENCE ASSOCIATED GENE 14, BLUE COPPER BINDING PROTEIN, blue-copper-binding protein (.1) Lus10041211 [exp] 63 / 3e-12 AT5G26330 167 / 6e-53 Cupredoxin superfamily protein (.1) Lus10010533 [exp] 63 / 5e-12 AT5G26330 174 / 1e-55 Cupredoxin superfamily protein (.1) Lus10021925 [exp] 61 / 2e-11 AT5G26330 170 / 5e-54 Cupredoxin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G243600 [exp] 114 / 3e-31 AT5G20230 73 / 6e-16 SENESCENCE ASSOCIATED GENE 14, BLUE COPPER BINDING PROTEIN, blue-copper-binding protein (.1) Potri.018G129400 [exp] 69 / 3e-14 AT5G20230 114 / 6e-32 SENESCENCE ASSOCIATED GENE 14, BLUE COPPER BINDING PROTEIN, blue-copper-binding protein (.1) Potri.006G067300 [exp] 69 / 5e-14 AT5G20230 97 / 2e-24 SENESCENCE ASSOCIATED GENE 14, BLUE COPPER BINDING PROTEIN, blue-copper-binding protein (.1) Potri.002G161300 [exp] 68 / 5e-14 AT5G26330 146 / 5e-45 Cupredoxin superfamily protein (.1) Potri.006G067400 [exp] 66 / 2e-13 AT5G20230 112 / 2e-31 SENESCENCE ASSOCIATED GENE 14, BLUE COPPER BINDING PROTEIN, blue-copper-binding protein (.1) Potri.006G259101 [exp] 66 / 3e-13 AT5G26330 142 / 2e-43 Cupredoxin superfamily protein (.1) Potri.003G047300 [exp] 66 / 5e-13 AT5G26330 121 / 2e-34 Cupredoxin superfamily protein (.1) Potri.001G268700 [exp] 64 / 9e-13 AT5G26330 138 / 6e-42 Cupredoxin superfamily protein (.1) Potri.006G259000 [exp] 64 / 1e-12 AT5G26330 144 / 6e-44 Cupredoxin superfamily protein (.1) Potri.002G156401 [exp] 64 / 1e-12 AT5G26330 138 / 1e-41 Cupredoxin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF02298 [flax] [poplar] Cu_bind_like Plastocyanin-like domain
Representative CDS sequence Show only first row Show all	>Lus10039842 pacid=23165324 polypeptide=Lus10039842 locus=Lus10039842.g ID=Lus10039842.BGIv1.0 annot-version=v1.0 ATGGCGTCTCTTCGCATAAACCTGGCAATAGCTGTAGCGATACTCAACTCGGTCGCCTCCGGCTTCCACTACATGATCGGAGATTCCATCTGGACAATCC CTCCTTCATCCGACTTCTACTCCAGCTGGTCCTCCTCCCATTCCTTCTACATCGGCGACTCTCTAGTATTTGAGTTTGGAATGGAGTTGTTCAACGTTGT GCAAGTGATGAGAAACGACTACGAGAGCTGCACCGGTGACTCTCCTCTCAAGGTCTTTCGAAGCAGTCCTGCAGTCGTCGAGCTAACCTACAAGGGCGTT TTCTACTACATTTGCAATGTGTCGAACTACTGCGATCTCGGCCAGAAGGTCTCTATTGTTGTCCTCCAGAGACCTTCCTCTGCCCCCATATCATCACCAC CACTCCCTTTCCATTCACCACCATTGCTGCCACCGCCTTCCTCTTCATCTTCCACTCCGCCCTTGCCTTCAGGACCACCATCTTTGCCACCATCGACACC GACTCGACCGGTGAATGATCCGTCTCCACCATTACCAGGTGTAGAGAACAACCATTCACCATCTCCAAGTTCCTATTTTAGTAGTAATAGCGTCTCAAGT AGGGCGGGAATAGTTTACTTTTTGTTTGTGCTGGTTATGGTTAGAATCGTCAACAGTGATATAGTTTAG
AA sequence Show only first row Show all	>Lus10039842 pacid=23165324 polypeptide=Lus10039842 locus=Lus10039842.g ID=Lus10039842.BGIv1.0 annot-version=v1.0 MASLRINLAIAVAILNSVASGFHYMIGDSIWTIPPSSDFYSSWSSSHSFYIGDSLVFEFGMELFNVVQVMRNDYESCTGDSPLKVFRSSPAVVELTYKGV FYYICNVSNYCDLGQKVSIVVLQRPSSAPISSPPLPFHSPPLLPPPSSSSSTPPLPSGPPSLPPSTPTRPVNDPSPPLPGVENNHSPSPSSYFSSNSVSS RAGIVYFLFVLVMVRIVNSDIV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31050			Cupredoxin superfamily protein...		Lus10039842 [exp]	0	1
AT5G22820			ARM repeat superfamily protein...		Lus10005366 [exp]	1.4	0.9142
AT1G78160		APUM7	pumilio 7 (.1)		Lus10041139 [exp]	2.0	0.8957
AT5G10530			Concanavalin A-like lectin pro...		Lus10007077 [exp]	4.0	0.8879
AT5G62360			Plant invertase/pectin methyle...		Lus10024596 [exp]	8.5	0.8789
AT5G53870		AtENODL1	early nodulin-like protein 1 (...		Lus10018606 [exp]	11.5	0.8603
AT1G04650			unknown protein		Lus10011755 [exp]	12.5	0.8912
AT4G01575			serine protease inhibitor, Kaz...		Lus10010094 [exp]	14.3	0.8029
AT5G52290		SHOC1	shortage in chiasmata 1 (.1)		Lus10038861 [exp]	17.1	0.8720
AT3G58160		XI-16, MYA3, AT...	MYOSIN XI-16, MYOSIN A3, MYOSI...		Lus10014753 [exp]	17.6	0.8323
AT1G03440			Leucine-rich repeat (LRR) fami...		Lus10031601 [exp]	19.0	0.8479

Compare expression of checked genes

Lus10039842 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.