Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17680 545 / 2e-172 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G36930 539 / 5e-171 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G27170 479 / 6e-147 transmembrane receptors;ATP binding (.1.2) AT5G44510 455 / 1e-139 TAO1 target of AVRB operation1 (.1) AT4G12010 447 / 1e-136 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G11250 443 / 3e-135 Disease resistance protein (TIR-NBS-LRR class) (.1) AT2G14080 439 / 1e-133 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G69550 438 / 8e-132 disease resistance protein (TIR-NBS-LRR class) (.1) AT1G27180 436 / 6e-130 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G18350 428 / 3e-129 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018616 [exp] 2277 / 0 AT5G36930 578 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10005171 [exp] 572 / 0 AT1G27170 576 / 0.0 transmembrane receptors;ATP binding (.1.2) Lus10011104 [exp] 515 / 9e-162 AT5G17680 574 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10029722 [exp] 505 / 2e-159 AT5G17680 608 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10030839 [exp] 507 / 1e-158 AT4G12010 552 / 7e-176 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10041060 [exp] 487 / 7e-151 AT5G17680 641 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10011741 [exp] 481 / 3e-149 AT5G36930 540 / 4e-172 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10003749 [exp] 473 / 3e-145 AT5G17680 517 / 5e-161 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10001375 [exp] 449 / 3e-135 AT5G36930 464 / 3e-141 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G206400 [exp] 893 / 0 AT5G36930 587 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.002G056100 [exp] 843 / 0 AT5G36930 591 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G001602 [exp] 659 / 0 AT5G36930 778 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G004599 [exp] 629 / 0 AT5G36930 627 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G001600 [exp] 623 / 0 AT5G36930 721 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G069200 [exp] 618 / 0 AT5G17680 590 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.007G099700 [exp] 595 / 0 AT5G36930 562 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G069500 [exp] 593 / 0 AT5G17680 711 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.T002300 [exp] 592 / 0 AT5G36930 635 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G003285 [exp] 588 / 0 AT5G36930 640 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10039850 pacid=23165029 polypeptide=Lus10039850 locus=Lus10039850.g ID=Lus10039850.BGIv1.0 annot-version=v1.0 ATGGCTTCCAACGACGACGGAGACGACGACGGCGATATTTCTCCCGCTGTGGAGCCGTGTCGCGCGCGGTGGAACTACGATGTCTTCCTCAGCTTCAGAG GAGCCGACACGAGAACTGGGTTCACCGGCCACCTCTACTCGGCGCTCCTTCGCGACGGGATCCACACTTTCCTCGACGACAAGGAGATGGAGACCGGCGG AGAGGTGGGCCCGGAGTGCCTGAGAGGGATCGAAGAGTCGAGATTCTCCTTCGTCGTCCTGTCCCAACACTACGCTTCCTCGATCTGGTGCTTGGAGGAG CTCGTTCACATCCTCAAATGCAGGAGGGAAAAGGGTCACGGCGTCTGGCCGGTGTTCTACGGCGTAGATCCGTCGGACGTCGAGGAGTGCAAAGGGAGTT TCGCCGATGCGTTCGCCAAGCACGAGGCCGATTTCAAATCGGAGATTGAGACAGGGAAGAGGACGATCGGAGACTGGGAAGGGTTCGCGGCTCGGATTGA AGAGTGGAGATCTGCGCTACGTGAAGTCTCTTATCTGAAAGGATTGGATGTACGGAACCACGCTGATGGCAACGAAGCAACGAATATCGAGCACCTGGTG AAGGAGATCTCCAAGAGACTTGACAGAAAAGTTCTGAGCGTTGCTAGAAATCCTGTAGGGGTTCGTCCTCGAGCACAGCCGGTGATTTCTTTCCTAGGTT TCGACTCTCCAGGCGTCCGTGTTGTTGGGATACATGGCATGGGGGGAGTTGGCAAGACTACAGTGGCGAAGGAGGTTTACAACTCGGTCTTCAATAATTT CGAAGGCTCTTGTTTCCTGTCAAATGTCAGGGAACAATTGGCGGTCAAAGGTGTACCATACTTGCAAAGGCAACTCCTTTCCGAGATCCTGAAGAGGAGA TACGAGAAGATTGACAATGGTGATCGAGGGTTGAATCTCATACGAGACAGATTATGCCACAAACAGCTTCTTCTCGTCCTGGACGATGTTGACGAAATGA GTCAAGTGAACAAAGTGATTGGAAGCCTTGCTTGGCTATCCGAAGGAAGCCGAGTGATCATCACTACTAGAACTAAGAATCTCCTGCAACCATCTGAATT CTTTTGGCAGTATGAGGTTCAGGAATTAGACGAGAGAGATTCTCTCGAGCTCTTGAGTTTGCACGCCTTTGATAGGCGTGATCCACCGGAACACTACGAA AATAGTGCAGGACAGATGCTGCAATATACCAGGGGAGTTCCGCTAGCTCTTGAAGTTTTGGGTAGTTCGTTACGTGGCCAAACTGTCGAAATATGGAATA GCAGAATGGAGAAGCTTAAGCTGATGGCTAATGAAGATATTCAGCCTGTGTTAAAGACGAGCTACGATTCGCTTGACGATACTGAGAAGTTCATACTCCT CGACATTGCTTGCTTCTTTGTTGGATATGATAAAGACTATGTGATGAGCATACTTGAAGGTTGTGGTTTCTTTCCAACTGATGGAATCAATACTCTGATG AGGCGGAGCCTTTTGAAAGTCGATTATCGGAACAAGCTATGGATGCATGATTTGCTTCGGGGCATGGGGAGAGAAATCGTTCGTCAAGAGAGTCCTGTAG ATCCCGGGGAGCGTAGCAGGTTATGGCGTGATGAAGATGTTTCAAACGTGCTAACTAGTAAAACAGGGACAAAAGTCATTGAAGGGCTGGCAGTGAACTC ACTGGCGATTGAGTTTTCTGCGACTGCAAAGGCATTCAAGAAGATGAAAAGGCTGAGACTGCTAAAGCTTAATCATGTACGTGTCAAGGGAAGCTATGAG TACATTTCTTGTAAGTTGAGGTGGCTGTGCTGGCATGGATTCTCATTGGAATCTATCCCGTCTGATTTTGAATTGGAGAATCTGATTGCTCTTGATATGC GTCACAGCAGCCTGGAAATTTTCTCAGAGGAAGACGAGAAGTCCATGAAGAAGCTGAAATTCCTTGACCTGAGCCACTCTCTTAAGCTCATCAGGACTCC TAATTTTGAAGACATCCCCAGGATCGAGAAACTGAAGCTCAAGGGCTGCATTAGCTTGGAAGAAGTTGATGACTCCATCAGATATCTTATTCATCTCCGT TCTCTCAATTTGCAAGGATGCCACAAGCTTAAAACTCTGCCAGACAGCATTAGCGCCCTGGCCGGATCAATTGTAAACCTGAACATGTCTGGTTGCTCAG CATTCGAGACGTTACCAGTGTCCGTTGGCTCGCTTGATCATCTTGCTCTCTTGAATTTGAAAGAATGCAGGAATCTTAAATGCCTCCCATCAAGCATCGG CGGTTTGAAATCTCTCACGGACTTGGACTTGTCAGGCTGCTCGGAACTCGAAGAACTGCCTGAATCGGTCGGACTCTTGGGTCATCTCGAATCCTTAAAC ATGTCTGGTTGTTCCAAACTGGAGCTACTTCCGGATTCCATTGGTTCCCTCACTCGCATACCGATTTTGAATTTGAGAGGCTGCACAAGTCTCAAGTATC TCCCTCAAAGCATTGGTGCTCTAACGTCATTGAAGAAGATCAACCTGTCAGGATGCTCAAGTCTCGTCGAGTTGCCTGAGGGAATTGGAGCTTTAGAGCC TTTACTTGTACTTATGGCCAACGAAACTGCATTGACTACTCTCCCGGAGACAACTTCAAACCTCAAGAAGCTTAAAGTATTATCTCTACGCGGTTGTGAC CGGTTGTTCTTCGCTCCGAAGAACAACCCTTTGGTGCTCAACTTCCTTCCTGCTTCCTTGAGCAGGTTGGATCTTAGACACTGCAACATAACGGATGAGA TAATGCCTGGAGATCTAGGAAGCTTGCGTCTCCTGAACATCTTGAAGTTATGTGGGAACAACTTTACTTGCTTGCCAGAGAGCATCAATTCCTTACCGGA ACTTGCTGAGCTTTGGCTCAACAAGTGCAGGACACTTAGAAGAATACCGGAGCTTCATTCGGGTGTTAAAGTGTTGCAGGCGAATGACTGCCCGTCGCTG GAGACGATCAACTTGAGAAACTACCATGGAGCTGCGGGCTTGGAAGTTAAGGGGTGTATGAACTTGAGAGAAATCGAAGGGTTTTACAGCTTGGAAACAC TTGAACCTGAAACATTTGAGGTTCTTGAAAGTTGTGGGTTCTTCTTCTCGCAGGGTTCGGCATCAAACGTTCAAACTTACAAGGTTGACAGCCTTACTGA TACGTACAGCGTTTGCCCCCTTCAGGCTCTGGCAGAAAGGGGGATATACAGCCTGTTCATCCCATCAACCAAAATTCCAACGTGGTTCACCCATCAAACA GACGGCGACACCATATCCTTTCGTGTACCTCAACTCCCTAAAGGCTCCACCATCACCGGGATCGCTACTTGCGCCATTTACGCGTGGGATCGCCCCAGGG AGTCGTGCTTCTTCATGCCGTACATTCGAATTGTCAACAGAACAAAGTTGTTCAACTGGCTGTATACTCCACACATCACCTTCTTCGTGAACGATGGCGA CGAGAGCCAGAGAGAGACCATGTGGCTCTGCCACTGGACTTTCGACCCGAATGCAGTACACGTGGACGACATCGATGCTGGCTGGAGGCTTATGGGCGAG ACCGAACAAGGCGACGAGGTTGAGTTCTGTGTTGACATGGGGTATGGGATTCGAGTCAAGAAATGCGGCGTCCATCCACTTTATAGTAACAACTTTGGTG ATGGTGATGGTTTGGTGATGAGACCTTGA
AA sequence Show only first row Show all	>Lus10039850 pacid=23165029 polypeptide=Lus10039850 locus=Lus10039850.g ID=Lus10039850.BGIv1.0 annot-version=v1.0 MASNDDGDDDGDISPAVEPCRARWNYDVFLSFRGADTRTGFTGHLYSALLRDGIHTFLDDKEMETGGEVGPECLRGIEESRFSFVVLSQHYASSIWCLEE LVHILKCRREKGHGVWPVFYGVDPSDVEECKGSFADAFAKHEADFKSEIETGKRTIGDWEGFAARIEEWRSALREVSYLKGLDVRNHADGNEATNIEHLV KEISKRLDRKVLSVARNPVGVRPRAQPVISFLGFDSPGVRVVGIHGMGGVGKTTVAKEVYNSVFNNFEGSCFLSNVREQLAVKGVPYLQRQLLSEILKRR YEKIDNGDRGLNLIRDRLCHKQLLLVLDDVDEMSQVNKVIGSLAWLSEGSRVIITTRTKNLLQPSEFFWQYEVQELDERDSLELLSLHAFDRRDPPEHYE NSAGQMLQYTRGVPLALEVLGSSLRGQTVEIWNSRMEKLKLMANEDIQPVLKTSYDSLDDTEKFILLDIACFFVGYDKDYVMSILEGCGFFPTDGINTLM RRSLLKVDYRNKLWMHDLLRGMGREIVRQESPVDPGERSRLWRDEDVSNVLTSKTGTKVIEGLAVNSLAIEFSATAKAFKKMKRLRLLKLNHVRVKGSYE YISCKLRWLCWHGFSLESIPSDFELENLIALDMRHSSLEIFSEEDEKSMKKLKFLDLSHSLKLIRTPNFEDIPRIEKLKLKGCISLEEVDDSIRYLIHLR SLNLQGCHKLKTLPDSISALAGSIVNLNMSGCSAFETLPVSVGSLDHLALLNLKECRNLKCLPSSIGGLKSLTDLDLSGCSELEELPESVGLLGHLESLN MSGCSKLELLPDSIGSLTRIPILNLRGCTSLKYLPQSIGALTSLKKINLSGCSSLVELPEGIGALEPLLVLMANETALTTLPETTSNLKKLKVLSLRGCD RLFFAPKNNPLVLNFLPASLSRLDLRHCNITDEIMPGDLGSLRLLNILKLCGNNFTCLPESINSLPELAELWLNKCRTLRRIPELHSGVKVLQANDCPSL ETINLRNYHGAAGLEVKGCMNLREIEGFYSLETLEPETFEVLESCGFFFSQGSASNVQTYKVDSLTDTYSVCPLQALAERGIYSLFIPSTKIPTWFTHQT DGDTISFRVPQLPKGSTITGIATCAIYAWDRPRESCFFMPYIRIVNRTKLFNWLYTPHITFFVNDGDESQRETMWLCHWTFDPNAVHVDDIDAGWRLMGE TEQGDEVEFCVDMGYGIRVKKCGVHPLYSNNFGDGDGLVMRP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36930			Disease resistance protein (TI...		Lus10039850 [exp]	0	1
AT2G47230		ATDUF6	DOMAIN OF UNKNOWN FUNCTION 724...		Lus10004508 [exp]	5.0	0.8369
AT5G47900			Protein of unknown function (D...		Lus10019798 [exp]	8.9	0.7985
AT5G07320		APC3	ATP/phosphate carrier 3, Mitoc...		Lus10032523 [exp]	11.5	0.8246
AT2G27810		ATNAT12	ARABIDOPSIS NUCLEOBASE-ASCORBA...		Lus10009401 [exp]	12.8	0.8107
AT5G14370			CCT motif family protein (.1)		Lus10022311 [exp]	13.7	0.8040
AT1G32200		ACT1, ATS1	ACYLTRANSFERASE 1, phospholipi...		Lus10000675 [exp]	15.3	0.7887
AT2G27680			NAD(P)-linked oxidoreductase s...		Lus10020579 [exp]	17.7	0.8207
AT5G14370			CCT motif family protein (.1)		Lus10014886 [exp]	25.3	0.7975
AT5G22510		INV-E, At-A/N-I...	Arabidopsis alkaline/neutral i...		Lus10043375 [exp]	25.5	0.7857
AT1G13190			RNA-binding (RRM/RBD/RNP motif...		Lus10038759 [exp]	29.6	0.7866

Compare expression of checked genes

Lus10039850 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.