Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32490 140 / 1e-41 AtENODL4 early nodulin-like protein 4 (.1) AT4G28365 133 / 2e-39 AtENODL3 early nodulin-like protein 3 (.1) AT5G53870 132 / 4e-37 AtENODL1 early nodulin-like protein 1 (.1) AT4G27520 123 / 6e-34 AtENODL2 early nodulin-like protein 2 (.1) AT3G20570 111 / 1e-30 AtENODL9 early nodulin-like protein 9 (.1) AT2G25060 107 / 2e-29 AtENODL14 early nodulin-like protein 14 (.1) AT5G57920 102 / 3e-27 AtENODL10 early nodulin-like protein 10 (.1) AT4G31840 100 / 6e-27 AtENODL15 early nodulin-like protein 15 (.1) AT4G30590 96 / 8e-25 AtENODL12 early nodulin-like protein 12 (.1) AT5G25090 95 / 2e-24 AtENODL13 early nodulin-like protein 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018617 [exp] 257 / 9e-88 AT4G28365 150 / 5e-46 early nodulin-like protein 3 (.1) Lus10009196 [exp] 120 / 3e-33 AT5G53870 154 / 3e-44 early nodulin-like protein 1 (.1) Lus10011158 [exp] 105 / 4e-28 AT3G20570 149 / 2e-45 early nodulin-like protein 9 (.1) Lus10043063 [exp] 102 / 3e-27 AT3G20570 153 / 4e-47 early nodulin-like protein 9 (.1) Lus10032111 [exp] 93 / 1e-23 AT5G14345 147 / 1e-45 early nodulin-like protein 21 (.1) Lus10026880 [exp] 92 / 4e-23 AT5G25090 167 / 8e-53 early nodulin-like protein 13 (.1) Lus10014880 [exp] 91 / 7e-23 AT3G18590 144 / 1e-43 early nodulin-like protein 5 (.1) Lus10022318 [exp] 91 / 7e-23 AT3G18590 146 / 4e-45 early nodulin-like protein 5 (.1) Lus10003432 [exp] 91 / 1e-22 AT5G25090 167 / 5e-53 early nodulin-like protein 13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G011200 [exp] 157 / 1e-48 AT4G32490 157 / 2e-48 early nodulin-like protein 4 (.1) Potri.011G117800 [exp] 137 / 3e-39 AT5G53870 158 / 3e-45 early nodulin-like protein 1 (.1) Potri.001G398800 [exp] 134 / 5e-38 AT4G28365 145 / 9e-42 early nodulin-like protein 3 (.1) Potri.011G135400 [exp] 106 / 1e-28 AT3G20570 138 / 4e-41 early nodulin-like protein 9 (.1) Potri.006G264600 [exp] 102 / 2e-27 AT2G25060 184 / 9e-60 early nodulin-like protein 14 (.1) Potri.018G018200 [exp] 100 / 1e-26 AT2G25060 177 / 7e-57 early nodulin-like protein 14 (.1) Potri.001G338800 [exp] 96 / 8e-25 AT5G14345 145 / 6e-45 early nodulin-like protein 21 (.1) Potri.006G184100 [exp] 96 / 8e-25 AT4G31840 174 / 5e-56 early nodulin-like protein 15 (.1) Potri.001G419200 [exp] 96 / 2e-24 AT3G20570 153 / 1e-46 early nodulin-like protein 9 (.1) Potri.015G052000 [exp] 95 / 2e-24 AT1G48940 163 / 1e-51 early nodulin-like protein 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF02298 [flax] [poplar] Cu_bind_like Plastocyanin-like domain
Representative CDS sequence Show only first row Show all	>Lus10039852 pacid=23165067 polypeptide=Lus10039852 locus=Lus10039852.g ID=Lus10039852.BGIv1.0 annot-version=v1.0 ATGGTAACGGCGTTTCTGTTCATCGTAAAGTCGTCGGAAGGTTACCAATTCCCCGTCGGCGGCAAGCAAGGGTGGGTCGTGGACCCCAAGGAGAAATACT CTCATTGGGCCGAACGCCTTCGTTTCCAAATCAACGACACCCTCTATTTCAAGTACAAGAAAGGTATGGATTCAGTGTTGGTGGTGAACAAGTCTCAGTA CGACAACTGTAATGTGTCGGCCCCGGTTCAGGCGTTAACCGAAGGAAACTCGATCATCCGATTCTACCGGTCCGGTCCGTTCTTCTTCATCTCCGGGTTT GCTGACCACTGCAACCGTGGTCAAAAACTGGTCGTGGTGGTGTTGTCCGAGCACCACCACAAGAAACCCACCTCTCCTCCATCGTCGTCTCCCAGTTCCT CTATCGTGGCTCCACCTCCGGCTTCCTCTCCCTCGGACGATGGTGATGATACGCCTTCCCCAGCGGTGGGTCCCACAACAGCTGCTCCTATTAACTCGGG GGCGGGTACTACTCGGTTTTCAGCTGGTTTGACTGGGTTGGTTGGTTTGGTTGTGATGCTTGTTAGTGTTGGGTTTGTTGGGGTGTTTTGA
AA sequence Show only first row Show all	>Lus10039852 pacid=23165067 polypeptide=Lus10039852 locus=Lus10039852.g ID=Lus10039852.BGIv1.0 annot-version=v1.0 MVTAFLFIVKSSEGYQFPVGGKQGWVVDPKEKYSHWAERLRFQINDTLYFKYKKGMDSVLVVNKSQYDNCNVSAPVQALTEGNSIIRFYRSGPFFFISGF ADHCNRGQKLVVVVLSEHHHKKPTSPPSSSPSSSIVAPPPASSPSDDGDDTPSPAVGPTTAAPINSGAGTTRFSAGLTGLVGLVVMLVSVGFVGVF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28365		AtENODL3	early nodulin-like protein 3 (...		Lus10039852 [exp]	0	1
AT5G44940			F-box/RNI-like superfamily pro...		Lus10000726 [exp]	2.0	0.9930
AT1G02335		GL22	germin-like protein subfamily ...		Lus10023350 [exp]	2.8	0.9930
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10036927 [exp]	3.5	0.9925
AT5G28237			Pyridoxal-5'-phosphate-depende...		Lus10018358 [exp]	4.4	0.9542
AT5G36000			unknown protein		Lus10004013 [exp]	4.5	0.9907
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Lus10000747 [exp]	5.5	0.9831
AT5G61850	LFY	LFY3, LFY	LEAFY 3, floral meristem ident...		Lus10016732 [exp]	7.1	0.9838
					Lus10000586 [exp]	7.3	0.9742
AT3G54200			Late embryogenesis abundant (L...		Lus10007649 [exp]	8.0	0.9766
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10010759 [exp]	8.8	0.9823

Compare expression of checked genes

Lus10039852 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.