Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44210 103 / 2e-27 AP2_ERF AtERF9, ATERF-9 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) AT3G15210 91 / 3e-22 AP2_ERF ATERF4, RAP2.5, ATERF-4 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) AT1G28360 87 / 3e-21 AP2_ERF AtERF12 ERF domain protein 12 (.1) AT1G53170 86 / 6e-21 AP2_ERF ATERF8, ATERF-8 ETHYLENE RESPONSE ELEMENT BINDING FACTOR 4, ethylene response factor 8 (.1) AT1G28370 85 / 1e-20 AP2_ERF AtERF11 ERF domain protein 11 (.1) AT1G12980 82 / 2e-18 AP2_ERF DRN, ESR1 ENHANCER OF SHOOT REGENERATION 1, DORNROSCHEN, Integrase-type DNA-binding superfamily protein (.1) AT1G03800 81 / 2e-18 AP2_ERF AtERF10 ARABIDOPSIS THALIANA RF DOMAIN PROTEIN 10, ERF domain protein 10 (.1) AT3G20310 79 / 9e-18 AP2_ERF ATERF7, ATERF-7 ethylene response factor 7 (.1) AT2G33710 78 / 1e-17 AP2_ERF Integrase-type DNA-binding superfamily protein (.1.2) AT1G43160 77 / 2e-17 AP2_ERF RAP2.6, RAP2.06 related to AP2 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018623 [exp] 146 / 2e-44 AT3G15210 104 / 9e-29 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) Lus10033664 [exp] 107 / 8e-29 AT3G15210 119 / 2e-33 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) Lus10015415 [exp] 89 / 2e-21 AT5G44210 134 / 8e-39 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Lus10035329 [exp] 87 / 3e-20 AT3G15210 115 / 8e-31 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) Lus10031526 [exp] 84 / 1e-19 AT1G50640 112 / 2e-30 ethylene responsive element binding factor 3 (.1) Lus10029987 [exp] 81 / 3e-19 AT3G15210 115 / 7e-33 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) Lus10035076 [exp] 79 / 2e-17 AT1G24590 143 / 2e-40 FOR SUPPRESSOR OF PHYTOCHROMEB-4 2, ENHANCER OF SHOOT REGENERATION 2, DORNROSCHEN-like (.1) Lus10043182 [exp] 78 / 2e-17 AT3G20310 111 / 6e-30 ethylene response factor 7 (.1) Lus10022426 [exp] 77 / 1e-16 AT5G61890 170 / 1e-51 Integrase-type DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G138100 [exp] 104 / 1e-27 AT5G44210 149 / 3e-45 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Potri.017G013700 [exp] 101 / 2e-26 AT5G44210 103 / 2e-27 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Potri.011G057000 [exp] 95 / 1e-23 AT5G44210 94 / 1e-23 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Potri.004G047600 [exp] 94 / 2e-23 AT5G44210 99 / 2e-25 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Potri.001G397200 [exp] 91 / 4e-22 AT3G15210 95 / 1e-23 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) Potri.004G047500 [exp] 87 / 2e-21 AT1G28360 157 / 3e-49 ERF domain protein 12 (.1) Potri.011G056900 [exp] 87 / 2e-21 AT1G28360 149 / 6e-46 ERF domain protein 12 (.1) Potri.011G115600 [exp] 87 / 5e-21 AT3G15210 92 / 7e-23 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) Potri.001G079800 [exp] 82 / 1e-18 AT5G51190 186 / 2e-58 Integrase-type DNA-binding superfamily protein (.1) Potri.003G150800 [exp] 82 / 1e-18 AT5G51190 185 / 7e-58 Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10039857 pacid=23165080 polypeptide=Lus10039857 locus=Lus10039857.g ID=Lus10039857.BGIv1.0 annot-version=v1.0 ATGGCGCCTCAGGCGGCGAAGGAGACGAAGGCGACGAAGAGCTCATCAGAAGTGGAGATGCATTACAGGGGAGTGAGGAAGCGGCCGTGGGGGAGATACG CCGCTGAGATTCGGGATCCGGGGAAGAAGACGCGCGTCTGGCTTGGAACCTTCGACACGGCCGAGGAAGCCGCCAGAGCTTACGACAAGGCGGCGCGTGA CTTCCGTGGGAATAAAGCCAAGACCAACTTCACTCTCCCCGACGAGATCTTCACTTTCAAGGTCGCCGTCGATGGGAATAAGCAGCAGCAGCTGCCGCCG CCGCAGCTGAGTCCTAGCTATAGCAGTAATGTAGAGTCGTCCAGCCCTCCATCGGCGGCGCGTGGGTTTCCTAGCGCGTCAAGGTTCCCGTTTGTCAACC AGAAGGAAAACGGCGGGGCTGTCTGGCTGTTTGACGGCATTCTCCGTCCGGATTTAGCGGCGGCCGCTCGACAGCAATTCTCTCTCCAGCTGGGTGGCGA GTTCAAATCCGGGTTCGGGTTGGGAACCGGGTCGCAGAGCAGCGAATCGGATTCATCCTCGGTGGTGGATTGTAAGCAACCTCCGCCTCCGGCCGCGAAA CCCATGGAGCTAAACCTAGATCTTAACCTGGCGCCGCCGATGAGCCACTAA
AA sequence Show only first row Show all	>Lus10039857 pacid=23165080 polypeptide=Lus10039857 locus=Lus10039857.g ID=Lus10039857.BGIv1.0 annot-version=v1.0 MAPQAAKETKATKSSSEVEMHYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDKAARDFRGNKAKTNFTLPDEIFTFKVAVDGNKQQQLPP PQLSPSYSSNVESSSPPSAARGFPSASRFPFVNQKENGGAVWLFDGILRPDLAAAARQQFSLQLGGEFKSGFGLGTGSQSSESDSSSVVDCKQPPPPAAK PMELNLDLNLAPPMSH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44210	AP2_ERF	AtERF9, ATERF-9	ERF DOMAIN PROTEIN- 9, erf dom...		Lus10039857 [exp]	0	1
AT3G15210	AP2_ERF	ATERF4, RAP2.5...	RELATED TO AP2 5, ethylene res...		Lus10033664 [exp]	4.4	0.8523
AT2G41410			Calcium-binding EF-hand family...		Lus10027261 [exp]	4.9	0.8235
AT5G61640		PMSR1, ATMSRA1	ARABIDOPSIS THALIANA METHIONIN...		Lus10033039 [exp]	9.7	0.8156
					Lus10039442 [exp]	13.5	0.8203
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Lus10014689 [exp]	16.4	0.7794
AT1G08315			ARM repeat superfamily protein...		Lus10008655 [exp]	17.7	0.7896
AT1G10140			Uncharacterised conserved prot...		Lus10018665 [exp]	19.8	0.7502
AT1G19180	ZIM	TIFY10A, JAZ1	jasmonate-zim-domain protein 1...		Lus10027648 [exp]	20.2	0.8027
AT5G64230			unknown protein		Lus10010617 [exp]	23.9	0.7632
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Lus10015178 [exp]	30.4	0.7771

Compare expression of checked genes

Lus10039857 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.