Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20570 221 / 2e-67 GARP ATGLK1, GLK1, GPRI1 ARABIDOPSIS GOLDEN2-LIKE 1, GBF's pro-rich region-interacting factor 1 (.1.2) AT5G44190 207 / 2e-62 GARP ATGLK2, GPRI2, GLK2 GBF'S PRO-RICH REGION-INTERACTING FACTOR 2, GOLDEN2-like 2 (.1) AT4G18020 114 / 4e-27 GARP APRR2 PSEUDO-RESPONSE REGULATOR 2, CheY-like two-component responsive regulator family protein (.1.2.3.4.5.6) AT2G25180 88 / 2e-18 GARP ARR12 response regulator 12 (.1) AT5G58080 87 / 7e-18 GARP ARR18 response regulator 18 (.1) AT5G59570 81 / 1e-16 GARP BOA BROTHER OF LUX ARRHYTHMO, Homeodomain-like superfamily protein (.1) AT4G16110 81 / 7e-16 GARP ARR2 response regulator 2 (.1) AT4G31920 79 / 1e-15 GARP ARR10 response regulator 10 (.1) AT2G01760 79 / 1e-15 GARP ARR14 response regulator 14 (.1) AT3G16857 79 / 2e-15 GARP ARR1 response regulator 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018649 [exp] 596 / 0 AT2G20570 222 / 6e-68 ARABIDOPSIS GOLDEN2-LIKE 1, GBF's pro-rich region-interacting factor 1 (.1.2) Lus10033642 [exp] 223 / 3e-68 AT2G20570 224 / 6e-69 ARABIDOPSIS GOLDEN2-LIKE 1, GBF's pro-rich region-interacting factor 1 (.1.2) Lus10040109 [exp] 126 / 3e-31 AT4G18020 371 / 8e-123 PSEUDO-RESPONSE REGULATOR 2, CheY-like two-component responsive regulator family protein (.1.2.3.4.5.6) Lus10011044 [exp] 119 / 5e-29 AT4G18020 366 / 3e-121 PSEUDO-RESPONSE REGULATOR 2, CheY-like two-component responsive regulator family protein (.1.2.3.4.5.6) Lus10003013 [exp] 117 / 3e-28 AT4G18020 376 / 6e-125 PSEUDO-RESPONSE REGULATOR 2, CheY-like two-component responsive regulator family protein (.1.2.3.4.5.6) Lus10030938 [exp] 115 / 2e-27 AT4G18020 377 / 2e-124 PSEUDO-RESPONSE REGULATOR 2, CheY-like two-component responsive regulator family protein (.1.2.3.4.5.6) Lus10005340 [exp] 83 / 1e-16 AT2G25180 414 / 3e-137 response regulator 12 (.1) Lus10041020 [exp] 83 / 1e-16 AT2G25180 412 / 3e-136 response regulator 12 (.1) Lus10036303 [exp] 82 / 2e-16 AT2G25180 294 / 4e-92 response regulator 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G015800 [exp] 278 / 2e-89 AT2G20570 259 / 2e-82 ARABIDOPSIS GOLDEN2-LIKE 1, GBF's pro-rich region-interacting factor 1 (.1.2) Potri.007G136901 [exp] 272 / 8e-87 AT2G20570 256 / 5e-81 ARABIDOPSIS GOLDEN2-LIKE 1, GBF's pro-rich region-interacting factor 1 (.1.2) Potri.001G146200 [exp] 137 / 3e-35 AT4G18020 447 / 2e-152 PSEUDO-RESPONSE REGULATOR 2, CheY-like two-component responsive regulator family protein (.1.2.3.4.5.6) Potri.003G087700 [exp] 110 / 9e-26 AT4G18020 389 / 1e-129 PSEUDO-RESPONSE REGULATOR 2, CheY-like two-component responsive regulator family protein (.1.2.3.4.5.6) Potri.010G105600 [exp] 87 / 5e-18 AT4G16110 376 / 2e-121 response regulator 2 (.1) Potri.018G021300 [exp] 86 / 2e-17 AT2G25180 364 / 2e-117 response regulator 12 (.1) Potri.006G262100 [exp] 85 / 2e-17 AT2G25180 381 / 6e-124 response regulator 12 (.1) Potri.008G135500 [exp] 83 / 1e-16 AT4G16110 370 / 3e-119 response regulator 2 (.1) Potri.010G001000 [exp] 81 / 6e-16 AT4G16110 602 / 0.0 response regulator 2 (.1) Potri.008G213500 [exp] 81 / 7e-16 AT4G16110 602 / 0.0 response regulator 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10039883 pacid=23165062 polypeptide=Lus10039883 locus=Lus10039883.g ID=Lus10039883.BGIv1.0 annot-version=v1.0 ATGCTTGCTGTATCTGTGGCGGCACCGTTGGGAGTCGACGAGAGCAGCTTCCAACAAGGGAAAATGATGGAGGAGGTGAATAATTTTAGCGACGGGTTTT TCTGCGACGGGAACCTACTGTTGATGGAGAGCATCGATTTCGACGATTTGTTCGTCGGAATGGATGATGGGGACGTGCTCCCGGATTTGGAGATGGATTC TGAGATTCTCACTGATTTCTCCCAGGAGTCCGAGGTAATAATACATGACGGAGCTACTACAACGGCGACCGGTTTCGAAACGGTCGGTAATGAGGGGGAA GATGTTGTTATTATTATTGAGGACGGTAAGGATAGTAACAAGGATGGTATGGGCACAGGAAAAGAGGAGGTGGGGCAGGCGGCGTCACCTTCGTCGTCGG CGTCGATGGTGATGAACCCGCCGGGTAGTGATGGTGTTAGATCAGGAGGTGAGAAGAGGAAGAAATCATCAACGGCTTCAAGTCATCAGTCGAATATTGG TGGCAAGAACAATAATCAAGGGAAGAGGAAAATGAAGGTGGATTGGACGCCAGAGTTACACAGAAGGTTCGTGCAAGCAGTGGAGCAGCTAGGCGTAGAT AAGGCTGTCCCTTCCAGAATCTTGGAGCTTATGGGTATCCACTGTCTCACTCGCCACAACGTCGCCAGCCACCTCCAAAAATATAGGTCACACCGGAAGC ATATACTGGCCCGTGAGGCGGAGGCGGCGAGTTGGAGCCACCGGCGGCAGATGTACGGTATCGCCGGAGTAACATCCCATTCCAATAGTGTAGATGTCAA CCATCAGAACCACCACCGGCGGCCGTGGAAACATGCACCGGCGACGGTGGGGTTTCCTCCCATGCACCACCATTTGGTTAGGCCGTTACATGTGTGGGGT CATCCTCATCAGCATCAGCCACTTTGGCACCATAACCGACGAGTGGGTGCAACCGGAGAAGGAGTAACACCGTCACCGGGAATTGCTAGCTTTCCACAGG CGGCGGCACCGGCTGCAGTACGACCACGGCGGCTGAATTACGACCACCACCAACGAGTTTTGAGTTTGTCCCATTCGCAGAAATTCACTACTCCGCCAAT TCTCAGCATCATCCCTCCTCCCCACGCCATGTACAAACCTGGACACGGCGTGTCTCCACCGGCGACATCTGCGTCCAGCCCGAACCAACCCTTCGACTTC CAGCCGTCAAATGAGAGCATAGACGCAGCCATCGGAGATGTTTTATCTAAGCCGTGGCTGCCACTCCCACTAGGGCTGAAACCTCCGGCGGTGGACACCG TTTTAGTGGAACTCCACTGCCAAGGAATATCTAATGTACCGCCACGGCCATCGACGACATCGTTTGGCAAGTAA
AA sequence Show only first row Show all	>Lus10039883 pacid=23165062 polypeptide=Lus10039883 locus=Lus10039883.g ID=Lus10039883.BGIv1.0 annot-version=v1.0 MLAVSVAAPLGVDESSFQQGKMMEEVNNFSDGFFCDGNLLLMESIDFDDLFVGMDDGDVLPDLEMDSEILTDFSQESEVIIHDGATTTATGFETVGNEGE DVVIIIEDGKDSNKDGMGTGKEEVGQAASPSSSASMVMNPPGSDGVRSGGEKRKKSSTASSHQSNIGGKNNNQGKRKMKVDWTPELHRRFVQAVEQLGVD KAVPSRILELMGIHCLTRHNVASHLQKYRSHRKHILAREAEAASWSHRRQMYGIAGVTSHSNSVDVNHQNHHRRPWKHAPATVGFPPMHHHLVRPLHVWG HPHQHQPLWHHNRRVGATGEGVTPSPGIASFPQAAAPAAVRPRRLNYDHHQRVLSLSHSQKFTTPPILSIIPPPHAMYKPGHGVSPPATSASSPNQPFDF QPSNESIDAAIGDVLSKPWLPLPLGLKPPAVDTVLVELHCQGISNVPPRPSTTSFGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20570	GARP	ATGLK1, GLK1, G...	ARABIDOPSIS GOLDEN2-LIKE 1, GB...		Lus10039883 [exp]	0	1
AT1G25440	CO	COL16	B-box type zinc finger protein...		Lus10041449 [exp]	1.4	0.9311
AT2G20570	GARP	ATGLK1, GLK1, G...	ARABIDOPSIS GOLDEN2-LIKE 1, GB...		Lus10018649 [exp]	2.0	0.8717
AT1G25440	CO	COL16	B-box type zinc finger protein...		Lus10034322 [exp]	7.0	0.8674
AT5G63160		BT1	BTB and TAZ domain protein 1 (...		Lus10033038 [exp]	8.6	0.8889
AT2G29970			Double Clp-N motif-containing ...		Lus10038320 [exp]	9.4	0.8564
AT1G47270	TUB	AtTLP6	tubby like protein 6 (.1.2)		Lus10033208 [exp]	9.5	0.8329
AT5G52020	AP2_ERF		Integrase-type DNA-binding sup...		Lus10024492 [exp]	10.2	0.7121
AT2G39210			Major facilitator superfamily ...		Lus10021512 [exp]	11.4	0.8832
					Lus10036703 [exp]	12.2	0.8706
AT1G66140	C2H2ZnF	ZFP4	zinc finger protein 4 (.1)		Lus10026597 [exp]	13.9	0.8276

Compare expression of checked genes

Lus10039883 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.