Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50150 553 / 0 Protein of Unknown Function (DUF239) (.1) AT1G70550 505 / 1e-179 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) AT1G10750 504 / 9e-179 Protein of Unknown Function (DUF239) (.1) AT1G23340 496 / 4e-176 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) AT5G18460 380 / 4e-130 Protein of Unknown Function (DUF239) (.1) AT3G13510 379 / 8e-130 Protein of Unknown Function (DUF239) (.1) AT1G55360 371 / 9e-127 Protein of Unknown Function (DUF239) (.1) AT5G56530 364 / 4e-124 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) AT2G44210 343 / 9e-116 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) AT2G44220 307 / 4e-102 Protein of Unknown Function (DUF239) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027683 [exp] 743 / 0 AT5G50150 575 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10042092 [exp] 558 / 0 AT5G50150 540 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10001248 [exp] 553 / 0 AT5G50150 580 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10013046 [exp] 509 / 8e-180 AT1G10750 642 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10029116 [exp] 508 / 2e-179 AT1G10750 642 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10004766 [exp] 389 / 3e-133 AT5G18460 603 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10010315 [exp] 383 / 6e-132 AT3G13510 626 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10003100 [exp] 375 / 1e-127 AT5G18460 593 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10013410 [exp] 363 / 1e-123 AT3G13510 708 / 0.0 Protein of Unknown Function (DUF239) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G080300 [exp] 593 / 0 AT5G50150 637 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.012G088300 [exp] 583 / 0 AT5G50150 592 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.008G188000 [exp] 535 / 0 AT1G70550 661 / 0.0 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) Potri.010G044300 [exp] 534 / 0 AT1G70550 664 / 0.0 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) Potri.013G050100 [exp] 397 / 1e-136 AT5G18460 635 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.019G024100 [exp] 393 / 5e-135 AT5G18460 622 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.001G233000 [exp] 377 / 4e-129 AT3G13510 621 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.003G221200 [exp] 373 / 1e-127 AT1G55360 716 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.001G003800 [exp] 365 / 1e-124 AT1G55360 689 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.006G233600 [exp] 201 / 1e-60 AT5G25950 310 / 3e-102 Protein of Unknown Function (DUF239) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03080 [flax] [poplar] Neprosin Neprosin
Representative CDS sequence Show only first row Show all	>Lus10039949 pacid=23173491 polypeptide=Lus10039949 locus=Lus10039949.g ID=Lus10039949.BGIv1.0 annot-version=v1.0 ATGGCTGCTTCTGCTACTATATCCCACATTTTTGTTGCTTTCCTACTTGTCTTTCTCTGTTCCTTCCCCATCGCAGTCTTGTCTGCTTCAAAAAACCAGA CTTTCAATCCAACAAAAGAGCTTCTCAAGCTCAAGAAAGTCAATGCTTATCTCCGGAAGATCAACAAGCCTCCGGTCAAGACAATTCAGAGCCCAGATGG GGATGTGATTGACTGTGTATTATCCCATCTCCAACCTGCATTTGATCATCCCAAGCTTAGAGGACAGAAACCCTTGGATGCACCAGAGAGGCGGCCAAAG GGTAATGAGACAACAGAGGCAATAGGGGAGAGCTCGCAACTATGGGCTGATTCAGGGGAATCCTGCCCACAAGGAACCGTTCCCATCAGAAGAACTACTG AGAAAGATCTTTTTAGAGCAAATAAGCTAAGGAGGTTTGGCAAGAAGAAACCCATCAGACATCTCAGGAGGGATTCAGCTGGAAATGGACATGAGCATGC AGTGGTGTTTGTTAATGGAGAACAGTACTATGGAGCAAAGGCGAATATAAACGTGAGCCCTGAGCTGTATGGAGACAACTATCCAAGATTCTTCACTTAT TGGACTACGGATGCATATCAAGCTACTGGATGCTACAACTTGCTTTGTTCTGGGTTTGTTCAAACAAACAATAGGATTGCCATTGGAGCTGCAATTTCAC CTAGGTCATCGTATCATGGAAGACAGTTTGATATTGGCCTAATGGTTTGGAAGGATCCGAAACATGGGCACTGGTGGCTGGAGTTTGGGTCAGGGCTGCT GGTGGGTTACTGGCCAGCATTTTTGTTCAGTCACTTGAGGAGCCATGCGAGCATGGTACAATTTGGAGGGGAGATAGTGAACTCAAGGTCAACAGGAGTA CACACTTACACCCAAATGGGAAGTGGTCATTTTGCTGATGAAGGGTTTGGGAAAGCATCCTATTTCAGGAACTTGCAGACAGTGGATTGGGACAATAATC TGCTGCCTCCCACAAACCTCCATCTATTAGCAGACCATCCTAATTGCTATGATATAAGGCAAGGCAGGAACAATATCTGGGGGACTTACTTTTACTATGG CGGTCCTGGAAGGAATGTAAGGTGTCCATAA
AA sequence Show only first row Show all	>Lus10039949 pacid=23173491 polypeptide=Lus10039949 locus=Lus10039949.g ID=Lus10039949.BGIv1.0 annot-version=v1.0 MAASATISHIFVAFLLVFLCSFPIAVLSASKNQTFNPTKELLKLKKVNAYLRKINKPPVKTIQSPDGDVIDCVLSHLQPAFDHPKLRGQKPLDAPERRPK GNETTEAIGESSQLWADSGESCPQGTVPIRRTTEKDLFRANKLRRFGKKKPIRHLRRDSAGNGHEHAVVFVNGEQYYGAKANINVSPELYGDNYPRFFTY WTTDAYQATGCYNLLCSGFVQTNNRIAIGAAISPRSSYHGRQFDIGLMVWKDPKHGHWWLEFGSGLLVGYWPAFLFSHLRSHASMVQFGGEIVNSRSTGV HTYTQMGSGHFADEGFGKASYFRNLQTVDWDNNLLPPTNLHLLADHPNCYDIRQGRNNIWGTYFYYGGPGRNVRCP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50150			Protein of Unknown Function (D...		Lus10039949 [exp]	0	1
AT5G50150			Protein of Unknown Function (D...		Lus10027683 [exp]	1.0	0.9242
AT1G63650	bHLH	EGL1, ATMYC-2, ...	ENHANCER OF GLABRA 3, basic he...		Lus10024631 [exp]	2.0	0.9225
AT5G50150			Protein of Unknown Function (D...		Lus10042092 [exp]	2.4	0.9202
AT4G00752			UBX domain-containing protein ...		Lus10036564 [exp]	2.8	0.9173
AT5G23720		PHS1	PROPYZAMIDE-HYPERSENSITIVE 1, ...		Lus10032545 [exp]	3.2	0.9159
AT5G58160			actin binding (.1)		Lus10007447 [exp]	3.9	0.8763
AT5G52600	MYB	AtMYB82	myb domain protein 82 (.1)		Lus10006647 [exp]	5.3	0.9036
AT5G14210			Leucine-rich repeat protein ki...		Lus10035225 [exp]	6.0	0.8795
AT5G50150			Protein of Unknown Function (D...		Lus10001248 [exp]	6.5	0.8772
AT1G60060			Serine/threonine-protein kinas...		Lus10029179 [exp]	6.7	0.8972

Compare expression of checked genes

Lus10039949 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.