Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18770 248 / 5e-78 MYB ATMYB98 myb domain protein 98 (.1) AT3G27785 186 / 3e-54 MYB PGA37, ATMYB118 PLANT GROWTH ACTIVATOR 37, myb domain protein 118 (.1) AT5G58850 178 / 2e-51 MYB ATMYB119 myb domain protein 119 (.1) AT5G11050 168 / 1e-47 MYB ATMYB64 myb domain protein 64 (.1) AT5G40360 164 / 5e-47 MYB ATMYB115 myb domain protein 115 (.1) AT3G09370 143 / 6e-38 MYB ATMYB3R-3, ATMYB3R3 myb domain protein 3R3, myb domain protein 3r-3 (.1.2) AT5G02320 138 / 6e-36 MYB MYB3R-5, ATMYB3R5 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3R5, myb domain protein 3r-5 (.1.2) AT5G11510 137 / 5e-35 MYB ATMYB3R-4, AtMYB3R4 myb domain protein 3R4, myb domain protein 3r-4 (.1.2) AT2G25230 128 / 1e-34 MYB ATMYB100 myb domain protein 100 (.1) AT4G32730 135 / 3e-34 MYB ATMYB3R-1, PC-MYB1, ATMYB3R1 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027695 [exp] 514 / 0 AT4G18770 276 / 1e-87 myb domain protein 98 (.1) Lus10042111 [exp] 288 / 1e-93 AT4G18770 249 / 8e-79 myb domain protein 98 (.1) Lus10002384 [exp] 285 / 2e-92 AT4G18770 250 / 7e-79 myb domain protein 98 (.1) Lus10040684 [exp] 172 / 3e-50 AT5G58850 261 / 5e-84 myb domain protein 119 (.1) Lus10018220 [exp] 170 / 1e-48 AT5G58850 257 / 7e-82 myb domain protein 119 (.1) Lus10005864 [exp] 165 / 1e-46 AT5G58850 209 / 3e-63 myb domain protein 119 (.1) Lus10013084 [exp] 159 / 4e-45 AT3G27785 183 / 6e-54 PLANT GROWTH ACTIVATOR 37, myb domain protein 118 (.1) Lus10022256 [exp] 154 / 1e-42 AT3G27785 175 / 2e-50 PLANT GROWTH ACTIVATOR 37, myb domain protein 118 (.1) Lus10025351 [exp] 138 / 5e-36 AT3G09370 456 / 8e-157 myb domain protein 3R3, myb domain protein 3r-3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G082000 [exp] 270 / 1e-86 AT4G18770 268 / 2e-85 myb domain protein 98 (.1) Potri.015G077700 [exp] 270 / 1e-86 AT4G18770 300 / 4e-98 myb domain protein 98 (.1) Potri.005G118500 [exp] 238 / 2e-74 AT4G18770 234 / 2e-72 myb domain protein 98 (.1) Potri.001G347200 [exp] 194 / 3e-57 AT3G27785 223 / 8e-68 PLANT GROWTH ACTIVATOR 37, myb domain protein 118 (.1) Potri.009G044100 [exp] 177 / 1e-50 AT5G58850 224 / 5e-68 myb domain protein 119 (.1) Potri.001G250000 [exp] 176 / 2e-50 AT5G58850 221 / 7e-67 myb domain protein 119 (.1) Potri.006G085600 [exp] 140 / 2e-36 AT5G02320 477 / 9e-164 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3R5, myb domain protein 3r-5 (.1.2) Potri.014G079300 [exp] 137 / 1e-35 AT4G32730 266 / 5e-80 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) Potri.006G241700 [exp] 137 / 9e-35 AT5G11510 696 / 0.0 myb domain protein 3R4, myb domain protein 3r-4 (.1.2) Potri.018G038000 [exp] 136 / 2e-34 AT4G32730 748 / 0.0 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10039966 pacid=23173434 polypeptide=Lus10039966 locus=Lus10039966.g ID=Lus10039966.BGIv1.0 annot-version=v1.0 ATGTGGTCGTTAAATCAGGTGTATGGAGGAGGAGGAGGAGGGTCAAATTTTGATTCTTTTGATGGTAATCTATATGGGTCCCCGTATTATTCCTCCTTGA ACTTGGACTGTTTTGAGTACGAGTGCAAGCCTTTTTCTGATATCAATATTGGATACATGAATTTCCAAAACAACAACAATAATTACTTTGAGAGGAATCT GATGTTGGGATCATCATCATCCAATAATAATCAGATGTTGAACCAGGAGGAAGCTGAAATCAAGCCAACTGCTGTTGCTGGTGCAGTGATGATGAATTTG GATGAGCTCAATCTCTACAACAACAACAACAACAATCACCAATGCGATCAGTATTACTTGGAGAGTAGTAATAATAATACCCATTTGAGCACTAGGCGTT CAGGATTAATGGCTCCTGCTACAGCCACCAGAAAGATTTGGAAAGGTCGGAAGAAGAACAACGTAGTCAAGGGGCAATGGACCGTCAATGAAGACAGGAT ACTAGTTCAACTTGTGGAACGGTATGGGATTAGGAAATGGTCTCATATTGCTCAGATGTTATCCGGAAGAATTGGAAAACAGTGTCGAGAGAGATGGCAC AATCACCTTAAACCTGATATCAAGGATACGTGGACAGAAGAAGAGGATAAAGTTCTGATACAGTCCCATGCAGAGATCAAAAACAAATGGGCAGAGATTG CAAAAAGTCTGCCGGGAAGAACAGAAAACTCCATTAAAAACCATTGGAATGCAACCAAGAGAAGGTTGTATTCCAAGGGCAAATGTCGTTCTAAGTACCC ATGCGGTTCAATTCTTCAAGACTACATCAAGAGTTTGAACTTGGATACTAGTGCTGCTGCTAACAACCTTATTGCTTCCAAAAGATCATCCTCATCATCA ACCATCCCCAACAAGGCTAATTCATCATTATTGCTTGATGATCAATATCCACAACACAATTTGTCTGAAAATGACAGATTGGTACCAACCTTTTATTACA ATAACGAAGAGGTCCCTGATTTTGGATTCGATGGTTGCAACCTCGACTCCTTGCTTGATGGGTTGCCACCAATTGTTGACGGCAAGGGCTTTGATGACCT GGATGTATCAATTGATGATCAACAAGCGTTAATTGTGGCTCCATCATTAAGAGACGACTTCGAGGTAGAAAAAGAGTTAGATTTGGTAGAGATGATGTCC GTGATAAAGAAATTAGGATTTTTTTAA
AA sequence Show only first row Show all	>Lus10039966 pacid=23173434 polypeptide=Lus10039966 locus=Lus10039966.g ID=Lus10039966.BGIv1.0 annot-version=v1.0 MWSLNQVYGGGGGGSNFDSFDGNLYGSPYYSSLNLDCFEYECKPFSDINIGYMNFQNNNNNYFERNLMLGSSSSNNNQMLNQEEAEIKPTAVAGAVMMNL DELNLYNNNNNNHQCDQYYLESSNNNTHLSTRRSGLMAPATATRKIWKGRKKNNVVKGQWTVNEDRILVQLVERYGIRKWSHIAQMLSGRIGKQCRERWH NHLKPDIKDTWTEEEDKVLIQSHAEIKNKWAEIAKSLPGRTENSIKNHWNATKRRLYSKGKCRSKYPCGSILQDYIKSLNLDTSAAANNLIASKRSSSSS TIPNKANSSLLLDDQYPQHNLSENDRLVPTFYYNNEEVPDFGFDGCNLDSLLDGLPPIVDGKGFDDLDVSIDDQQALIVAPSLRDDFEVEKELDLVEMMS VIKKLGFF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18770	MYB	ATMYB98	myb domain protein 98 (.1)		Lus10039966 [exp]	0	1

Compare expression of checked genes

Lus10039966 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.