Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32460 214 / 6e-64 MYB ATMYB101, AtM1 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2) AT5G55020 209 / 2e-61 MYB ATMYB120 myb domain protein 120 (.1) AT3G11440 206 / 3e-60 MYB AtMYB65 myb domain protein 65 (.1) AT4G26930 202 / 3e-60 MYB ATMYB97 myb domain protein 97 (.1) AT5G06100 200 / 4e-59 MYB ATMYB33 myb domain protein 33 (.1.2.3) AT2G26960 189 / 5e-55 MYB ATMYB81 myb domain protein 81 (.1) AT1G22640 152 / 9e-43 MYB AtMYB3 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) AT3G01530 149 / 1e-42 MYB ATMYB57 myb domain protein 57 (.1) AT3G30210 150 / 3e-42 MYB ATMYB121 myb domain protein 121 (.1) AT3G27810 149 / 3e-42 MYB AtMYB3, ATMYB21 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021539 [exp] 614 / 0 AT2G32460 226 / 5e-67 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2) Lus10026787 [exp] 215 / 3e-64 AT3G11440 301 / 4e-96 myb domain protein 65 (.1) Lus10036103 [exp] 213 / 1e-63 AT3G11440 307 / 1e-98 myb domain protein 65 (.1) Lus10026142 [exp] 221 / 5e-63 AT3G11440 370 / 5e-115 myb domain protein 65 (.1) Lus10008685 [exp] 216 / 7e-63 AT3G11440 357 / 3e-115 myb domain protein 65 (.1) Lus10027189 [exp] 208 / 8e-61 AT2G32460 243 / 1e-73 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2) Lus10035275 [exp] 203 / 6e-59 AT2G32460 233 / 5e-70 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2) Lus10023711 [exp] 154 / 6e-43 AT3G24310 247 / 2e-81 MYB DOMAIN PROTEIN 71, myb domain protein 305 (.1) Lus10022259 [exp] 150 / 1e-42 AT3G27810 243 / 3e-81 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 21 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G036000 [exp] 218 / 2e-64 AT5G06100 402 / 1e-134 myb domain protein 33 (.1.2.3) Potri.003G189700 [exp] 215 / 2e-63 AT5G06100 410 / 8e-138 myb domain protein 33 (.1.2.3) Potri.009G018700 [exp] 213 / 2e-63 AT5G06100 286 / 1e-90 myb domain protein 33 (.1.2.3) Potri.002G228700 [exp] 212 / 5e-63 AT2G32460 234 / 6e-71 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2) Potri.001G224500 [exp] 208 / 3e-61 AT3G11440 298 / 1e-94 myb domain protein 65 (.1) Potri.013G130900 [exp] 197 / 4e-56 AT5G06100 177 / 1e-48 myb domain protein 33 (.1.2.3) Potri.001G346600 [exp] 156 / 3e-45 AT3G27810 242 / 1e-81 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 21 (.1) Potri.010G064000 [exp] 152 / 6e-43 AT3G24310 255 / 4e-85 MYB DOMAIN PROTEIN 71, myb domain protein 305 (.1) Potri.017G071500 [exp] 149 / 1e-42 AT3G27810 233 / 2e-78 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 21 (.1) Potri.004G115600 [exp] 149 / 3e-42 AT3G30210 227 / 9e-75 myb domain protein 121 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10040063 pacid=23173553 polypeptide=Lus10040063 locus=Lus10040063.g ID=Lus10040063.BGIv1.0 annot-version=v1.0 ATGATATCAACGACAAACAAATTAGGGGAAGGAGGATTGTCAGGGTTTTGCACAAGTGTTGGTGGAGGAGGAGAATTTAATGCATTTATAAATAATAATA ATGTAGCTGAGAACCCACAGGAGAAAGGCGGGAAGTTGGGAATTAACAACAATGGTGGAAACCGTGGGTTGAAGAAAGGTCCTTGGACGGCGGAAGAAGA TGCAGTGCTAATGGAATATGTGAAGAAGCATGGAGAAGGGAACTGGAACGCAGTTCAAAGGAATTCAGGGCTTAATCGTTGTGGAAAGAGTTGTAGACTA CGTTGGGCTAATCACTTGCGGCCTAATCTTAAGAAGGGTTCTTTCACCCCTCAAGAGGAACGACTCATTATCGAACTCCATGCCAAAATGGGCAACAAAT GGGCTCGCATGGCTAACCTGCTTCCTGGAAGAACAGACAATGAAATTAAGAACTATTGGAATACAAGAATTAAGAGGCACCAAAGACAAGGACTCCCTCT GTATCCTCCTGACATCCAACCTCAACAATATTTCCAGCCACCTCCTAACTCCTACCATCAATTTCCACCAGTCACCAACTCTTTTGCCTTCCAATCAGAG GCAGAAGAGCAAGTTTCTCGCCAGGATGCCTCTTCCTCTATCAATGTTTTGTCACTTTCCGAATACCCTCAACACCATCAACATCAACATAATCATTACT CAAACTCAACTCCTAGCCCATTCACTTTCCAAACCCAAAAAATTGATCCATTTTCCACCCATGTTTCCCCTCTCCTTGACTACTCCTGCTCAAGGCCAAC TCCGATCCTGCAATCTGCTAATCGCTTCAAGAGATTTGCTTCTTGTGGCGACATTGCCAATTCTCTGGTGGAAACTAACAACAAACATGTTCCTCATTCT CATCATTTCCCTAGTGTGGCCACTGCTCCGCCTCTTCCACCTCATCATCCTATCCACTCTCCCAACAATAACAACAACAACATTGCACATTTCAGAAATT CTCATCACCCACCACAACGACTATACAACAACAACCTCCTATTGAGCAGCAGGGTCCGTAGTAATCAGTTCCACCAAGAGATACAGAAGGAGAATGAAGA AATGTGCTCTCTTTTGGCTACCATGTCTCGGCAGCTCCCTTCTAACCACAACTACGGCGATGTTACTATGGTCCACCCTGGTCAATTCAATACTACACAA TTTGATAAGGACAGTAAACATGATGAAAACAACAACAACAACAACAACAACAACAACAACATGATAATGAGGAATAAGGACAAGGCTCACAACATCTTGT TGGCCAATACAATAACAAATGGAGGTAGCATGTATGGAGGGTTGTTGGAGGATCTTGGCAGGAGGCGAATGCAAACTCGGTAG
AA sequence Show only first row Show all	>Lus10040063 pacid=23173553 polypeptide=Lus10040063 locus=Lus10040063.g ID=Lus10040063.BGIv1.0 annot-version=v1.0 MISTTNKLGEGGLSGFCTSVGGGGEFNAFINNNNVAENPQEKGGKLGINNNGGNRGLKKGPWTAEEDAVLMEYVKKHGEGNWNAVQRNSGLNRCGKSCRL RWANHLRPNLKKGSFTPQEERLIIELHAKMGNKWARMANLLPGRTDNEIKNYWNTRIKRHQRQGLPLYPPDIQPQQYFQPPPNSYHQFPPVTNSFAFQSE AEEQVSRQDASSSINVLSLSEYPQHHQHQHNHYSNSTPSPFTFQTQKIDPFSTHVSPLLDYSCSRPTPILQSANRFKRFASCGDIANSLVETNNKHVPHS HHFPSVATAPPLPPHHPIHSPNNNNNNIAHFRNSHHPPQRLYNNNLLLSSRVRSNQFHQEIQKENEEMCSLLATMSRQLPSNHNYGDVTMVHPGQFNTTQ FDKDSKHDENNNNNNNNNNNMIMRNKDKAHNILLANTITNGGSMYGGLLEDLGRRRMQTR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32460	MYB	ATMYB101, AtM1	ARABIDOPSIS THALIANA MYB 1, my...		Lus10040063 [exp]	0	1
AT3G60460	MYB	DUO1	DUO POLLEN 1, myb-like HTH tra...		Lus10009780 [exp]	1.0	0.9237
AT5G24090		ATCHIA	chitinase A (.1)		Lus10023534 [exp]	2.4	0.8491
AT3G28630			Protein of unknown function (D...		Lus10001124 [exp]	3.2	0.8201
AT2G37550		ASP1, AGD7	yeast pde1 suppressor 1, ARF-G...		Lus10036211 [exp]	3.5	0.8091
AT5G38260			Protein kinase superfamily pro...		Lus10025492 [exp]	4.5	0.7964
AT4G34950			Major facilitator superfamily ...		Lus10010805 [exp]	4.6	0.8303
AT1G74830			Protein of unknown function, D...		Lus10033123 [exp]	6.6	0.8429
AT5G24090		ATCHIA	chitinase A (.1)		Lus10040419 [exp]	6.6	0.8196
AT1G66930			Protein kinase superfamily pro...		Lus10008362 [exp]	7.3	0.8464
AT2G31450		ATNTH1	DNA glycosylase superfamily pr...		Lus10000431 [exp]	9.8	0.7860

Compare expression of checked genes

Lus10040063 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.