Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18020 371 / 1e-122 GARP APRR2 PSEUDO-RESPONSE REGULATOR 2, CheY-like two-component responsive regulator family protein (.1.2.3.4.5.6) AT5G44190 130 / 6e-33 GARP ATGLK2, GPRI2, GLK2 GBF'S PRO-RICH REGION-INTERACTING FACTOR 2, GOLDEN2-like 2 (.1) AT2G20570 115 / 8e-28 GARP ATGLK1, GLK1, GPRI1 ARABIDOPSIS GOLDEN2-LIKE 1, GBF's pro-rich region-interacting factor 1 (.1.2) AT5G58080 93 / 1e-19 GARP ARR18 response regulator 18 (.1) AT3G16857 86 / 2e-17 GARP ARR1 response regulator 1 (.1.2) AT2G25180 85 / 3e-17 GARP ARR12 response regulator 12 (.1) AT4G16110 85 / 5e-17 GARP ARR2 response regulator 2 (.1) AT2G01760 83 / 6e-17 GARP ARR14 response regulator 14 (.1) AT5G59570 81 / 1e-16 GARP BOA BROTHER OF LUX ARRHYTHMO, Homeodomain-like superfamily protein (.1) AT2G40970 77 / 1e-15 GARP MYBC1 Homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030938 [exp] 1023 / 0 AT4G18020 377 / 2e-124 PSEUDO-RESPONSE REGULATOR 2, CheY-like two-component responsive regulator family protein (.1.2.3.4.5.6) Lus10003013 [exp] 683 / 0 AT4G18020 376 / 6e-125 PSEUDO-RESPONSE REGULATOR 2, CheY-like two-component responsive regulator family protein (.1.2.3.4.5.6) Lus10011044 [exp] 630 / 0 AT4G18020 366 / 3e-121 PSEUDO-RESPONSE REGULATOR 2, CheY-like two-component responsive regulator family protein (.1.2.3.4.5.6) Lus10039883 [exp] 129 / 4e-32 AT2G20570 241 / 7e-75 ARABIDOPSIS GOLDEN2-LIKE 1, GBF's pro-rich region-interacting factor 1 (.1.2) Lus10018649 [exp] 112 / 3e-26 AT2G20570 222 / 6e-68 ARABIDOPSIS GOLDEN2-LIKE 1, GBF's pro-rich region-interacting factor 1 (.1.2) Lus10033642 [exp] 110 / 4e-26 AT2G20570 224 / 6e-69 ARABIDOPSIS GOLDEN2-LIKE 1, GBF's pro-rich region-interacting factor 1 (.1.2) Lus10036303 [exp] 89 / 3e-18 AT2G25180 294 / 4e-92 response regulator 12 (.1) Lus10016846 [exp] 87 / 8e-18 AT3G16857 603 / 0.0 response regulator 1 (.1.2) Lus10019058 [exp] 87 / 8e-18 AT2G25180 290 / 1e-90 response regulator 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G146200 [exp] 666 / 0 AT4G18020 447 / 2e-152 PSEUDO-RESPONSE REGULATOR 2, CheY-like two-component responsive regulator family protein (.1.2.3.4.5.6) Potri.003G087700 [exp] 654 / 0 AT4G18020 389 / 1e-129 PSEUDO-RESPONSE REGULATOR 2, CheY-like two-component responsive regulator family protein (.1.2.3.4.5.6) Potri.007G136901 [exp] 146 / 1e-38 AT2G20570 256 / 5e-81 ARABIDOPSIS GOLDEN2-LIKE 1, GBF's pro-rich region-interacting factor 1 (.1.2) Potri.017G015800 [exp] 112 / 2e-26 AT2G20570 259 / 2e-82 ARABIDOPSIS GOLDEN2-LIKE 1, GBF's pro-rich region-interacting factor 1 (.1.2) Potri.006G262100 [exp] 89 / 3e-18 AT2G25180 381 / 6e-124 response regulator 12 (.1) Potri.006G188000 [exp] 88 / 6e-18 AT2G25180 386 / 8e-126 response regulator 12 (.1) Potri.018G111300 [exp] 87 / 1e-17 AT2G25180 348 / 3e-111 response regulator 12 (.1) Potri.008G213500 [exp] 86 / 2e-17 AT4G16110 602 / 0.0 response regulator 2 (.1) Potri.018G021300 [exp] 86 / 3e-17 AT2G25180 364 / 2e-117 response regulator 12 (.1) Potri.010G001000 [exp] 86 / 3e-17 AT4G16110 602 / 0.0 response regulator 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0304 [flax] [poplar] CheY PF00072 [flax] [poplar] Response_reg Response regulator receiver domain CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10040109 pacid=23173982 polypeptide=Lus10040109 locus=Lus10040109.g ID=Lus10040109.BGIv1.0 annot-version=v1.0 ATGGTTTGCACTGCTAATGATTTGTCAGAATGGAAGGACTTTCCAAAGGGTCTTAGTGTCCTTCTTCTGGATGAGGACATCAATTCAGCTGCTGAGATAA AATCAAAACTTGAGGCCATGGACTATACTGTTTCTACTTTCTGCAACGAGGAGAAAGCTTTATCTGCATTCTCAGACAAACCTGAAAGCTTCCATGCTGC TGTAGTTGAGGTAACTGTAAGTGATGGAAATGGGAGCTTTAAGTTTCTCGAAAATGCTAAGGATTTGCCTATTATTATGATTTCAGACGTTAATTGCCTT AGCATGATGATGAAATGTATCTCGCTAGGGGCAATGGAGTTCCTTCATAAACCACTCTCTGAAGACAAGCTAAGGAATCTATGGCAGCATGTAGTTCACA AGGCCTTTAATGCAGGATCAAGTGTGCAATCCGAACCAATGAAGCGTGTAAAAGATTCAGTAGCCTCCATGTCTGAGATAAAAAAAGAGATCGAGGTTAT GGATAATGGAAATTCAGATGAAATGGAAGAAGTTTCTCCTGCTGATGAAAATAGTGGTCAGTCTTCTGATAGTGATAAGTACCCGGCTCCTTCAACTCCT CAACTGAAACAAGGCCAACGGTTATTAGATGATGTGGATTGTCAAGACCATACTCACTGTTCAACAGAGAAAGAAAGTGCTGTGCAGGAGGGGGAGTCTA AGTCTGTCGAAACTTCATTCACAATGGCTGAAATAAGTGTACAGGTTGATACTGGGAACTTAACCGATAGTAAAATCAAAGAGGATGATGACTTGACCAG TGGTGCCAACATTGATCCTCAAAATATCCAGAACAAGTCCAATGGTGGTGCTGAAGATGGAGCTAAAGCTTCTTCTTGTCATAATACTTCTGGAGTGACT AAAGCTAACCGGAAGAAAACGAAGGTAGATTGGACTTCTGACCTGCACAGAAAGTTTGTAAAGGCTGTGGAGCAATTAGGTGTAGATCATGCAATTCCCT CGAAAATACTGGAGCTTATGAAAGTTGAGGGCTTGACTAGGCATAACATAGCTAGCCATCTTCAGAAATATAGAATGCACAGGAGACACATTATACCTAC AGAAGATGAACGGAGGTGGCCACATCAACACAAAGATGGAACAAAGCGGCGTTACTATCTACAGAAACCTATTATTGCCTACCCTCCTCCTTATCACCAA CAACACTCAACTCATGCTACTTTCCCACCCAACTATGTACATCCCATGTGGGGAGCAGCAACTGGTAATCACCCACCACCTGGAGTACACTTGTGGGGTC CTCCTGGATACTCCCCATGGCCATCATTTCCTGCAGCGTTGCATGCAGATGCATGGGGTTGCCCTGTGATGCCACAGCCACAATTTCCTTATCCTTGCTT GCCTCAAAATCAACCTGGGTATCATGGTGTCGCCTTGGCTGATAACCACTGCACTATGTCACAAAATCCATATGACTTTCAGCCGGCAGAGGAAGTGATT GACAAAGTAGTGAAAGAAGCCATCAACGAACCATGGCTGCCATTACCAATAGGCCTAAAGCCTCCTTCCATTGACAGTGTAGTAGCTGAACTGTGCAGGC AAGGCATCTCTACCGTTCCTCCTCACATCGATGGCTCTACTTGA
AA sequence Show only first row Show all	>Lus10040109 pacid=23173982 polypeptide=Lus10040109 locus=Lus10040109.g ID=Lus10040109.BGIv1.0 annot-version=v1.0 MVCTANDLSEWKDFPKGLSVLLLDEDINSAAEIKSKLEAMDYTVSTFCNEEKALSAFSDKPESFHAAVVEVTVSDGNGSFKFLENAKDLPIIMISDVNCL SMMMKCISLGAMEFLHKPLSEDKLRNLWQHVVHKAFNAGSSVQSEPMKRVKDSVASMSEIKKEIEVMDNGNSDEMEEVSPADENSGQSSDSDKYPAPSTP QLKQGQRLLDDVDCQDHTHCSTEKESAVQEGESKSVETSFTMAEISVQVDTGNLTDSKIKEDDDLTSGANIDPQNIQNKSNGGAEDGAKASSCHNTSGVT KANRKKTKVDWTSDLHRKFVKAVEQLGVDHAIPSKILELMKVEGLTRHNIASHLQKYRMHRRHIIPTEDERRWPHQHKDGTKRRYYLQKPIIAYPPPYHQ QHSTHATFPPNYVHPMWGAATGNHPPPGVHLWGPPGYSPWPSFPAALHADAWGCPVMPQPQFPYPCLPQNQPGYHGVALADNHCTMSQNPYDFQPAEEVI DKVVKEAINEPWLPLPIGLKPPSIDSVVAELCRQGISTVPPHIDGST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18020	GARP	APRR2	PSEUDO-RESPONSE REGULATOR 2, C...		Lus10040109 [exp]	0	1
AT3G20650			mRNA capping enzyme family pro...		Lus10039035 [exp]	1.4	0.8253
AT2G27090			Protein of unknown function (D...		Lus10026763 [exp]	4.9	0.8181
AT3G48190		PIG1, ATATM, AT...	pcd in male gametogenesis 1, A...		Lus10043339 [exp]	7.7	0.7780
AT2G40480			Plant protein of unknown funct...		Lus10029056 [exp]	8.8	0.7754
AT5G15080			Protein kinase superfamily pro...		Lus10006643 [exp]	9.3	0.8133
AT1G29400		AML5	MEI2-like protein 5 (.1.2)		Lus10020769 [exp]	9.5	0.7818
AT4G08920		OOP2, HY4, BLU1...	OUT OF PHASE 2, ELONGATED HYPO...		Lus10033446 [exp]	9.5	0.7888
AT4G18020	GARP	APRR2	PSEUDO-RESPONSE REGULATOR 2, C...		Lus10030938 [exp]	11.4	0.6917
AT4G28600		NPGR2	no pollen germination related ...		Lus10023748 [exp]	11.4	0.7956
AT5G03250			Phototropic-responsive NPH3 fa...		Lus10040409 [exp]	14.1	0.7790

Compare expression of checked genes

Lus10040109 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.