Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72740 118 / 2e-31 MYB Homeodomain-like/winged-helix DNA-binding family protein (.1.2) AT1G17520 100 / 9e-25 MYB Homeodomain-like/winged-helix DNA-binding family protein (.1) AT5G67580 94 / 3e-22 MYB ATTBP3, TRB2, ATTRB2 TELOMERE-BINDING PROTEIN 3, TELOMERE REPEAT BINDING FACTOR 2, Homeodomain-like/winged-helix DNA-binding family protein (.1.2) AT3G49850 89 / 2e-20 MYB TBP2, TRB3, ATTRB3 TELOMERE-BINDING PROTEIN 2, telomere repeat binding factor 3 (.1) AT1G49950 89 / 2e-20 MYB ATTRB1, TRB1 telomere repeat binding factor 1 (.1.2.3) AT1G17460 52 / 3e-07 MYB TRFL3 TRF-like 3 (.1.2) AT1G72650 48 / 4e-06 MYB TRFL6 TRF-like 6 (.1.2) AT5G58340 47 / 8e-06 MYB myb-like HTH transcriptional regulator family protein (.1.2) AT1G15720 44 / 5e-05 MYB TRFL5 TRF-like 5 (.1) AT2G37025 44 / 8e-05 TRFL8 TRF-like 8 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030935 [exp] 431 / 3e-153 AT1G72740 171 / 5e-51 Homeodomain-like/winged-helix DNA-binding family protein (.1.2) Lus10027621 [exp] 226 / 1e-73 AT1G72740 107 / 1e-27 Homeodomain-like/winged-helix DNA-binding family protein (.1.2) Lus10019260 [exp] 99 / 1e-23 AT5G67580 201 / 5e-63 TELOMERE-BINDING PROTEIN 3, TELOMERE REPEAT BINDING FACTOR 2, Homeodomain-like/winged-helix DNA-binding family protein (.1.2) Lus10011546 [exp] 98 / 1e-23 AT5G67580 199 / 2e-62 TELOMERE-BINDING PROTEIN 3, TELOMERE REPEAT BINDING FACTOR 2, Homeodomain-like/winged-helix DNA-binding family protein (.1.2) Lus10012092 [exp] 94 / 3e-22 AT1G49950 182 / 3e-56 telomere repeat binding factor 1 (.1.2.3) Lus10025203 [exp] 93 / 4e-22 AT1G49950 175 / 3e-53 telomere repeat binding factor 1 (.1.2.3) Lus10033775 [exp] 93 / 8e-21 AT5G15340 635 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014653 [exp] 92 / 2e-20 AT5G15340 634 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024200 [exp] 56 / 2e-08 AT1G15720 65 / 5e-11 TRF-like 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G147400 [exp] 161 / 4e-48 AT1G17520 209 / 2e-66 Homeodomain-like/winged-helix DNA-binding family protein (.1) Potri.018G066300 [exp] 161 / 6e-48 AT1G72740 186 / 6e-58 Homeodomain-like/winged-helix DNA-binding family protein (.1.2) Potri.014G004900 [exp] 97 / 3e-23 AT5G67580 224 / 6e-72 TELOMERE-BINDING PROTEIN 3, TELOMERE REPEAT BINDING FACTOR 2, Homeodomain-like/winged-helix DNA-binding family protein (.1.2) Potri.007G005000 [exp] 96 / 7e-23 AT5G67580 212 / 1e-66 TELOMERE-BINDING PROTEIN 3, TELOMERE REPEAT BINDING FACTOR 2, Homeodomain-like/winged-helix DNA-binding family protein (.1.2) Potri.001G292700 [exp] 95 / 1e-22 AT1G49950 273 / 2e-91 telomere repeat binding factor 1 (.1.2.3) Potri.009G087000 [exp] 94 / 3e-22 AT1G49950 277 / 5e-93 telomere repeat binding factor 1 (.1.2.3) Potri.013G154500 [exp] 51 / 4e-07 AT5G58340 88 / 4e-18 myb-like HTH transcriptional regulator family protein (.1.2) Potri.001G170200 [exp] 46 / 2e-05 AT1G72650 399 / 5e-131 TRF-like 6 (.1.2) Potri.003G063700 [exp] 46 / 2e-05 AT1G72650 333 / 7e-106 TRF-like 6 (.1.2) Potri.006G126300 [exp] 45 / 3e-05 AT2G37025 120 / 2e-29 TRF-like 8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10040111 pacid=23174069 polypeptide=Lus10040111 locus=Lus10040111.g ID=Lus10040111.BGIv1.0 annot-version=v1.0 ATGGGGAATCCGAAGCAAAAGTGGACGGCGGAGGAGGAGGAAGCTTTGCGAGCTGGTATTGCCAAACATGGCACCGGAAAGTGGAAGTTAATTCAACAGG ACCCTGAGTTCAACCCTTACCTATCCACTCGCTCCAACATCGATCTCAAGGACAAGTGGCGGAACATTATCGTCACCCCCGGTGAGAAATCGCGGACGCC GAAGACTAAAGTGCCCACCGCTGATGATGTCGTTGCTACTCCACAGCCGATCTCCCAAGTTTTAGATGCTCCTCCTGCTCCTATTGTTTCTCCTTCAGTT CCTGCCCCAGTTCCTACTCCACCTGTTCTTCTTCCTGTCACTACGGATGAAGTTGCCAAAATTGCTCCGGTTGATCAAAGGCATGAGTTGCCACAAAATG GTAGGAAGCAAGTAACTTCAAGGTTGAGGGTTTTGGTAAACAGGGATAAACTTGAAAAGGTCCAGAATTCCTACAGGTTTAAAGAAAGTACGCCAAGTGT TGTTGCAAAAGCACCTTCTCCAAAGAAACAAGTGCAAACTAAAGGGTTACAAAGGAGTGATTCTGCTACTCCAATTGAAACCTTAGAGGAAGTTGCTCGG GCTGCTGCCAGCATAATCGCTGAAGCAGAGACCAAAGCTGTTCGTGCCGCAGAGAAAGTTCACGAATTGGAAATAGCGTCGATACTGAGAGAGGAGACGG AGTCAATATTGCTTTTCTCTCAACAGATATACGACAGATGTAAGTCCGAATCCATTTGCTCGTCCTATCACACTACCTATTCCAATTTCTGCGTCTTTTG TGTCCGACCCAAGGTACCGAAATCATGCATTTTTTTAATGTGGCAGGTATGCAAGGAGAGACGATATTGA
AA sequence Show only first row Show all	>Lus10040111 pacid=23174069 polypeptide=Lus10040111 locus=Lus10040111.g ID=Lus10040111.BGIv1.0 annot-version=v1.0 MGNPKQKWTAEEEEALRAGIAKHGTGKWKLIQQDPEFNPYLSTRSNIDLKDKWRNIIVTPGEKSRTPKTKVPTADDVVATPQPISQVLDAPPAPIVSPSV PAPVPTPPVLLPVTTDEVAKIAPVDQRHELPQNGRKQVTSRLRVLVNRDKLEKVQNSYRFKESTPSVVAKAPSPKKQVQTKGLQRSDSATPIETLEEVAR AAASIIAEAETKAVRAAEKVHELEIASILREETESILLFSQQIYDRCKSESICSSYHTTYSNFCVFCVRPKVPKSCIFLMWQVCKERRY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72740	MYB		Homeodomain-like/winged-helix ...		Lus10040111 [exp]	0	1
AT1G14650			SWAP (Suppressor-of-White-APri...		Lus10013966 [exp]	10.2	0.7237
AT4G29270			HAD superfamily, subfamily III...		Lus10043042 [exp]	16.1	0.6801
AT4G34100			RING/U-box superfamily protein...		Lus10019839 [exp]	16.5	0.6863
AT3G09320			DHHC-type zinc finger family p...		Lus10024377 [exp]	20.1	0.6583
AT5G18550	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10002880 [exp]	26.7	0.6829
AT5G27650			Tudor/PWWP/MBT superfamily pro...		Lus10015177 [exp]	28.1	0.6736
AT1G28520	VOZ	ATVOZ1, VOZ1	vascular plant one zinc finger...		Lus10033657 [exp]	36.3	0.6643
AT2G27040		OCP11, AGO4	OVEREXPRESSOR OF CATIONIC PERO...		Lus10000295 [exp]	38.5	0.6286
AT2G31890		ATRAP	RAP (.1)		Lus10006143 [exp]	49.4	0.5982
					Lus10042671 [exp]	51.1	0.5992

Compare expression of checked genes

Lus10040111 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.