Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47040 1360 / 0 LON2 lon protease 2 (.1) AT5G26860 450 / 6e-144 LON1, LON_ARA_ARA lon protease 1 (.1) AT3G05790 425 / 4e-134 LON4 lon protease 4 (.1) AT3G05780 402 / 9e-126 LON3 lon protease 3 (.1) AT4G23940 43 / 0.001 FtsH extracellular protease family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003009 [exp] 1464 / 0 AT5G47040 1420 / 0.0 lon protease 2 (.1) Lus10011038 [exp] 1461 / 0 AT5G47040 1413 / 0.0 lon protease 2 (.1) Lus10001084 [exp] 1084 / 0 AT5G47040 994 / 0.0 lon protease 2 (.1) Lus10031414 [exp] 452 / 4e-144 AT5G26860 1402 / 0.0 lon protease 1 (.1) Lus10001083 [exp] 365 / 1e-120 AT5G47040 374 / 9e-125 lon protease 2 (.1) Lus10010919 [exp] 368 / 6e-113 AT5G26860 1275 / 0.0 lon protease 1 (.1) Lus10032404 [exp] 45 / 0.0002 AT4G23940 1267 / 0.0 FtsH extracellular protease family (.1) Lus10023066 [exp] 44 / 0.0008 AT4G23940 1246 / 0.0 FtsH extracellular protease family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G148400 [exp] 1416 / 0 AT5G47040 1460 / 0.0 lon protease 2 (.1) Potri.003G086000 [exp] 1414 / 0 AT5G47040 1461 / 0.0 lon protease 2 (.1) Potri.005G017600 [exp] 434 / 3e-137 AT5G26860 1428 / 0.0 lon protease 1 (.1) Potri.013G008900 [exp] 431 / 7e-136 AT5G26860 1467 / 0.0 lon protease 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA) CL0178 [flax] [poplar] PUA PF02190 [flax] [poplar] LON_substr_bdg ATP-dependent protease La (LON) substrate-binding domain CL0329 [flax] [poplar] S5 PF05362 [flax] [poplar] Lon_C Lon protease (S16) C-terminal proteolytic domain
Representative CDS sequence Show only first row Show all	>Lus10040131 pacid=23174025 polypeptide=Lus10040131 locus=Lus10040131.g ID=Lus10040131.BGIv1.0 annot-version=v1.0 ATGGCGGAACCGGTGGAGCTTCCCACTCGATTGGCGATCCTTCCTTTCAGGAACAAAGTGCTTCTTCCCGGCGCCATCATTCGTATCCGTTGCACTTCTC CGAGCAGTGTGAAATTGGTGGAGCAAGAGTTATGGCAGCGAGAAGACAAGGGTTTGATTGGGGTTTTGCCAGTTCAGGACGCTGGTTCTGACTCTGCCGA GGCCGCCGTAGGGTCCATTTTATCTCATGGTGTTGGAAGTGAATCCGGGGGTGATAGAAGCTCCACAGCTCAGGTTGGAACCTCGGATAATCCTAAAGCC GATGGTAAAAACCAGCCGGATGATATTCGCTGGCACAATAGGGGGGTTGCAGCTCGTGCATTGCATTTGTCAAGAGGGGTGGAAAAACCGAGTGGAAGGG TAACTTACATAGTCGTGCTTGAAGGTTTGTGCAGATTTAGTGTTCAGGAACTTAGCAAAAAGGGGATGTATTACACTGCACGAATATCTCCGGTTGAGAT GACCAAGGCTGAGATGGAACAGGTGGACCAAGATCCTGATTTTGTTGCACTGTCTCGCCAGTTCAAAGCTACTGCCATGGAACTTATCTCTGTACTTGAG CAGAAGCAGAAAGCTGTCGCTAGGACCAAAGTACTTTTGGAGACGGTTCCCATTCACAAGTTGGCAGATATTTTTGTGGCTAGTTTTGAGGTAAGTTTCG AAGAGCAGTTATCTATGTTGGATTCTGTGGATCCGAAAGCAAGGCTTTTGAAAGCTACTGAGCTGGTTGACAGTCATTTACAGTCAATACGTGTAGCAGA AAAGATTACCCAAAAGGTTGAAGGTCAGTTATCGAAGTCACAGAAGGAGTTTCTTCTTCGTCAGCAGATGCGTGCTATAAAAGAAGAGCTTGGTGACAAT GACGATGATGAGGATGATGTTGCTGCACTAGAAAGAAAAATGGAAAGTGCAGGAATGCCGCCAAATATCTGGAAACATGCTCGGAGGGAATTAAGGCAGA TCAAGAAGATGCAACCTCAACAACCTGGATACAACAGTTCGCGTAGTTATTTGGAGCTTCTTGCTGAACTCCCCTGGCAGAAGGCAAGTGAAGAATTAGA ATTGGACTTGAAAGCTGCAAAGGAACGTCTTGATAGTGAGCATTACGGTCTTGTCAAGGTCAAGCAACGGATAATCGAATATCTAGCTGTGCGCAAGCTG AAACCAGATGCAAGAGGCCCAGTATTGTGCTTTGTTGGCCCACCAGGTGTTGGGAAAACATCTTTGGCTTCATCTATTGCCGCTGCCTTGGGCAGAAAAT TCATCCGCATTTCTCTTGGTGGTGTTAAGGATGAGGCTGATATTAGAGGGCATAGGAGAACTTATATTGGAAGCATGCCGGGGCGTCTTATTGACGGCTT AAAGAAAGTGGGTGTCTGCAATCCGGTCATGCTGTTGGATGAGGTTGACAAAACTGGCTCTGATGTCCGTGGTGATCCTGCCTCAGCACTACTCGAGGTC CTGGACCCTGAACAGAATAAAACATTCAACGATCATTATTTGAACGTTCCTTTTGACCTTTCTAAGGTGATTTTCGTGGCAACAGCTAATAGGGCACAAC CTATTCCTCCTCCTCTGCTAGATCGCATGGAAGTTATTGAGCTTCCTGGTTATACTCCTGAAGAAAAGCTCAAAATAGCCATGCGACATATAATACCTCG AGTGTTGGATCAACATGGATTGAGCTCCGATTTCCTTCAAGTTCCAGAGGCTATGGTCAAACTAGTAATTCAGAGGTACACTCGGGAGGCTGGTGTTCGT AATCTAGAGAGACACTTGGCTGCCTTGGCTCGAGCATCAGCTGTAAGACTCGCAGAACAAGGCCAAACTGTCCCATTGAGCAAGGATGTTCATCGGCTTG AACCACCATTGTTACAGAACGGACTGGCTGAGGGAGCTGAGATGGAAATGGACGTCATTTCAATTGGTGAAAACAGTCGCGAGATATCTGAGAGTTACAG ACTTGACTCATTGGTCGTGGATGAGCCTATGCTCGAGAAAGTTCTAGGGCCTCCAAGGTTTGATGATAAAGAGGCTGCAGAACGTGTTGCGAGTCCGGGT ATTTCAGTTGGACTTGTTTGGACTTCCTTTGGAGGGGAGGTCCAATTTGTGGAGGCCACATCAATGGCTGGAAGGGGTGAATTGCATCTCACCGGGCAAC TTGGAGATGTTATAAAGGAATCAGCACAAATAGCGTTGACCTGGGTGCGAGCCAGGGCATCCGATCTTAAATTGGCAGCAGGCCAGGAGATTAGTCTTCT CGAAGGCAGGGATGTCCACATACATTTTCCTGCGGGAGCCATCCCAAAGGATGGGCCGTCAGCTGGTGTGACACTTGTAACCGCTCTTGTTTCATTGTTC AGTCAGCAGAGAGTAAGAGCAGATACAGCAATGACTGGAGAAATGACTTTGAGAGGACTTGTGCTTCCTGTTGGTGGGATTAAAGATAAGATATTGGCAG CTCACCGTTATGGAATCAAGAGGGGGGTTCTGCCGGAGAGAAACTTGAAGGACTTGGTAGAAGTACCAGCTGCGGTCCTTAGAAGCCTAGAGCGAAGAGA GTGGAAGACGTTCTGGAACAAGCATTCGAAGGTGGATGTCCATGGAGGCAGCAGTCGAGATTATGACACTGTACAGAAGAGAAGTAGCAACTGA
AA sequence Show only first row Show all	>Lus10040131 pacid=23174025 polypeptide=Lus10040131 locus=Lus10040131.g ID=Lus10040131.BGIv1.0 annot-version=v1.0 MAEPVELPTRLAILPFRNKVLLPGAIIRIRCTSPSSVKLVEQELWQREDKGLIGVLPVQDAGSDSAEAAVGSILSHGVGSESGGDRSSTAQVGTSDNPKA DGKNQPDDIRWHNRGVAARALHLSRGVEKPSGRVTYIVVLEGLCRFSVQELSKKGMYYTARISPVEMTKAEMEQVDQDPDFVALSRQFKATAMELISVLE QKQKAVARTKVLLETVPIHKLADIFVASFEVSFEEQLSMLDSVDPKARLLKATELVDSHLQSIRVAEKITQKVEGQLSKSQKEFLLRQQMRAIKEELGDN DDDEDDVAALERKMESAGMPPNIWKHARRELRQIKKMQPQQPGYNSSRSYLELLAELPWQKASEELELDLKAAKERLDSEHYGLVKVKQRIIEYLAVRKL KPDARGPVLCFVGPPGVGKTSLASSIAAALGRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKKVGVCNPVMLLDEVDKTGSDVRGDPASALLEV LDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLKIAMRHIIPRVLDQHGLSSDFLQVPEAMVKLVIQRYTREAGVR NLERHLAALARASAVRLAEQGQTVPLSKDVHRLEPPLLQNGLAEGAEMEMDVISIGENSREISESYRLDSLVVDEPMLEKVLGPPRFDDKEAAERVASPG ISVGLVWTSFGGEVQFVEATSMAGRGELHLTGQLGDVIKESAQIALTWVRARASDLKLAAGQEISLLEGRDVHIHFPAGAIPKDGPSAGVTLVTALVSLF SQQRVRADTAMTGEMTLRGLVLPVGGIKDKILAAHRYGIKRGVLPERNLKDLVEVPAAVLRSLERREWKTFWNKHSKVDVHGGSSRDYDTVQKRSSN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47040		LON2	lon protease 2 (.1)		Lus10040131 [exp]	0	1
AT5G47040		LON2	lon protease 2 (.1)		Lus10001084 [exp]	1.0	0.9847
AT4G16130		ATISA1, ARA1	arabinose kinase (.1)		Lus10020178 [exp]	2.4	0.9697
AT4G16130		ATISA1, ARA1	arabinose kinase (.1)		Lus10026983 [exp]	3.9	0.9410
AT4G08570			Heavy metal transport/detoxifi...		Lus10039419 [exp]	4.0	0.9197
AT2G37770		ChlAKR, AKR4C9	Chloroplastic aldo-keto reduct...		Lus10010884 [exp]	4.4	0.8894
AT5G19120			Eukaryotic aspartyl protease f...		Lus10021939 [exp]	4.9	0.9378
AT1G15060			Uncharacterised conserved prot...		Lus10013496 [exp]	6.5	0.9059
AT3G06500		A/N-InvC	alkaline/neutral invertase C, ...		Lus10017095 [exp]	6.5	0.9199
AT5G24490			30S ribosomal protein, putativ...		Lus10015569 [exp]	8.4	0.9162
AT5G21170		AKINBETA1	5'-AMP-activated protein kinas...		Lus10041287 [exp]	8.9	0.8965

Compare expression of checked genes

Lus10040131 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.