Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16770 218 / 1e-70 MYB ATMYB9 myb domain protein 9 (.1.2) AT3G02940 218 / 2e-70 MYB ATMYB107 myb domain protein 107 (.1) AT4G17785 217 / 9e-70 MYB ATMYB39 myb domain protein 39 (.1) AT5G10280 215 / 2e-69 MYB ATMYB92, AtMYB64 myb domain protein 92 (.1) AT1G34670 214 / 2e-68 MYB ATMYB93 myb domain protein 93 (.1) AT5G65230 209 / 2e-67 MYB ATMYB53 myb domain protein 53 (.1) AT4G21440 209 / 5e-67 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 102 (.1) AT4G12350 202 / 6e-65 MYB ATMYB42 myb domain protein 42 (.1) AT4G22680 201 / 9e-65 MYB ATMYB85 myb domain protein 85 (.1) AT4G05100 202 / 1e-64 MYB ATMYB74 myb domain protein 74 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001093 [exp] 328 / 1e-113 AT5G16770 232 / 4e-74 myb domain protein 9 (.1.2) Lus10011031 [exp] 233 / 8e-76 AT5G16770 223 / 3e-70 myb domain protein 9 (.1.2) Lus10003001 [exp] 237 / 7e-74 AT3G07840 362 / 1e-118 Pectin lyase-like superfamily protein (.1) Lus10041142 [exp] 219 / 3e-71 AT1G34670 315 / 2e-106 myb domain protein 93 (.1) Lus10036472 [exp] 217 / 2e-70 AT5G10280 307 / 1e-103 myb domain protein 92 (.1) Lus10018418 [exp] 209 / 6e-67 AT4G21440 334 / 5e-114 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10002593 [exp] 207 / 2e-66 AT4G21440 330 / 2e-112 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10039743 [exp] 200 / 1e-64 AT4G21440 296 / 2e-100 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10038913 [exp] 197 / 1e-63 AT1G66230 247 / 3e-82 myb domain protein 20 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G139900 [exp] 227 / 5e-74 AT5G16770 254 / 7e-83 myb domain protein 9 (.1.2) Potri.003G094200 [exp] 226 / 2e-73 AT5G16770 251 / 1e-81 myb domain protein 9 (.1.2) Potri.007G093900 [exp] 222 / 3e-72 AT1G34670 289 / 6e-96 myb domain protein 93 (.1) Potri.005G074500 [exp] 220 / 3e-71 AT1G34670 290 / 1e-96 myb domain protein 93 (.1) Potri.005G164900 [exp] 219 / 4e-71 AT1G34670 309 / 7e-104 myb domain protein 93 (.1) Potri.002G096800 [exp] 211 / 7e-68 AT1G34670 305 / 2e-102 myb domain protein 93 (.1) Potri.019G050900 [exp] 209 / 7e-67 AT5G16770 279 / 2e-92 myb domain protein 9 (.1.2) Potri.004G033100 [exp] 208 / 2e-66 AT4G21440 293 / 4e-97 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.011G125900 [exp] 208 / 2e-66 AT4G21440 281 / 1e-92 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.019G118200 [exp] 205 / 3e-65 AT4G05100 278 / 7e-92 myb domain protein 74 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10040139 pacid=23174071 polypeptide=Lus10040139 locus=Lus10040139.g ID=Lus10040139.BGIv1.0 annot-version=v1.0 ATGGCGAGGCCACCATGCTGCGGAGAAGATCAGGACGACAACAAGGTGAAGAAAGGGCCATGGACGGCTGAGGAAGACGAGAAGCTCGTCCACTTCATTA CCAACAACGGTCACACCAACTGGAAGTCCCTGCCTAAGCTGGCCGGTCTCAACCGCTGCGGCAAGAGCTGCCGTTTGCGCTGGACCAATTACCTCCGTCC AGATATCAAGCGCGGCAAGTTCTCCGACGACGAGGAGCGCCTCATCATCAACCTCCACTCCGTCCTCGGCAACAAATGGTCGAGAATAGCGACACACATG CCAGGGAGAACGGACAACGAAATAAAAAACTATTATAACACTCACATAAGAAAGAAGCTGTTGCAAATGGGTATAGACCCACAGACACACAAGCCGAGGA CAGATCACCTCCAGCTGAATCAGTTCCTTAATCTTTCCCAGTTGATCGGGGCCGCTCATCAGCTCACCGCTCTTTTTAACAATAACAACAATATGGAACC GCAACAAAACCTTTTTACCCAGCATGCAGTGGGTCCTCCGGCTGCGGCTCAGGCTCAGGTTCAGGTGATGCAGAATCTGCTGAACCTTCTCAACCCAACA TCGTTACCGCTGTCGTCGATGTCAACGCAAGAAGGGTAG
AA sequence Show only first row Show all	>Lus10040139 pacid=23174071 polypeptide=Lus10040139 locus=Lus10040139.g ID=Lus10040139.BGIv1.0 annot-version=v1.0 MARPPCCGEDQDDNKVKKGPWTAEEDEKLVHFITNNGHTNWKSLPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSDDEERLIINLHSVLGNKWSRIATHM PGRTDNEIKNYYNTHIRKKLLQMGIDPQTHKPRTDHLQLNQFLNLSQLIGAAHQLTALFNNNNNMEPQQNLFTQHAVGPPAAAQAQVQVMQNLLNLLNPT SLPLSSMSTQEG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16770	MYB	ATMYB9	myb domain protein 9 (.1.2)		Lus10040139 [exp]	0	1
AT5G55180			O-Glycosyl hydrolases family 1...		Lus10018306 [exp]	1.0	0.9341
AT5G16770	MYB	ATMYB9	myb domain protein 9 (.1.2)		Lus10001093 [exp]	2.8	0.9250
AT2G18570			UDP-Glycosyltransferase superf...		Lus10041713 [exp]	3.0	0.9248
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10003226 [exp]	3.5	0.9169
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10004177 [exp]	5.8	0.8797
AT5G09530		PRP10, PELPK1	proline-rich protein 10, Pro-G...		Lus10018841 [exp]	10.5	0.9045
AT1G74460			GDSL-like Lipase/Acylhydrolase...		Lus10001643 [exp]	12.6	0.8676
AT5G09530		PRP10, PELPK1	proline-rich protein 10, Pro-G...		Lus10017818 [exp]	13.0	0.9034
AT5G16770	MYB	ATMYB9	myb domain protein 9 (.1.2)		Lus10011031 [exp]	13.3	0.8623
AT2G39350		ABCG1	ATP-binding cassette G1, ABC-2...		Lus10023465 [exp]	16.0	0.8986

Compare expression of checked genes

Lus10040139 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.