Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41710 392 / 9e-134 AP2_ERF Integrase-type DNA-binding superfamily protein (.1.2.3) AT3G54320 159 / 6e-44 AP2_ERF ATWRI1, ASML1, WRI1 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) AT1G16060 142 / 1e-38 AP2_ERF ADAP ARIA-interacting double AP2 domain protein (.1.2) AT1G79700 141 / 3e-38 AP2_ERF Integrase-type DNA-binding superfamily protein (.1.2) AT1G51190 142 / 6e-37 AP2_ERF PLT2 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) AT3G20840 139 / 9e-36 AP2_ERF PLT1 PLETHORA 1, Integrase-type DNA-binding superfamily protein (.1) AT5G57390 139 / 1e-35 AP2_ERF PLT5, EMK, CHO1, AIL5 PLETHORA 5, EMBRYOMAKER, CHOTTO 1, AINTEGUMENTA-like 5 (.1) AT5G10510 136 / 7e-35 AP2_ERF PLT3, AIL6 PLETHORA 3, AINTEGUMENTA-like 6 (.1.2.3) AT5G65510 135 / 9e-35 AP2_ERF PLT7, AIL7 PLETHORA 7, AINTEGUMENTA-like 7 (.1) AT5G17430 135 / 2e-34 AP2_ERF BBM BABY BOOM, Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000965 [exp] 745 / 0 AT2G41710 433 / 4e-150 Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10001553 [exp] 161 / 3e-45 AT1G16060 331 / 3e-112 ARIA-interacting double AP2 domain protein (.1.2) Lus10008939 [exp] 161 / 3e-44 AT3G54320 303 / 2e-98 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10028880 [exp] 160 / 9e-44 AT3G54320 298 / 1e-96 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10030671 [exp] 154 / 7e-42 AT3G54320 280 / 5e-90 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10013268 [exp] 146 / 4e-40 AT3G54320 275 / 3e-90 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10005253 [exp] 149 / 6e-40 AT3G54320 282 / 6e-91 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10036719 [exp] 149 / 7e-40 AT3G54320 288 / 3e-93 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10041618 [exp] 146 / 9e-40 AT1G79700 310 / 1e-104 Integrase-type DNA-binding superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G056400 [exp] 468 / 9e-164 AT2G41710 466 / 3e-163 Integrase-type DNA-binding superfamily protein (.1.2.3) Potri.006G049700 [exp] 462 / 2e-161 AT2G41710 462 / 1e-161 Integrase-type DNA-binding superfamily protein (.1.2.3) Potri.008G011900 [exp] 159 / 1e-44 AT3G54320 359 / 3e-122 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Potri.010G247200 [exp] 157 / 2e-43 AT3G54320 337 / 8e-113 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Potri.018G102200 [exp] 150 / 2e-41 AT1G16060 289 / 5e-96 ARIA-interacting double AP2 domain protein (.1.2) Potri.017G078600 [exp] 150 / 4e-41 AT3G54320 289 / 2e-94 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Potri.003G185300 [exp] 148 / 1e-40 AT1G16060 291 / 5e-97 ARIA-interacting double AP2 domain protein (.1.2) Potri.001G041500 [exp] 148 / 2e-40 AT1G16060 279 / 1e-91 ARIA-interacting double AP2 domain protein (.1.2) Potri.006G179900 [exp] 147 / 3e-40 AT1G16060 276 / 3e-91 ARIA-interacting double AP2 domain protein (.1.2) Potri.010G092800 [exp] 148 / 6e-40 AT3G54320 259 / 2e-82 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10040140 pacid=23174075 polypeptide=Lus10040140 locus=Lus10040140.g ID=Lus10040140.BGIv1.0 annot-version=v1.0 ATGGCTTCACCTTCGTCGGACCCGGGGCTGAAGCATGAGGTAGGAGCCGGAAGTAGCAGCGGTGGAGGGGAGAGTTCGGAGGCGGTCGTTGCTAATGATC AGATGTTACTGTACAGAGGATTGAAGAAAGCCAAGAAGGACAGAGGCTGCACCGCTAAAGAACGAATCAGCAAAATGCCTCCTTGTACAGCTGGTAAACG CAGCTCCATTTACCGCGGAGTCACTAGGCATAGATGGACTGGTCGCTATGAAGCTCACCTTTGGGATAAAAGTACCTGGAATCAGAACCAAAATAAGAAA GGAAAACAAGGGGCATATGATGACGAAGAGGCTGCAGCTAGAGCATATGACCTTGCTGCCTTGAAATATTGGGGTCCTGGCACACTCATTAACTTTCCTG TTTCAGATTATACGAGAGATCTTGAAGAAATGCAGAATGTCTCTAGGGAGGAGTACTTGGCATCTCTTCGGAGAAAGAGTAGCGGGTATTCAAGAGGTAT CTCCAAATATCGTGGGCTATCCAGCTCACCTTTGTCACTTATCCTTTCTCCTTCGACATGTTTGTGGCCATCACAAAGTAGTCGATGGGACTTGTCGATC GGTCGTATGGCAGGACCTGGATACTTCAGCAATGTGAATTACGGTGATGAACCTGAGAACCAATATATGGGCAGTTTTTGTATAGAGAGGAAGATCGATC TAACATCTCATATCAAATGGTGGGCTACTAATAAAAGCCGCCAAGTAGAATCGGTCTCCAGACCGTCAGACGAGCCCAGACATAGCTCTGGAGAAGAAAT CAACCGAGAACTCAGAACCTTAGAGTGGGCAGTACAGCCCACCGAGCCATTCCAGATGCCTCGCCTGGGAGTTTCATCTTGTGAAGGAAAAAAGAATCAC AAAGTCTCGGCCTTGAGCATACTCTCGCAATCCATGGCATACAAGAGTTTACAAGAGAAAGCATCGACAAGGAAGGAAATCAATAACACCGAGAATGACG AGAACGAAAACAAGATGGCTGTTAACAAGACATTGGTGGACTATGCCGGCAAATCTGTTGACCAATCAACAAGTCATGATGATGATAACAGACTTGGAAT AACAGGGATGAATGCATCAGCCGCATTGTGTATCCAGAGAAACATGTACCCATTGACTTCCTTCTTGTCCGCCCCTCCACTTGTTAACAACTATAACAGC ATCGGCTCTTTGGCTGACCCTCTCCTTTGGTCGTCCCTTGTTCCTGCTCTTCCTCCCGGAATGTCGACGAGTTCCGAGGTTCCCAAGACTGAAGCAAGCT CAACCTATACGTTGTTCCAGCCAGAGGAGTGA
AA sequence Show only first row Show all	>Lus10040140 pacid=23174075 polypeptide=Lus10040140 locus=Lus10040140.g ID=Lus10040140.BGIv1.0 annot-version=v1.0 MASPSSDPGLKHEVGAGSSSGGGESSEAVVANDQMLLYRGLKKAKKDRGCTAKERISKMPPCTAGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKK GKQGAYDDEEAAARAYDLAALKYWGPGTLINFPVSDYTRDLEEMQNVSREEYLASLRRKSSGYSRGISKYRGLSSSPLSLILSPSTCLWPSQSSRWDLSI GRMAGPGYFSNVNYGDEPENQYMGSFCIERKIDLTSHIKWWATNKSRQVESVSRPSDEPRHSSGEEINRELRTLEWAVQPTEPFQMPRLGVSSCEGKKNH KVSALSILSQSMAYKSLQEKASTRKEINNTENDENENKMAVNKTLVDYAGKSVDQSTSHDDDNRLGITGMNASAALCIQRNMYPLTSFLSAPPLVNNYNS IGSLADPLLWSSLVPALPPGMSTSSEVPKTEASSTYTLFQPEE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41710	AP2_ERF		Integrase-type DNA-binding sup...		Lus10040140 [exp]	0	1
AT3G28730		NFD, SSRP1, ATH...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10018073 [exp]	1.7	0.9345
AT1G77720		PPK1	putative protein kinase 1 (.1)		Lus10028085 [exp]	6.1	0.9379
AT1G65710			unknown protein		Lus10010952 [exp]	9.1	0.9350
AT1G77720		PPK1	putative protein kinase 1 (.1)		Lus10025634 [exp]	9.5	0.9292
AT5G11300		CYC2BAT, CYCA2;...	CYCLIN A2;2, mitotic-like cycl...		Lus10008103 [exp]	9.8	0.9300
AT1G07970			unknown protein		Lus10038462 [exp]	11.7	0.9241
AT5G44040			unknown protein		Lus10032776 [exp]	12.7	0.9263
AT2G38620		CDKB1;2	cyclin-dependent kinase B1;2 (...		Lus10003236 [exp]	14.1	0.9211
AT5G06150		CYC1BAT, CYCB1;...	cyclin B 1;2, Cyclin family pr...		Lus10010483 [exp]	16.1	0.9270
AT1G26760		SDG35, ATXR1	SET domain protein 35 (.1)		Lus10037155 [exp]	24.0	0.9226

Compare expression of checked genes

Lus10040140 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.