Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04770 502 / 1e-172 CAT6, ATCAT6 ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, cationic amino acid transporter 6 (.1) AT3G10600 491 / 4e-168 CAT7 cationic amino acid transporter 7 (.1) AT4G21120 410 / 2e-136 CAT1, AAT1 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) AT2G34960 353 / 8e-115 CAT5 cationic amino acid transporter 5 (.1) AT1G17120 351 / 1e-113 CAT8 cationic amino acid transporter 8 (.1) AT3G03720 217 / 2e-62 CAT4 cationic amino acid transporter 4 (.1.2) AT1G58030 208 / 4e-59 CAT2 cationic amino acid transporter 2 (.1) AT5G36940 207 / 9e-59 CAT3 cationic amino acid transporter 3 (.1) AT1G05940 199 / 2e-56 CAT9 cationic amino acid transporter 9 (.1) AT1G31830 47 / 3e-05 Amino acid permease family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000962 [exp] 1079 / 0 AT5G04770 543 / 0.0 ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, cationic amino acid transporter 6 (.1) Lus10023271 [exp] 419 / 1e-139 AT4G21120 902 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Lus10001581 [exp] 403 / 7e-131 AT4G21120 915 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Lus10005574 [exp] 367 / 3e-119 AT1G17120 811 / 0.0 cationic amino acid transporter 8 (.1) Lus10042817 [exp] 352 / 1e-113 AT4G21120 731 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Lus10020320 [exp] 216 / 4e-62 AT1G58030 912 / 0.0 cationic amino acid transporter 2 (.1) Lus10005671 [exp] 215 / 2e-61 AT1G58030 958 / 0.0 cationic amino acid transporter 2 (.1) Lus10020322 [exp] 215 / 3e-61 AT1G58030 949 / 0.0 cationic amino acid transporter 2 (.1) Lus10013638 [exp] 210 / 1e-59 AT1G58030 964 / 0.0 cationic amino acid transporter 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G083700 [exp] 807 / 0 AT5G04770 509 / 7e-176 ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, cationic amino acid transporter 6 (.1) Potri.001G150700 [exp] 798 / 0 AT5G04770 519 / 2e-179 ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, cationic amino acid transporter 6 (.1) Potri.010G241000 [exp] 506 / 4e-174 AT3G10600 781 / 0.0 cationic amino acid transporter 7 (.1) Potri.008G017100 [exp] 506 / 8e-174 AT3G10600 778 / 0.0 cationic amino acid transporter 7 (.1) Potri.015G133100 [exp] 398 / 1e-131 AT4G21120 845 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Potri.012G131300 [exp] 397 / 3e-131 AT4G21120 848 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Potri.013G030833 [exp] 393 / 1e-129 AT4G21120 833 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Potri.013G030900 [exp] 393 / 1e-129 AT4G21120 833 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Potri.003G154600 [exp] 377 / 1e-123 AT2G34960 870 / 0.0 cationic amino acid transporter 5 (.1) Potri.001G378500 [exp] 365 / 6e-119 AT1G17120 785 / 0.0 cationic amino acid transporter 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF00324 [flax] [poplar] AA_permease Amino acid permease
Representative CDS sequence Show only first row Show all	>Lus10040142 pacid=23173845 polypeptide=Lus10040142 locus=Lus10040142.g ID=Lus10040142.BGIv1.0 annot-version=v1.0 ATGGCTGATCAACACGGCGGCGTGATGACCGCGATTTCCGCCGCCGCGGCATCGCTCTGCGCCTACTTCAAAACCCTCTTGACGCAGACCCCTCACCGTC TCCGGAAGAGGGCGATGGCCACCTGGACGCCGGAGCAGGAGCTCACCCAGGTCCGCCTCCGCTCCGGCGCCGACATGAAGAGGAAGCTCCAGTGGTACGA CCTCATGGCGCTCGGGATCGGCGGAATGCTCGGCGTCGGAGTGTTCGTCACCACCGGCTTTGTGGCCAACGGCGTTTCCGGGCCGGCTGTTTTCATCTCC TACATCATCGCCGGCATTTCCGCAGTGCTGTCGTCGCTCTGCTACGCCGAATTCTCCGTCCAAATCCCCGTCGCCGGAGGCGCCTTCAGTTACCTCCGCG TCACTTTCGGGGAATTCATAGGATATTTTGCTGGTGCAAACATACTGATGGAGTATGTACTGTCAAATGCGGCAGTAGCAAGGAGCTTTACTGATTACCT ATGCCATGCAGTTGGAGTGAACGACTCTAATTCATGGAGGGTTGAAGTCGATGCCCTTCTTCCAGGCTACAACTACCTGGATTTCCCTGCTGTTGCTCTT ATTCTCCTTCTCACACTCTGCCTTTGCCACAGCACAAAGGAGAGCTCAATGCTGAACCTTGTCATGACAGTGTTCCACGTGATGTTCTTTGCCTTCATCA TTATTGCTGGCTTCTACAATGGGAGCGGCAAGAACTTGGTCAAGCCAAGTGGGCTGGCTCCTTTTGGTGTTAAGGGTGTCCTTGATGGTGCCGCCATTGT CTACTTCAGCTACATTGGGTACGACTCGGTTTCGACCATGGCCGAAGAGATTCAGAACCCTTCCAAGGCTCTGCCGCTTGGGATCGTCGGCTCTGTTCTG GTTGTGTGCACTCTGTATTGCTTGATGGCTTTGGCTCTTTGTGTCATGGTTCCTTACAATTTGATACCGAAAGAAGCATCATTCTCTGTAGCATTCCAAG AGATTGGGTGGGGATGGGCGAGCAACATCGTTGGAGCCGGTGCGAGTTTGGGGATAGTTGCTTCTCTTCTTGTTGCCATGCTTGGCCAAGCTAGATACCT CTGCGTGATCGGAAGGGCTCGACTAGTTCCATCGTGGCTCGCCAAGGTCAATCCCACCACCGGAACTCCCCTGAACGCTACCCTATTCTTAGGACTTTGC ACAGCATCAATTGCTCTGTTCACGGACCTAAGCATCGTGTTCGACATGATCTCAATCAGCACATTGCTAGTATTCTACCTAGTAGCCAATGCACTCATCT ACCGACGATACGTGATCATCAGCCAAAATCATCCTTCCCAAACCCTATTATTCCTCTTCCTCCTCACCGCCACAGCAATGGGACTCTCGGTGGCATGGAA GCTCCAAGGACAATGGTGGGGGCTACCGGTGTTTGGAGGCGCGATGATCGCCATCACAGGGTTGTTCCAGATGATGGTGCCATACATTAGTCACGCGGAC GAAGGGTGGTTGGTGCCGTTGATGCCTTGGCCGGCTGCCATATCAATATTCCTCAATGTATTCCTCATGACGACGCTAAAGATGCTGTCTTTCCAAAGGT TTGCCATATGGGGGTGTTTGATAACCGTGTTCTATGTTCTGTATGGTGTTCATTCGACCTACAACGCAGAGGAGGTCGCAGTTGATGGCCGAGTTGTTGA TCATGATGAAATCCTACAGCACAATGTGGATTCCTCATCGCCAATTCATCAACAGAATGTTGTTCATAAGCTAGAGATGCAAATGGTATGA
AA sequence Show only first row Show all	>Lus10040142 pacid=23173845 polypeptide=Lus10040142 locus=Lus10040142.g ID=Lus10040142.BGIv1.0 annot-version=v1.0 MADQHGGVMTAISAAAASLCAYFKTLLTQTPHRLRKRAMATWTPEQELTQVRLRSGADMKRKLQWYDLMALGIGGMLGVGVFVTTGFVANGVSGPAVFIS YIIAGISAVLSSLCYAEFSVQIPVAGGAFSYLRVTFGEFIGYFAGANILMEYVLSNAAVARSFTDYLCHAVGVNDSNSWRVEVDALLPGYNYLDFPAVAL ILLLTLCLCHSTKESSMLNLVMTVFHVMFFAFIIIAGFYNGSGKNLVKPSGLAPFGVKGVLDGAAIVYFSYIGYDSVSTMAEEIQNPSKALPLGIVGSVL VVCTLYCLMALALCVMVPYNLIPKEASFSVAFQEIGWGWASNIVGAGASLGIVASLLVAMLGQARYLCVIGRARLVPSWLAKVNPTTGTPLNATLFLGLC TASIALFTDLSIVFDMISISTLLVFYLVANALIYRRYVIISQNHPSQTLLFLFLLTATAMGLSVAWKLQGQWWGLPVFGGAMIAITGLFQMMVPYISHAD EGWLVPLMPWPAAISIFLNVFLMTTLKMLSFQRFAIWGCLITVFYVLYGVHSTYNAEEVAVDGRVVDHDEILQHNVDSSSPIHQQNVVHKLEMQMV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04770		CAT6, ATCAT6	ARABIDOPSIS THALIANA CATIONIC ...		Lus10040142 [exp]	0	1
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10025412 [exp]	5.7	0.8139
AT3G62930			Thioredoxin superfamily protei...		Lus10005940 [exp]	8.0	0.7960
AT4G28570			Long-chain fatty alcohol dehyd...		Lus10021165 [exp]	12.7	0.7698
AT3G09590			CAP (Cysteine-rich secretory p...		Lus10009068 [exp]	13.0	0.7356
					Lus10015310 [exp]	16.0	0.7513
AT1G65390		ATPP2-A5	phloem protein 2 A5 (.1.2)		Lus10018301 [exp]	16.9	0.7607
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Lus10032074 [exp]	22.4	0.7573
AT5G05340			Peroxidase superfamily protein...		Lus10009933 [exp]	22.8	0.7530
AT3G20410		CPK9	calmodulin-domain protein kina...		Lus10032640 [exp]	24.5	0.7602
					Lus10021453 [exp]	25.1	0.7431

Compare expression of checked genes

Lus10040142 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.