Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17500 218 / 5e-70 AP2_ERF ATERF-1, AtERF1 ethylene responsive element binding factor 1 (.1) AT5G47220 181 / 5e-56 AP2_ERF ATERF-2, ERF2, ATERF2 ETHYLENE RESPONSE FACTOR- 2, ethylene responsive element binding factor 2 (.1) AT2G44840 135 / 2e-38 AP2_ERF ATERF13, EREBP ethylene-responsive element binding factor 13 (.1) AT5G47230 92 / 2e-21 AP2_ERF ATERF5, ATERF-5, ERF5 ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR- 5, ethylene responsive element binding factor 5 (.1) AT4G17490 88 / 4e-20 AP2_ERF ERF-6-6, ATERF6 ethylene responsive element binding factor 6 (.1) AT5G61590 86 / 7e-20 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G51190 84 / 5e-19 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G07580 85 / 7e-19 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT3G23240 81 / 5e-18 AP2_ERF ERF1, ATERF1 ethylene response factor 1 (.1) AT5G61600 80 / 2e-17 AP2_ERF ERF104 ethylene response factor 104 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004368 [exp] 427 / 9e-152 AT4G17500 268 / 7e-90 ethylene responsive element binding factor 1 (.1) Lus10016210 [exp] 93 / 3e-22 AT2G44840 154 / 7e-47 ethylene-responsive element binding factor 13 (.1) Lus10016209 [exp] 93 / 3e-22 AT2G44840 148 / 1e-44 ethylene-responsive element binding factor 13 (.1) Lus10016211 [exp] 92 / 5e-22 AT2G44840 158 / 2e-48 ethylene-responsive element binding factor 13 (.1) Lus10016225 [exp] 91 / 2e-21 AT2G44840 154 / 4e-47 ethylene-responsive element binding factor 13 (.1) Lus10029333 [exp] 89 / 4e-21 AT2G44840 147 / 1e-44 ethylene-responsive element binding factor 13 (.1) Lus10029334 [exp] 89 / 6e-21 AT2G44840 152 / 1e-46 ethylene-responsive element binding factor 13 (.1) Lus10042996 [exp] 89 / 2e-20 AT5G51190 189 / 6e-60 Integrase-type DNA-binding superfamily protein (.1) Lus10032499 [exp] 88 / 4e-20 AT5G51190 186 / 8e-59 Integrase-type DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G154100 [exp] 219 / 4e-70 AT4G17500 221 / 2e-71 ethylene responsive element binding factor 1 (.1) Potri.003G081200 [exp] 213 / 1e-67 AT4G17500 211 / 1e-67 ethylene responsive element binding factor 1 (.1) Potri.003G150700 [exp] 161 / 5e-48 AT4G17500 190 / 9e-60 ethylene responsive element binding factor 1 (.1) Potri.001G079900 [exp] 159 / 3e-47 AT4G17500 186 / 2e-58 ethylene responsive element binding factor 1 (.1) Potri.014G046600 [exp] 135 / 2e-38 AT2G44840 196 / 3e-63 ethylene-responsive element binding factor 13 (.1) Potri.014G046700 [exp] 111 / 4e-29 AT2G44840 168 / 3e-52 ethylene-responsive element binding factor 13 (.1) Potri.014G046900 [exp] 103 / 3e-26 AT2G44840 164 / 2e-50 ethylene-responsive element binding factor 13 (.1) Potri.014G047000 [exp] 97 / 4e-24 AT2G44840 160 / 2e-49 ethylene-responsive element binding factor 13 (.1) Potri.004G051700 [exp] 90 / 1e-21 AT5G47220 111 / 1e-30 ETHYLENE RESPONSE FACTOR- 2, ethylene responsive element binding factor 2 (.1) Potri.011G061700 [exp] 89 / 3e-21 AT3G23240 111 / 1e-30 ethylene response factor 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10040165 pacid=23174045 polypeptide=Lus10040165 locus=Lus10040165.g ID=Lus10040165.BGIv1.0 annot-version=v1.0 ATGCAAGGAGAGATCATAGCAACGGATTCCGATCACGCGCTCCTTGATTCGATTAGTCGACACTTGCTCGGCGAATCAATTAACACCACTACTACTACTA CTTCTACTGCTTGTATGAATCCCGCCGCCGCCGGTCGTCCTGTATTTTCCCGGAACGTGAGCTTCGGTACGATGTACCCATGTCTGACCGACAATTGGGG AGATTTGCCTCTGAAAATGGACGATTCGGAAGACATGCTTCTCTTCGGCGTCCTCCGGGATGCTTTCCATGGCGGGTGGGCCCCCAACCCGGATCAGCAA TCTTTGGATTTCCCTCAGGTGGTGAGTCTTCCGGAGGTGAAATTGGAGCCGGCGGTGGTTAATTCTCTCCCGGTGGAGGTTCAAGTGCCGTCGACGCCGG CGGCGGTGGAGGTGGTGCCGTGGGCGGCGGCGGTGGAGGTGGTGCCGGCGAAGGGGAAGCACTACAGGGGAGTGGGGCAGAGGCCGTGGGGGAAGTTCGC GGCGGAGATCCGAGACCCGGCTAAGAACGGGGCTCGGGTCTGGTTGGGAACCTTCGAGACGGCGGAGGACGCAGCTCTCGCTTACGATCGGGCGGCTTAC CGGATGCGTGGATCCAGGGCACTGTTGAATTTCCCGCTGATGGTTAATTCAGGGAAGCCTGATCCGGTGAGGATTACCACGAAGAGATCGTCGCCGGAGC CGACTGGTTCGTCGACTTCTTCGTCTTCGTCCGGGTCGGATAGCGGGTCGCCCAAGACCAACAAGAGGAGGAAGAAGGCCGGGTCTTCGGGTATCGTTGC TGCTACTGCTAAGCAAGTGGGTGTGGGTTATGTCGACGGGTCGGGTATGGGGAATGCGGTTGGATTGGGATCGTCATACCAAGTGGGAGTGAGTAGTAGT ACACATGGCGGCCGGTTATTGGCTGCCTAG
AA sequence Show only first row Show all	>Lus10040165 pacid=23174045 polypeptide=Lus10040165 locus=Lus10040165.g ID=Lus10040165.BGIv1.0 annot-version=v1.0 MQGEIIATDSDHALLDSISRHLLGESINTTTTTTSTACMNPAAAGRPVFSRNVSFGTMYPCLTDNWGDLPLKMDDSEDMLLFGVLRDAFHGGWAPNPDQQ SLDFPQVVSLPEVKLEPAVVNSLPVEVQVPSTPAAVEVVPWAAAVEVVPAKGKHYRGVGQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAY RMRGSRALLNFPLMVNSGKPDPVRITTKRSSPEPTGSSTSSSSSGSDSGSPKTNKRRKKAGSSGIVAATAKQVGVGYVDGSGMGNAVGLGSSYQVGVSSS THGGRLLAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17500	AP2_ERF	ATERF-1, AtERF1	ethylene responsive element bi...		Lus10040165 [exp]	0	1
AT4G17500	AP2_ERF	ATERF-1, AtERF1	ethylene responsive element bi...		Lus10004368 [exp]	1.4	0.9170
AT4G25030			unknown protein		Lus10041415 [exp]	2.8	0.8812
AT5G42050			DCD (Development and Cell Deat...		Lus10023059 [exp]	4.2	0.8782
AT2G30860		GLUTTR, ATGSTF7...	glutathione S-transferase PHI ...		Lus10020735 [exp]	4.5	0.8565
AT1G11300			protein serine/threonine kinas...		Lus10007600 [exp]	5.2	0.8370
AT2G33580			Protein kinase superfamily pro...		Lus10042226 [exp]	5.3	0.8412
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Lus10015998 [exp]	6.0	0.8455
AT3G17980		AtC2	Arabidopsis thaliana C2 domain...		Lus10033585 [exp]	6.7	0.7824
AT2G41410			Calcium-binding EF-hand family...		Lus10027261 [exp]	6.9	0.8409
AT1G34300			lectin protein kinase family p...		Lus10013252 [exp]	7.4	0.8481

Compare expression of checked genes

Lus10040165 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.