Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07580 122 / 1e-32 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT4G17490 121 / 2e-32 AP2_ERF ERF-6-6, ATERF6 ethylene responsive element binding factor 6 (.1) AT5G47230 120 / 1e-31 AP2_ERF ATERF5, ATERF-5, ERF5 ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR- 5, ethylene responsive element binding factor 5 (.1) AT5G51190 114 / 2e-30 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G61600 114 / 3e-30 AP2_ERF ERF104 ethylene response factor 104 (.1) AT4G17500 105 / 1e-26 AP2_ERF ATERF-1, AtERF1 ethylene responsive element binding factor 1 (.1) AT5G61590 104 / 1e-26 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT2G44840 103 / 4e-26 AP2_ERF ATERF13, EREBP ethylene-responsive element binding factor 13 (.1) AT5G47220 100 / 9e-25 AP2_ERF ATERF-2, ERF2, ATERF2 ETHYLENE RESPONSE FACTOR- 2, ethylene responsive element binding factor 2 (.1) AT3G23230 96 / 5e-24 AP2_ERF ERF98 Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004369 [exp] 400 / 5e-141 AT5G47230 130 / 2e-35 ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR- 5, ethylene responsive element binding factor 5 (.1) Lus10004752 [exp] 118 / 1e-31 AT5G07580 122 / 4e-34 Integrase-type DNA-binding superfamily protein (.1) Lus10032498 [exp] 117 / 1e-31 AT5G07580 144 / 1e-42 Integrase-type DNA-binding superfamily protein (.1) Lus10042995 [exp] 114 / 3e-30 AT5G07580 129 / 1e-36 Integrase-type DNA-binding superfamily protein (.1) Lus10007841 [exp] 112 / 2e-29 AT5G47230 121 / 4e-33 ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR- 5, ethylene responsive element binding factor 5 (.1) Lus10042996 [exp] 111 / 1e-28 AT5G51190 189 / 6e-60 Integrase-type DNA-binding superfamily protein (.1) Lus10032499 [exp] 109 / 4e-28 AT5G51190 186 / 8e-59 Integrase-type DNA-binding superfamily protein (.1) Lus10042907 [exp] 104 / 3e-26 AT2G44840 135 / 5e-39 ethylene-responsive element binding factor 13 (.1) Lus10016225 [exp] 102 / 1e-25 AT2G44840 154 / 4e-47 ethylene-responsive element binding factor 13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G080600 [exp] 126 / 2e-33 AT4G17490 159 / 3e-46 ethylene responsive element binding factor 6 (.1) Potri.001G079600 [exp] 119 / 7e-32 AT5G07580 145 / 1e-42 Integrase-type DNA-binding superfamily protein (.1) Potri.001G154200 [exp] 119 / 4e-31 AT4G17490 159 / 2e-46 ethylene responsive element binding factor 6 (.1) Potri.003G150800 [exp] 118 / 5e-31 AT5G51190 185 / 7e-58 Integrase-type DNA-binding superfamily protein (.1) Potri.001G079800 [exp] 116 / 2e-30 AT5G51190 186 / 2e-58 Integrase-type DNA-binding superfamily protein (.1) Potri.003G151000 [exp] 115 / 2e-30 AT5G07580 164 / 6e-50 Integrase-type DNA-binding superfamily protein (.1) Potri.014G046600 [exp] 106 / 2e-27 AT2G44840 196 / 3e-63 ethylene-responsive element binding factor 13 (.1) Potri.004G051700 [exp] 105 / 2e-27 AT5G47220 111 / 1e-30 ETHYLENE RESPONSE FACTOR- 2, ethylene responsive element binding factor 2 (.1) Potri.014G047000 [exp] 105 / 3e-27 AT2G44840 160 / 2e-49 ethylene-responsive element binding factor 13 (.1) Potri.014G046700 [exp] 105 / 7e-27 AT2G44840 168 / 3e-52 ethylene-responsive element binding factor 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10040167 pacid=23174078 polypeptide=Lus10040167 locus=Lus10040167.g ID=Lus10040167.BGIv1.0 annot-version=v1.0 ATGGCGGACGACGGACTACTCGAATTACAACTCCAGCTCTTCGACGACGACCACCTTTTCTTCTCCGGCTCCGAATCATCATCACCAACAACAAATACCT TCTCCTCCAACGCTGCGTCCACCTGTGGCTCCGCCATTTCGGTCTCCGATTACTCCTTCGACGACTACCATCTCGAATTACTCGATTTCGCTAAGGAATC AAACGATTACGACATCCTGCCACTCGATACCGCCCCCAATTATCCCGTGGTAATCGACCTCACCTCACCAGAATCCCCAATTCCTAACCCTACCTTCATC GACCTCGAATCCAAACCTAAAATTGCGAGCGTACCTCCATTTTCCCTTGATTATTTGGAATTCGAGACCGAACGGAAACTGTCCGAGTCGAATCACGAGC CGACGAAATGGATCCGATTTGGCGGGGATGACGAGGATTACGGGATCCATTTAGTGGGAGTAGAGCGAGAGGAGTCGAGATCTGCAGCCGGAAGCAATAA TAAGGAAGGGAGGCATTACAGAGGAGTGAGGCAGAGGCCGTGGGGGAAGTACGCGGCGGAGATCAGAGATCCGAGCCAGAAAGGCTCGCGAATGTGGCTG GGGACCTACGACTCGCCGATCGATGCCGCAAGAGCGTACGACCGAGCAGCATTCAAGCTGCGGGGTCGCAAGGCGATTCTCAACTTTCCGGCGGATGCTG CCAAGTACAAGTTGCTGGAACCGACGGTGGCGGCGATTCAGGAGGGAGGCAATAGCGTTGACAGTGGTCGGAAGCGTCGAAGAGAAGAGGACGAGGAGGA GGAACGCAAAGTAAAGGCGGCGGCGGATTTTCCGACCGGGGAGAGTATCAGTAGTAGTAGTAGTAGTAGTAGAATGCATATGGAGATTTGGAATGAGATT TCGCGGCGAAGTAGCGATCTTGGGGTTTGGTGTTAA
AA sequence Show only first row Show all	>Lus10040167 pacid=23174078 polypeptide=Lus10040167 locus=Lus10040167.g ID=Lus10040167.BGIv1.0 annot-version=v1.0 MADDGLLELQLQLFDDDHLFFSGSESSSPTTNTFSSNAASTCGSAISVSDYSFDDYHLELLDFAKESNDYDILPLDTAPNYPVVIDLTSPESPIPNPTFI DLESKPKIASVPPFSLDYLEFETERKLSESNHEPTKWIRFGGDDEDYGIHLVGVEREESRSAAGSNNKEGRHYRGVRQRPWGKYAAEIRDPSQKGSRMWL GTYDSPIDAARAYDRAAFKLRGRKAILNFPADAAKYKLLEPTVAAIQEGGNSVDSGRKRRREEDEEEERKVKAAADFPTGESISSSSSSSRMHMEIWNEI SRRSSDLGVWC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07580	AP2_ERF		Integrase-type DNA-binding sup...		Lus10040167 [exp]	0	1
					Lus10016618 [exp]	8.5	0.7087
					Lus10021443 [exp]	19.2	0.6670
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Lus10042192 [exp]	25.5	0.6459
AT5G26620			unknown protein		Lus10031447 [exp]	33.2	0.6188
AT4G38840			SAUR-like auxin-responsive pro...		Lus10008996 [exp]	41.2	0.6296
AT4G38840			SAUR-like auxin-responsive pro...		Lus10010714 [exp]	42.1	0.6327
AT4G38840			SAUR-like auxin-responsive pro...		Lus10010713 [exp]	49.1	0.6193
AT4G38840			SAUR-like auxin-responsive pro...		Lus10009000 [exp]	52.0	0.6190
AT1G66350	GRAS	RGL1	RGA-like 1 (.1)		Lus10037755 [exp]	63.6	0.5232
AT5G19730			Pectin lyase-like superfamily ...		Lus10009997 [exp]	91.2	0.5686

Compare expression of checked genes

Lus10040167 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.