Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47390 282 / 4e-93 MYB myb-like transcription factor family protein (.1) AT3G16350 201 / 3e-61 MYB Homeodomain-like superfamily protein (.1) AT1G70000 169 / 2e-50 MYB myb-like transcription factor family protein (.1.2) AT5G61620 160 / 1e-46 MYB myb-like transcription factor family protein (.1) AT5G56840 141 / 4e-40 MYB myb-like transcription factor family protein (.1) AT1G19000 127 / 3e-34 MYB Homeodomain-like superfamily protein (.1.2) AT1G74840 120 / 4e-32 MYB Homeodomain-like superfamily protein (.1.2) AT2G38090 122 / 5e-32 MYB MYB-R Duplicated homeodomain-like superfamily protein (.1) AT5G58900 121 / 8e-32 MYB Homeodomain-like transcriptional regulator (.1) AT1G49010 121 / 9e-32 MYB Duplicated homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004384 [exp] 459 / 4e-163 AT5G47390 394 / 3e-137 myb-like transcription factor family protein (.1) Lus10037560 [exp] 236 / 1e-74 AT3G16350 303 / 8e-101 Homeodomain-like superfamily protein (.1) Lus10038279 [exp] 225 / 2e-70 AT3G16350 279 / 5e-91 Homeodomain-like superfamily protein (.1) Lus10025822 [exp] 224 / 2e-70 AT3G16350 283 / 2e-92 Homeodomain-like superfamily protein (.1) Lus10013289 [exp] 169 / 5e-50 AT1G70000 235 / 5e-77 myb-like transcription factor family protein (.1.2) Lus10006826 [exp] 167 / 1e-48 AT3G16350 235 / 1e-74 Homeodomain-like superfamily protein (.1) Lus10030813 [exp] 162 / 2e-47 AT1G70000 229 / 7e-75 myb-like transcription factor family protein (.1.2) Lus10010733 [exp] 147 / 8e-42 AT1G70000 182 / 1e-56 myb-like transcription factor family protein (.1.2) Lus10036678 [exp] 145 / 1e-41 AT1G70000 171 / 1e-52 myb-like transcription factor family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G079500 [exp] 363 / 2e-125 AT5G47390 355 / 4e-122 myb-like transcription factor family protein (.1) Potri.001G155300 [exp] 355 / 4e-122 AT5G47390 340 / 7e-116 myb-like transcription factor family protein (.1) Potri.003G049100 [exp] 234 / 4e-74 AT3G16350 311 / 8e-104 Homeodomain-like superfamily protein (.1) Potri.001G189800 [exp] 233 / 9e-74 AT3G16350 307 / 2e-102 Homeodomain-like superfamily protein (.1) Potri.008G191800 [exp] 172 / 5e-51 AT1G70000 241 / 5e-79 myb-like transcription factor family protein (.1.2) Potri.010G039233 [exp] 172 / 6e-51 AT1G70000 230 / 7e-75 myb-like transcription factor family protein (.1.2) Potri.006G230500 [exp] 151 / 8e-44 AT5G56840 167 / 1e-51 myb-like transcription factor family protein (.1) Potri.001G080300 [exp] 148 / 2e-41 AT5G61620 176 / 1e-52 myb-like transcription factor family protein (.1) Potri.006G150300 [exp] 144 / 2e-40 AT5G56840 160 / 5e-48 myb-like transcription factor family protein (.1) Potri.012G060300 [exp] 128 / 2e-34 AT1G49010 217 / 3e-69 Duplicated homeodomain-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10040181 pacid=23174048 polypeptide=Lus10040181 locus=Lus10040181.g ID=Lus10040181.BGIv1.0 annot-version=v1.0 ATGACCAGGCGCTGCTCTCACTGCAGCCACAACGGTCACAATTCCAGGACCTGCCCCAATCGTGGGGTGAAGCTGTTTGGGGTCCGATTGACAGATGGGT CTTCGATCCGGAAAAGTGCAAGCATGGGCAACTTGAGCCATTATACTGGTTCGGGTAATCCGGGCGGCCCGTTGAGCTCTGGGTTGAACGCCCCTGGATC CCCCGGTGGAGATAATCCCGATCACGGCGGAACGGCCGATGGATACGCTTCCGAAGATTTCGTTGCTGGGTCGTCTTCTAGCCGTGAGAGAAAGAAAGGA ACTCCATGGACTGAAGAGGAGCATAGGATGTTTCTGTTAGGCTTGCAGAAGCTAGGGAAAGGTGATTGGCGTGGAATTGCTCGCAATTATGTTATATCAA GGACTCCTACTCAGGTGGCCAGTCATGCTCAGAAGTATTTCGTCAGGCAAAGTAATGTATCAAGGAGGAAAAGACGTTCCAGTCTGTTTGATATCGTTGT AGATGAAGCTGCCGATACTGAGATGACTACTCAAGAATTCCTACCTATCAGCAATACTCAGGCTGAAGCGCAGGAGGAGGAGGATACATTTCCGGCTCCT CCTCTTCCTCCACTCTCATTGGACGAAGAATGTGAATCTATGGAATCAAGCAACTCTAATGATGGAGACAGTGCTCTCCCTCCAAAGGCTGATGGGTCGC AGCCTATTTACCCAGTTATTTACCCTGCATATTACTCGCCATTCTACCCGTTCCCTCTTCCTTACTGGCCAGGATACCCTGCAGCAGCAGAGCCGATTAA GAACGAGGAGACGCACAAGATTCTCAAGCCAACTGCTTTACACTCAAAGAACCCTATCAATGTCGATGAGCTGGTCGGCATGTCAAAATTAAGCCTAGGA GAATCCATAGGCAGTGCAGGGTCGTCTTCACTTTCACAGAAGTTGCTCGAAGGCTCATCGTCGGGGCAGTCTGCATTCCATGCAAATCCAAGTACCCCTA GTAGCTCGAGCATAAACACGAGCAGCAATCCTATCCACGCCTTATGA
AA sequence Show only first row Show all	>Lus10040181 pacid=23174048 polypeptide=Lus10040181 locus=Lus10040181.g ID=Lus10040181.BGIv1.0 annot-version=v1.0 MTRRCSHCSHNGHNSRTCPNRGVKLFGVRLTDGSSIRKSASMGNLSHYTGSGNPGGPLSSGLNAPGSPGGDNPDHGGTADGYASEDFVAGSSSSRERKKG TPWTEEEHRMFLLGLQKLGKGDWRGIARNYVISRTPTQVASHAQKYFVRQSNVSRRKRRSSLFDIVVDEAADTEMTTQEFLPISNTQAEAQEEEDTFPAP PLPPLSLDEECESMESSNSNDGDSALPPKADGSQPIYPVIYPAYYSPFYPFPLPYWPGYPAAAEPIKNEETHKILKPTALHSKNPINVDELVGMSKLSLG ESIGSAGSSSLSQKLLEGSSSGQSAFHANPSTPSSSSINTSSNPIHAL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47390	MYB		myb-like transcription factor ...		Lus10040181 [exp]	0	1
AT1G06450			Polynucleotidyl transferase, r...		Lus10000327 [exp]	3.6	0.9336
AT5G26250			Major facilitator superfamily ...		Lus10041212 [exp]	3.7	0.9138
AT2G41010		ATCAMBP25	calmodulin (CAM)-binding prote...		Lus10029339 [exp]	5.5	0.9297
AT4G29780			unknown protein		Lus10027622 [exp]	5.5	0.9329
AT4G11070	WRKY	ATWRKY41, WRKY4...	WRKY family transcription fact...		Lus10023099 [exp]	8.9	0.9290
AT5G18150			Methyltransferase-related prot...		Lus10034423 [exp]	9.0	0.9220
AT1G64700			unknown protein		Lus10008274 [exp]	9.8	0.9246
					Lus10041357 [exp]	10.3	0.8703
AT3G44900		ATCHX4	cation/H+ exchanger 4, cation/...		Lus10006166 [exp]	10.5	0.8992
AT4G34320			Protein of unknown function (D...		Lus10011295 [exp]	10.5	0.9284

Compare expression of checked genes

Lus10040181 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.