Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38120 767 / 0 MAP1, WAV5, PIR1, AUX1 WAVY ROOTS 5, MODIFIER OF ARF7/NPH4 PHENOTYPES 1, AUXIN RESISTANT 1, Transmembrane amino acid transporter family protein (.1) AT5G01240 759 / 0 LAX1 like AUXIN RESISTANT 1 (.1.2) AT1G77690 724 / 0 LAX3 like AUX1 3 (.1) AT2G21050 717 / 0 LAX2 like AUXIN RESISTANT 2 (.1) AT1G08230 57 / 1e-08 ATGAT1 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) AT5G41800 55 / 8e-08 Transmembrane amino acid transporter family protein (.1) AT5G40780 45 / 0.0001 LHT1, LTH1 lysine histidine transporter 1 (.1.2) AT1G48640 44 / 0.0002 Transmembrane amino acid transporter family protein (.1) AT1G25530 44 / 0.0003 Transmembrane amino acid transporter family protein (.1) AT2G39130 43 / 0.0006 Transmembrane amino acid transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028278 [exp] 967 / 0 AT2G38120 801 / 0.0 WAVY ROOTS 5, MODIFIER OF ARF7/NPH4 PHENOTYPES 1, AUXIN RESISTANT 1, Transmembrane amino acid transporter family protein (.1) Lus10004831 [exp] 776 / 0 AT2G38120 853 / 0.0 WAVY ROOTS 5, MODIFIER OF ARF7/NPH4 PHENOTYPES 1, AUXIN RESISTANT 1, Transmembrane amino acid transporter family protein (.1) Lus10002498 [exp] 767 / 0 AT2G38120 842 / 0.0 WAVY ROOTS 5, MODIFIER OF ARF7/NPH4 PHENOTYPES 1, AUXIN RESISTANT 1, Transmembrane amino acid transporter family protein (.1) Lus10025628 [exp] 732 / 0 AT1G77690 808 / 0.0 like AUX1 3 (.1) Lus10028078 [exp] 731 / 0 AT1G77690 810 / 0.0 like AUX1 3 (.1) Lus10025057 [exp] 721 / 0 AT2G21050 866 / 0.0 like AUXIN RESISTANT 2 (.1) Lus10034488 [exp] 719 / 0 AT2G21050 864 / 0.0 like AUXIN RESISTANT 2 (.1) Lus10003903 [exp] 69 / 4e-12 AT5G41800 695 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10009386 [exp] 57 / 3e-08 AT1G08230 453 / 4e-157 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G191000 [exp] 798 / 0 AT2G38120 734 / 0.0 WAVY ROOTS 5, MODIFIER OF ARF7/NPH4 PHENOTYPES 1, AUXIN RESISTANT 1, Transmembrane amino acid transporter family protein (.1) Potri.008G066400 [exp] 796 / 0 AT2G38120 746 / 0.0 WAVY ROOTS 5, MODIFIER OF ARF7/NPH4 PHENOTYPES 1, AUXIN RESISTANT 1, Transmembrane amino acid transporter family protein (.1) Potri.016G113600 [exp] 769 / 0 AT2G38120 796 / 0.0 WAVY ROOTS 5, MODIFIER OF ARF7/NPH4 PHENOTYPES 1, AUXIN RESISTANT 1, Transmembrane amino acid transporter family protein (.1) Potri.006G098300 [exp] 763 / 0 AT2G38120 795 / 0.0 WAVY ROOTS 5, MODIFIER OF ARF7/NPH4 PHENOTYPES 1, AUXIN RESISTANT 1, Transmembrane amino acid transporter family protein (.1) Potri.002G087000 [exp] 721 / 0 AT1G77690 745 / 0.0 like AUX1 3 (.1) Potri.009G132100 [exp] 720 / 0 AT2G21050 832 / 0.0 like AUXIN RESISTANT 2 (.1) Potri.004G172800 [exp] 717 / 0 AT2G21050 829 / 0.0 like AUXIN RESISTANT 2 (.1) Potri.005G174000 [exp] 712 / 0 AT1G77690 776 / 0.0 like AUX1 3 (.1) Potri.009G149900 [exp] 74 / 4e-14 AT1G08230 573 / 0.0 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Potri.003G138100 [exp] 71 / 6e-13 AT5G41800 729 / 0.0 Transmembrane amino acid transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01490 [flax] [poplar] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Lus10040212 pacid=23173929 polypeptide=Lus10040212 locus=Lus10040212.g ID=Lus10040212.BGIv1.0 annot-version=v1.0 ATGTTGTCACAAAAGCAAGCAGAAGAGGCCATAGTTTCTAGCTTCGACGCCGAGGCGACGGCAGCTCGACCTTCTTCCGCTTCTACAATTGGAGACCACT TGGAAGAGAAAGATCAAGACGATGGAGGAGATTCTCATCAGAATCATAGCCTGAAAAGCTTTTTCTGGCACGGCGGCTCTGTTTATGATGCCTGGTTCAG CTGCGCTTCTAATCAGGTGGCGCAAGTGCTGTTGACTCTGCCGTACTCGTTCTCGCAAATGGGGATGCTGTCAGGGATAATATTGCAGCTCTTCTATGGG TTCATGGGGAGTTGGACTGCTTATCTTATTAGTGTTCTTTATGTTGAGTACAGAACCAGAAAAGAGAAGGAGAATGTCAGCTTCAAGAACCATGTCATCC AGTGGTTTGAAGTGCTGGATGGGTTACTGGGTCCAACTTGGAAAGCTATTGGATTGGCATTCAACTGCACTTTCCTCCTCTTTGGCTCTGTCATTCAGCT TATTGCTTGTGCAAGTAACATATACTACGTTAATGACAAGTTTGACAAAAGGACATGGACGTACATATTTGGAGCTTGCTGTGCAACAACAGTCTTCGTC CCTTCTTTCCACAACTACAGAGTCTGGTCTTTTCTTGGCCTTGGTATGACCACTTACACCGCTTGGTATCTCACCGTTGCTGCTCTAATCCACGGCCAGG ACCCTGGAGTGGTTCACACTGGACCCAAGAAGCTGGTCCTCTACTTCACCGGTGCTACCAACATACTCTACACATTTGGGGGGCATGCTGTTACTGTAGA AATAATGCATGCTATGTGGAAGCCACAAAAGTTCAAGTACATATATCTTCTGGCGACGTTGTATGTGTTCACCTTGACATTGCCATCGGCTGCAGCGATG TACTGGGCGTTTGGAGACCAGCTGCTGACTCATTCCAATGCTTTCGCCCTCCTCCCGAGGACCGCCTGGCGCGATACTGCTGTCATCCTCATGCTCATTC ATCAGTTCATAACATTTGGGTTCGCATGCACGCCGCTGTACTTCGTGTGGGAGAAAGTGGTGAGGATGCACGACACCAAGAGCATATTAAAGAGGGCAGT TACGAGATTGCCAGTGGTGGTACCCATTTGGTTCTTAGCCATAATTTTCCCATTCTTTGGTCCCATCAACTCGGCCGTGGGTGCTCTGCTTGTCAGCTTC ACTGTCTACATCATCCCTGCTCTCGCTCATATGCTCACTTACCGATCCCCCTCCGCTCGCCAGAATGCGGCCGAGAAGCCTCCGAGGTTCATGAAGAGCT GGACAGCAATGTACATGGTGAATGCATTCGTGGTCGGGTGGGTGTTTGTGGTCGGGTTCGGGTTGGGTGGATGGGCTAGTGTGACCAATTTCATAAGGCA AGTTAATACCTTTGGACTGTTTGCTAAGTGCTACCAGTGCCCGAAACCGGGAAAGATTTAG
AA sequence Show only first row Show all	>Lus10040212 pacid=23173929 polypeptide=Lus10040212 locus=Lus10040212.g ID=Lus10040212.BGIv1.0 annot-version=v1.0 MLSQKQAEEAIVSSFDAEATAARPSSASTIGDHLEEKDQDDGGDSHQNHSLKSFFWHGGSVYDAWFSCASNQVAQVLLTLPYSFSQMGMLSGIILQLFYG FMGSWTAYLISVLYVEYRTRKEKENVSFKNHVIQWFEVLDGLLGPTWKAIGLAFNCTFLLFGSVIQLIACASNIYYVNDKFDKRTWTYIFGACCATTVFV PSFHNYRVWSFLGLGMTTYTAWYLTVAALIHGQDPGVVHTGPKKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLLATLYVFTLTLPSAAAM YWAFGDQLLTHSNAFALLPRTAWRDTAVILMLIHQFITFGFACTPLYFVWEKVVRMHDTKSILKRAVTRLPVVVPIWFLAIIFPFFGPINSAVGALLVSF TVYIIPALAHMLTYRSPSARQNAAEKPPRFMKSWTAMYMVNAFVVGWVFVVGFGLGGWASVTNFIRQVNTFGLFAKCYQCPKPGKI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38120		MAP1, WAV5, PIR...	WAVY ROOTS 5, MODIFIER OF ARF7...		Lus10040212 [exp]	0	1
AT4G14740			Plant protein of unknown funct...		Lus10041187 [exp]	3.7	0.9453
AT3G59690		IQD13	IQ-domain 13 (.1)		Lus10027059 [exp]	4.0	0.9563
AT3G04350			Plant protein of unknown funct...		Lus10027952 [exp]	6.0	0.9297
AT3G55420			unknown protein		Lus10005165 [exp]	7.2	0.9209
AT3G15480			Protein of unknown function (D...		Lus10043091 [exp]	7.3	0.9436
AT2G38120		MAP1, WAV5, PIR...	WAVY ROOTS 5, MODIFIER OF ARF7...		Lus10028278 [exp]	7.7	0.9459
AT3G09770		LOG2	LOSS OF GDU 2, RING/U-box supe...		Lus10015080 [exp]	7.9	0.9052
AT1G08290	C2H2ZnF	WIP3	WIP domain protein 3 (.1)		Lus10004887 [exp]	8.1	0.9485
AT1G70420			Protein of unknown function (D...		Lus10042116 [exp]	8.2	0.9300
AT3G59310			Eukaryotic protein of unknown ...		Lus10026744 [exp]	8.7	0.9473

Compare expression of checked genes

Lus10040212 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.