Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11280 142 / 8e-43 MYB Duplicated homeodomain-like superfamily protein (.1.2) AT5G05790 139 / 4e-41 MYB Duplicated homeodomain-like superfamily protein (.1) AT5G58900 132 / 1e-38 MYB Homeodomain-like transcriptional regulator (.1) AT2G38090 130 / 1e-37 MYB MYB-R Duplicated homeodomain-like superfamily protein (.1) AT5G01200 124 / 1e-35 MYB Duplicated homeodomain-like superfamily protein (.1) AT5G08520 120 / 1e-33 MYB Duplicated homeodomain-like superfamily protein (.1) AT1G49010 117 / 2e-32 MYB Duplicated homeodomain-like superfamily protein (.1) AT5G04760 114 / 5e-32 MYB Duplicated homeodomain-like superfamily protein (.1) AT4G09450 103 / 5e-28 MYB ATMYB6 Duplicated homeodomain-like superfamily protein (.1) AT5G47390 105 / 1e-27 MYB myb-like transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028264 [exp] 251 / 4e-85 AT3G11280 221 / 1e-71 Duplicated homeodomain-like superfamily protein (.1.2) Lus10014837 [exp] 162 / 4e-50 AT3G11280 242 / 7e-80 Duplicated homeodomain-like superfamily protein (.1.2) Lus10009884 [exp] 160 / 4e-49 AT3G11280 246 / 4e-81 Duplicated homeodomain-like superfamily protein (.1.2) Lus10018209 [exp] 135 / 1e-39 AT5G58900 302 / 9e-103 Homeodomain-like transcriptional regulator (.1) Lus10040696 [exp] 135 / 1e-39 AT5G58900 306 / 2e-104 Homeodomain-like transcriptional regulator (.1) Lus10027781 [exp] 130 / 8e-38 AT2G38090 208 / 2e-66 Duplicated homeodomain-like superfamily protein (.1) Lus10035518 [exp] 130 / 2e-37 AT2G38090 304 / 1e-103 Duplicated homeodomain-like superfamily protein (.1) Lus10013447 [exp] 122 / 2e-34 AT5G08520 350 / 2e-121 Duplicated homeodomain-like superfamily protein (.1) Lus10041001 [exp] 122 / 2e-34 AT5G08520 354 / 4e-123 Duplicated homeodomain-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G193000 [exp] 155 / 2e-47 AT2G38090 258 / 2e-85 Duplicated homeodomain-like superfamily protein (.1) Potri.008G064200 [exp] 155 / 2e-47 AT5G05790 267 / 3e-89 Duplicated homeodomain-like superfamily protein (.1) Potri.009G042600 [exp] 137 / 4e-40 AT5G58900 307 / 1e-104 Homeodomain-like transcriptional regulator (.1) Potri.001G248800 [exp] 135 / 1e-39 AT5G58900 312 / 1e-106 Homeodomain-like transcriptional regulator (.1) Potri.006G097300 [exp] 135 / 2e-39 AT2G38090 355 / 2e-123 Duplicated homeodomain-like superfamily protein (.1) Potri.016G112300 [exp] 133 / 1e-38 AT2G38090 358 / 9e-125 Duplicated homeodomain-like superfamily protein (.1) Potri.012G060300 [exp] 119 / 1e-33 AT1G49010 217 / 3e-69 Duplicated homeodomain-like superfamily protein (.1) Potri.007G076200 [exp] 119 / 3e-33 AT5G08520 293 / 6e-99 Duplicated homeodomain-like superfamily protein (.1) Potri.005G087700 [exp] 118 / 4e-33 AT5G08520 304 / 2e-103 Duplicated homeodomain-like superfamily protein (.1) Potri.010G240800 [exp] 115 / 3e-32 AT5G04760 232 / 3e-77 Duplicated homeodomain-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10040225 pacid=23174120 polypeptide=Lus10040225 locus=Lus10040225.g ID=Lus10040225.BGIv1.0 annot-version=v1.0 ATGATGGTGGGTTCCAGTAAAAGTTCCGATCAGGGGAGGAAGAAGGGCGTTCCTTGGACTGAGGATGAACACAGGCGATTCTTGAAGGGGCTGGTGAAGT ATGGAAAAGGGGATTGGAGGAACATTTCTCGAAACGCAGTCGTAACAAAGACACCAACACAAGTTGCAAGCCACGCCCAAAAATACTTCATCAGGCAGCA GCAGCTCTCCGGCGTTAAGGACAAGAGGAGGCCTAGCATCCACGACATCACCACCCTCAATCTCGCCGGCAACAACACTTTCTCGGTCGCCGGCAAGAGA TCATCATCATCATCAACAACTCCGATCAATTGGAACCATCACCACCAACAACAATATCATCCGAGTTCTTCCACCAGCTTCTTCATGGGTTTATCTCCAT ACAATCCTAATGCGCCGTCCAATCCTGACGTTTCGGATGTGTTTCGGATGCCTGTCGGTCGAGGAATCCGTAGCTGA
AA sequence Show only first row Show all	>Lus10040225 pacid=23174120 polypeptide=Lus10040225 locus=Lus10040225.g ID=Lus10040225.BGIv1.0 annot-version=v1.0 MMVGSSKSSDQGRKKGVPWTEDEHRRFLKGLVKYGKGDWRNISRNAVVTKTPTQVASHAQKYFIRQQQLSGVKDKRRPSIHDITTLNLAGNNTFSVAGKR SSSSSTTPINWNHHHQQQYHPSSSTSFFMGLSPYNPNAPSNPDVSDVFRMPVGRGIRS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11280	MYB		Duplicated homeodomain-like su...		Lus10040225 [exp]	0	1
AT1G67856			RING/U-box superfamily protein...		Lus10011416 [exp]	2.2	0.8438
AT1G29530			unknown protein		Lus10025373 [exp]	3.0	0.8551
AT5G07840		PIA1	phytochrome interacting ankyri...		Lus10033816 [exp]	4.4	0.8626
AT3G11280	MYB		Duplicated homeodomain-like su...		Lus10028264 [exp]	4.9	0.8502
AT3G14460			LRR and NB-ARC domains-contain...		Lus10006793 [exp]	6.7	0.8273
AT3G57340			Heat shock protein DnaJ, N-ter...		Lus10043277 [exp]	8.1	0.8553
AT1G26920			unknown protein		Lus10030488 [exp]	9.6	0.8017
AT2G18050		HIS1-3	histone H1-3 (.1.2)		Lus10025968 [exp]	10.6	0.8186
AT3G11690			unknown protein		Lus10013608 [exp]	11.0	0.8050
AT3G58800			unknown protein		Lus10007354 [exp]	11.7	0.8275

Compare expression of checked genes

Lus10040225 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.