Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38080 262 / 3e-83 ATLMCO4, IRX12, LAC4 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) AT5G58910 229 / 5e-71 LAC16 laccase 16 (.1) AT5G03260 227 / 7e-70 LAC11 laccase 11 (.1) AT5G01190 223 / 2e-68 LAC10 laccase 10 (.1) AT5G05390 187 / 2e-54 LAC12 laccase 12 (.1) AT2G29130 177 / 7e-51 LAC2, ATLAC2 laccase 2 (.1) AT2G30210 175 / 3e-50 LAC3 laccase 3 (.1) AT2G40370 173 / 2e-49 LAC5 laccase 5 (.1) AT5G60020 172 / 7e-49 LAC17, ATLAC17 laccase 17 (.1) AT5G07130 163 / 1e-45 LAC13 laccase 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028263 [exp] 435 / 1e-150 AT2G38080 775 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Lus10040697 [exp] 275 / 2e-88 AT2G38080 828 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Lus10018208 [exp] 271 / 1e-86 AT2G38080 837 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Lus10034289 [exp] 266 / 2e-85 AT2G38080 795 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Lus10017175 [exp] 265 / 1e-84 AT2G38080 875 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Lus10041481 [exp] 261 / 2e-83 AT2G38080 807 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Lus10027782 [exp] 253 / 5e-80 AT2G38080 887 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Lus10032894 [exp] 252 / 2e-79 AT2G38080 894 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Lus10035517 [exp] 249 / 2e-78 AT2G38080 907 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G193100 [exp] 332 / 1e-110 AT2G38080 771 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Potri.008G064000 [exp] 327 / 1e-108 AT2G38080 728 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Potri.001G248700 [exp] 272 / 4e-87 AT2G38080 874 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Potri.016G112000 [exp] 269 / 5e-86 AT2G38080 911 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Potri.009G042500 [exp] 266 / 7e-85 AT2G38080 891 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Potri.006G097100 [exp] 260 / 1e-82 AT2G38080 896 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Potri.006G097000 [exp] 260 / 2e-82 AT2G38080 914 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Potri.016G112100 [exp] 257 / 2e-81 AT2G38080 891 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Potri.006G096900 [exp] 255 / 1e-80 AT2G38080 899 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Potri.004G156400 [exp] 248 / 1e-77 AT5G03260 877 / 0.0 laccase 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF00394 [flax] [poplar] Cu-oxidase Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Lus10040226 pacid=23173995 polypeptide=Lus10040226 locus=Lus10040226.g ID=Lus10040226.BGIv1.0 annot-version=v1.0 ATGGAGAGTCCGAGTAGCAATCGGTCGATATTAATCGCACTCGTCCTCCTTTGGCCAGCACTTGTCGATTGTGCTACTCGAAAGTACACATTCAACGCAA GTTATTTCGAAACAATAGGTACCGTATATGTAATTTACCCCGGAGATTTTACGCGCACAGGGTACAGTCTCCACGTGGAAAGCGGCAAAAAATCCCTCCT CGGTATAGTCAACGCAGCGCTCAACGACGAGCTCTTCCTCAAAATTGCCGGCCACAAATTCACCGTCGTCGAAGCCGACGCTACCTACACGAAACCCTTC ACCACCGACACAATCTTCCTTGGCCCGGGCCAAACCACAAACGCCCTACTCACCGCCGACCAAACTGCCGGAAAGTACATAATCGCCGTCTCCCCCTTCA TGGACACGGTCGTCGCCGTCGACAACGTGACCGCCGTCGGCTTCCTCCGCTACAAAGGCATCCCTCCCTTCTCTCCGCCGCAGCTCACCGCCACCCCGGC GATAAACTCCACCGCCGTGACCTCTTCATTTGCCGCCGGCCTCAGGAGCCTCAATTCGAAGGAATTCCCCGCCGCCGTCCCGCAGACGGTGGACCACTCA CTGTTCTTCGCAATCGGAGTCGGAATCAACGCCTGCCCAAGTTGTTTCAACGGAATCAGGGCGGTGGCGGACATCAACAACGTCTCTTTCGTACCCCCGG CTGTGGCTCTGCTCCAGGCTCATTACTTCGGCATGCAGGTGGTGTTCACTGACGATTTACCGGCGAATCCGCTGTCGCAGTTCAATTACACCGGGGTTTC GACCCCCGGGAGTCTGCAGACAGAGAATGGGGTTAGAGTATATGGGCTAGCGTTTAACAGCACGGTGCAGGTTGTGCTTCAGGGGACGTCGGTGTTTAGC CCCGGAGAGCCATCCGGTTCATCTTCATGGATTCAATTTCTTCGTGGTCGGGACAGGGTTGGGGAATTTTGA
AA sequence Show only first row Show all	>Lus10040226 pacid=23173995 polypeptide=Lus10040226 locus=Lus10040226.g ID=Lus10040226.BGIv1.0 annot-version=v1.0 MESPSSNRSILIALVLLWPALVDCATRKYTFNASYFETIGTVYVIYPGDFTRTGYSLHVESGKKSLLGIVNAALNDELFLKIAGHKFTVVEADATYTKPF TTDTIFLGPGQTTNALLTADQTAGKYIIAVSPFMDTVVAVDNVTAVGFLRYKGIPPFSPPQLTATPAINSTAVTSSFAAGLRSLNSKEFPAAVPQTVDHS LFFAIGVGINACPSCFNGIRAVADINNVSFVPPAVALLQAHYFGMQVVFTDDLPANPLSQFNYTGVSTPGSLQTENGVRVYGLAFNSTVQVVLQGTSVFS PGEPSGSSSWIQFLRGRDRVGEF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10040226 [exp]	0	1
AT2G40190		LEW3	LEAF WILTING 3, UDP-Glycosyltr...		Lus10021233 [exp]	1.0	0.9757
					Lus10034979 [exp]	2.4	0.9556
AT5G59340	HD	WOX2	WUSCHEL related homeobox 2 (.1...		Lus10040840 [exp]	2.6	0.9353
AT5G65165		SDH2-3	succinate dehydrogenase 2-3 (....		Lus10028289 [exp]	2.8	0.9532
					Lus10022721 [exp]	3.0	0.9547
AT2G21910		CYP96A5	"cytochrome P450, family 96, s...		Lus10018158 [exp]	3.0	0.9082
AT4G23310		CRK23	cysteine-rich RLK (RECEPTOR-li...		Lus10023335 [exp]	3.9	0.9479
AT1G23420	YABBY	INO, YAB4	INNER NO OUTER, Plant-specific...		Lus10030596 [exp]	6.5	0.9426
					Lus10027773 [exp]	7.2	0.8622
AT1G17180		ATGSTU25	glutathione S-transferase TAU ...		Lus10030020 [exp]	7.5	0.9230

Compare expression of checked genes

Lus10040226 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.