Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11320 486 / 1e-174 Nucleotide-sugar transporter family protein (.1) AT5G05820 477 / 3e-171 Nucleotide-sugar transporter family protein (.1) AT5G04160 404 / 1e-142 Nucleotide-sugar transporter family protein (.1) AT3G10290 403 / 3e-141 Nucleotide-sugar transporter family protein (.1) AT1G12500 356 / 9e-123 Nucleotide-sugar transporter family protein (.1) AT1G21870 147 / 1e-41 GONST5 golgi nucleotide sugar transporter 5 (.1) AT1G77610 147 / 1e-41 EamA-like transporter family protein (.1) AT5G11230 105 / 7e-26 Nucleotide-sugar transporter family protein (.1) AT5G25400 105 / 9e-26 Nucleotide-sugar transporter family protein (.1) AT4G32390 98 / 4e-23 Nucleotide-sugar transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028255 [exp] 564 / 0 AT3G11320 523 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10009878 [exp] 492 / 7e-177 AT3G11320 548 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10014832 [exp] 474 / 2e-169 AT3G11320 530 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10016446 [exp] 447 / 2e-159 AT5G05820 508 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10042039 [exp] 390 / 2e-136 AT3G10290 526 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10018043 [exp] 389 / 3e-136 AT3G10290 528 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10006684 [exp] 298 / 2e-101 AT1G12500 439 / 2e-156 Nucleotide-sugar transporter family protein (.1) Lus10007029 [exp] 282 / 5e-94 AT1G12500 457 / 2e-162 Nucleotide-sugar transporter family protein (.1) Lus10025645 [exp] 152 / 1e-43 AT1G21870 563 / 0.0 golgi nucleotide sugar transporter 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G194100 [exp] 488 / 2e-175 AT3G11320 572 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.008G063400 [exp] 486 / 7e-175 AT3G11320 566 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.001G247600 [exp] 449 / 3e-160 AT3G11320 476 / 4e-171 Nucleotide-sugar transporter family protein (.1) Potri.009G040800 [exp] 436 / 3e-155 AT5G05820 472 / 2e-169 Nucleotide-sugar transporter family protein (.1) Potri.016G043200 [exp] 416 / 5e-147 AT5G04160 512 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.006G046600 [exp] 388 / 5e-136 AT5G04160 503 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.003G118000 [exp] 378 / 3e-131 AT1G12500 503 / 4e-180 Nucleotide-sugar transporter family protein (.1) Potri.001G114100 [exp] 367 / 3e-127 AT1G12500 483 / 8e-172 Nucleotide-sugar transporter family protein (.1) Potri.002G084500 [exp] 149 / 2e-42 AT1G77610 580 / 0.0 EamA-like transporter family protein (.1) Potri.005G177200 [exp] 148 / 8e-42 AT1G77610 561 / 0.0 EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF03151 [flax] [poplar] TPT Triose-phosphate Transporter family
Representative CDS sequence Show only first row Show all	>Lus10040234 pacid=23173843 polypeptide=Lus10040234 locus=Lus10040234.g ID=Lus10040234.BGIv1.0 annot-version=v1.0 ATGGAGAAGTCAATTAAGGAGAACCTACCATCGTCGTCCTCTTCGTTCCTCTTCACCGTCGGCCTAATCGCCTCATGGTACACCTCAAACATCGGAGTCC TCCTCCTCAACAAGTTCCTCCTCAGCTTCTTCGGATTCAAGTTCCCAATCTTCCTCACCATGTGCCACATGACCTCCTGCAGCCTCTTCAGCTACGTAGC CATTGTTTGGGTGAAAATGGTCCCCCTCCAGACCATCCGATCCCGCTCCCAGTTCCTCAAGATCTCCTGTTTGAGCCTCGTCTTCTGCGTGTCGGTGGTA TTTGGCAACATCTCCCTCCGATTCCTCCCCGTTTCATTTACTCAGGCCGTCGGTGCTACTACACCTTTCTTCACTGCGGTGTTCGCTTATCTCATGACCT TCAAGAGAGAGGCCTGGCTCACTTACCTCACTCTGGTTCCTGTGGTTACTGGAGTCATCATTGCCAGTGGGGGTGAACCAAGCTTCGATCTGTTTGGATT TCTAATGTGTGTAGCTGCTACAGCTGCAAGAGCTCTCAAGTCAGTAATGCAGGGAATATTGCTTTCTTCCGAGGGGGAGAAGCTGAATTCCATGAACCTG CTAATGTACATGGCTCCAGTTGCTGTTGTGTTCTTGCTACCTGCTAGCCTGATGATGGAAGGGAATGTGGTTGGCATTACTGTGTCTCTAGCGAGAGATG ACAGCAAGATCGTCTGGTTGCTGTTCTTCAGCTCAGTTTTAGCATTTTTTGTGAATTGGACCAACTTTTTGGTCACTAAACATACAAGTGCCCTCACACT CCAGGTTTTGGGAAATGCAAAGGGTGCCGTAGCGGTTGTGATCTCGATTCTCATCTTCAGAAACCCAGTATCCGTAACAGGAATGCTTGGTTACGGTCTA ACAGTCTTTGGAGTCATTCTGTACAGTGAAGCCAAGAAACGAAGCAAGTGA
AA sequence Show only first row Show all	>Lus10040234 pacid=23173843 polypeptide=Lus10040234 locus=Lus10040234.g ID=Lus10040234.BGIv1.0 annot-version=v1.0 MEKSIKENLPSSSSSFLFTVGLIASWYTSNIGVLLLNKFLLSFFGFKFPIFLTMCHMTSCSLFSYVAIVWVKMVPLQTIRSRSQFLKISCLSLVFCVSVV FGNISLRFLPVSFTQAVGATTPFFTAVFAYLMTFKREAWLTYLTLVPVVTGVIIASGGEPSFDLFGFLMCVAATAARALKSVMQGILLSSEGEKLNSMNL LMYMAPVAVVFLLPASLMMEGNVVGITVSLARDDSKIVWLLFFSSVLAFFVNWTNFLVTKHTSALTLQVLGNAKGAVAVVISILIFRNPVSVTGMLGYGL TVFGVILYSEAKKRSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11320			Nucleotide-sugar transporter f...		Lus10040234 [exp]	0	1
AT4G10390			Protein kinase superfamily pro...		Lus10013656 [exp]	8.1	0.8535
AT5G36290			Uncharacterized protein family...		Lus10020195 [exp]	17.1	0.7683
AT4G09810			Nucleotide-sugar transporter f...		Lus10033531 [exp]	18.7	0.7722
AT2G12400			unknown protein		Lus10008028 [exp]	20.2	0.8515
AT5G11890		EMB3135	EMBRYO DEFECTIVE 3135, unknown...		Lus10026428 [exp]	21.5	0.8291
AT1G59710			Protein of unknown function (D...		Lus10036694 [exp]	27.9	0.8279
AT2G25270			unknown protein		Lus10038102 [exp]	31.0	0.8275
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Lus10022728 [exp]	32.4	0.8049
AT2G19580		TET2	tetraspanin2 (.1)		Lus10008563 [exp]	32.4	0.8467
AT1G70090		GATL9, LGT8	GALACTURONOSYLTRANSFERASE-LIKE...		Lus10029215 [exp]	35.2	0.7833

Compare expression of checked genes

Lus10040234 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.