Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55740 629 / 0 ATPROT2, ProT2 proline transporter 2 (.1.2) AT2G39890 621 / 0 ATPROT1, ProT1 proline transporter 1 (.1.2) AT2G36590 596 / 0 ATPROT3, ProT3 proline transporter 3 (.1) AT1G08230 141 / 5e-37 ATGAT1 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) AT5G41800 132 / 8e-34 Transmembrane amino acid transporter family protein (.1) AT5G40780 99 / 3e-22 LHT1, LTH1 lysine histidine transporter 1 (.1.2) AT1G48640 91 / 2e-19 Transmembrane amino acid transporter family protein (.1) AT5G09220 89 / 1e-18 AAP2 amino acid permease 2 (.1) AT1G77380 88 / 1e-18 AAP3, ATAAP3 amino acid permease 3 (.1) AT5G63850 87 / 3e-18 AAP4 amino acid permease 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028251 [exp] 748 / 0 AT3G55740 676 / 0.0 proline transporter 2 (.1.2) Lus10009877 [exp] 687 / 0 AT2G39890 700 / 0.0 proline transporter 1 (.1.2) Lus10038639 [exp] 148 / 2e-39 AT1G08230 523 / 0.0 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Lus10003903 [exp] 138 / 7e-36 AT5G41800 695 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10009386 [exp] 120 / 2e-29 AT1G08230 453 / 4e-157 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Lus10008263 [exp] 98 / 1e-21 AT1G71680 572 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10029703 [exp] 91 / 3e-19 AT1G44100 688 / 0.0 amino acid permease 5 (.1) Lus10014605 [exp] 90 / 3e-19 AT5G40780 744 / 0.0 lysine histidine transporter 1 (.1.2) Lus10022329 [exp] 90 / 4e-19 AT5G40780 798 / 0.0 lysine histidine transporter 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G194600 [exp] 681 / 0 AT2G39890 702 / 0.0 proline transporter 1 (.1.2) Potri.008G062900 [exp] 670 / 0 AT2G39890 687 / 0.0 proline transporter 1 (.1.2) Potri.005G219300 [exp] 157 / 6e-43 AT1G08230 226 / 7e-69 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Potri.008G026700 [exp] 156 / 2e-42 AT1G08230 490 / 7e-172 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Potri.008G026600 [exp] 154 / 2e-41 AT1G08230 509 / 2e-179 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Potri.009G149900 [exp] 147 / 7e-39 AT1G08230 573 / 0.0 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Potri.003G138100 [exp] 144 / 5e-38 AT5G41800 729 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.001G093600 [exp] 144 / 7e-38 AT5G41800 729 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.015G091600 [exp] 103 / 1e-23 AT5G40780 610 / 0.0 lysine histidine transporter 1 (.1.2) Potri.008G179000 [exp] 100 / 2e-22 AT1G24400 654 / 0.0 ARABIDOPSIS LYSINE HISTIDINE TRANSPORTER 2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, lysine histidine transporter 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01490 [flax] [poplar] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Lus10040238 pacid=23174167 polypeptide=Lus10040238 locus=Lus10040238.g ID=Lus10040238.BGIv1.0 annot-version=v1.0 ATGGAGGTCGACGGCGGCGGTGGCGGAGGGGAGTTTGCCGGGCCGAGGAAAGTTCACAACATGGAGAAGTTGGCCGTGGAGGGCGTTGAGACCGCTCATC AGATCAGTAGTGGTCGGAATTCCGTCTGGGATGGGATTAACAAAGACACCCTGCCTGTCTTGATTCTTAGAGCAAACTTTTGTAGAGTTGACCTTATACT GAGAAATTCATGGTTCCAAGTGGGATTCATTCTTACAACTGGAATCAACAGTGCGTATGTATTAGGTTACTCAGGGACCATTATGGTCCCTCTGGGTTGG TTTCCTGGTGTAATCGGTTTGGTTCTGGCCACTGCCATTTCACTGTACGCAAACTCTCTGGTAGCCAAGTTACATGAGTTTGGAGGCAGAAGACATATCA GATACAGAGATTTGGCTGGATTCATCTATGGCAAGAGAGCTTACTCGGTTACATGGGGTTTACAGTATGTGAATCTTTTCATGATCAACACTGGTTACAT CATCCTAGCTGGTCAAGCCCTTAAGGCTGCATATGTGCTATTCAATGATGATGGTCAAATGAAGCTTCCATACTTCATAGCCATTGCTGGCGTTGTATGC GTCCTTTTCGCCATTGCAACTCCTCATTTGTCAGCTCTGAGAGTTTGGCTCGGAGTTTCGACAGTTCTAAGCTTGATATATATCGTTGTCGCCATTGTGC TCTCCATTAAAGACGGAGTCAATGGACCGGTTAGGGATTACAAAATCCCGGGAACAACGACAAGCAAGATTTTTACAACGATCGGAGCATCTGCAAATCT TGTGTTTGCATTCAATACAGGAATGCTTCCAGAGATACAGGCAACCATAAAGCAGCCGGTAGTCAAGAACATGATGAAAGCACTCTACTTCCAGTTTTCG GCCGGAGTTCTACCAATGTATGCTGTTACTTTCATCGGTTATTGGGCGTATGGATCATCGACATCTACGTACTTGCTTAGCAGTGTGAACGGTCCGGTTT GGGTGAAGGCAATGGCTAACATTGCTGCATTCTTTCAGTCTGTCATAGCATTACATATATTCGCCAGTCCAATGTACGAGTACTTGGACACAAAGTACGG GATCACAGGGAGCCGGTTCGCGTTCCACAACTTGACATTCAGGATAGGAGTAAGAGGTGGATACCTTTTCATCAACACATTGGTTTCGGCAGTTCTGCCA TTCTTGGGAGATTTCATGAGCTTGACTGGGGCCATAAGCACGTTCCCCTTAACGTTCATTCTCGCGAACCATATGTACCTAATGGCTATGGGGAACAATT TGAGCTCTTTGAAAAGGGCCTGGCACTGGCTTAACGTGTGGTTCTTCGCGTTCATGTCGCTAGCAGCACTCATTGCTGCTCTTCGGCTCATTGCTGTCGA TTCGAAAACTTATCACGTCTTTGCTGACTTATGA
AA sequence Show only first row Show all	>Lus10040238 pacid=23174167 polypeptide=Lus10040238 locus=Lus10040238.g ID=Lus10040238.BGIv1.0 annot-version=v1.0 MEVDGGGGGGEFAGPRKVHNMEKLAVEGVETAHQISSGRNSVWDGINKDTLPVLILRANFCRVDLILRNSWFQVGFILTTGINSAYVLGYSGTIMVPLGW FPGVIGLVLATAISLYANSLVAKLHEFGGRRHIRYRDLAGFIYGKRAYSVTWGLQYVNLFMINTGYIILAGQALKAAYVLFNDDGQMKLPYFIAIAGVVC VLFAIATPHLSALRVWLGVSTVLSLIYIVVAIVLSIKDGVNGPVRDYKIPGTTTSKIFTTIGASANLVFAFNTGMLPEIQATIKQPVVKNMMKALYFQFS AGVLPMYAVTFIGYWAYGSSTSTYLLSSVNGPVWVKAMANIAAFFQSVIALHIFASPMYEYLDTKYGITGSRFAFHNLTFRIGVRGGYLFINTLVSAVLP FLGDFMSLTGAISTFPLTFILANHMYLMAMGNNLSSLKRAWHWLNVWFFAFMSLAALIAALRLIAVDSKTYHVFADL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55740		ATPROT2, ProT2	proline transporter 2 (.1.2)		Lus10040238 [exp]	0	1
					Lus10041944 [exp]	1.0	0.9510
AT5G05365			Heavy metal transport/detoxifi...		Lus10009848 [exp]	7.5	0.8905
AT1G35470			SPla/RYanodine receptor (SPRY)...		Lus10009445 [exp]	7.9	0.9188
AT1G10630		ATARFA1F	ADP-ribosylation factor A1F (....		Lus10027870 [exp]	8.3	0.8659
AT5G18970			AWPM-19-like family protein (....		Lus10021949 [exp]	11.0	0.9110
AT3G14630		CYP72A9	"cytochrome P450, family 72, s...		Lus10002311 [exp]	11.2	0.8638
AT5G19875			unknown protein		Lus10034527 [exp]	11.2	0.8872
AT5G05365			Heavy metal transport/detoxifi...		Lus10040965 [exp]	13.2	0.9026
AT2G36650			unknown protein		Lus10023883 [exp]	13.3	0.9031
AT5G01370		ACI1	ALC-interacting protein 1 (.1)		Lus10002480 [exp]	13.7	0.7795

Compare expression of checked genes

Lus10040238 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.