Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55730 285 / 5e-93 MYB ATMYB109 myb domain protein 109 (.1) AT2G39880 248 / 4e-79 MYB ATMYB25 myb domain protein 25 (.1) AT3G09230 241 / 6e-76 MYB ATMYB1 myb domain protein 1 (.1) AT4G37260 158 / 5e-45 MYB ATMYB73 myb domain protein 73 (.1) AT2G23290 155 / 6e-44 MYB ATMYB70 myb domain protein 70 (.1) AT5G67300 154 / 1e-43 MYB ATMYB44, AtMYBr1 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 44, myb domain protein r1 (.1) AT3G50060 151 / 1e-42 MYB ATMYB77 myb domain protein 77 (.1) AT1G17950 142 / 9e-40 MYB AtMYB52, BW52, MYB52 myb domain protein 52 (.1) AT4G33450 136 / 1e-37 MYB ATMYB69 myb domain protein 69 (.1) AT5G17800 137 / 3e-37 MYB ATMYB56 myb domain protein 56 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028250 [exp] 603 / 0 AT3G55730 306 / 2e-101 myb domain protein 109 (.1) Lus10040940 [exp] 162 / 2e-47 AT4G37260 176 / 2e-54 myb domain protein 73 (.1) Lus10007503 [exp] 161 / 7e-47 AT4G37260 182 / 2e-56 myb domain protein 73 (.1) Lus10014103 [exp] 159 / 3e-46 AT4G37260 213 / 2e-68 myb domain protein 73 (.1) Lus10010238 [exp] 159 / 2e-45 AT4G37260 271 / 4e-90 myb domain protein 73 (.1) Lus10010055 [exp] 158 / 4e-45 AT4G37260 259 / 2e-85 myb domain protein 73 (.1) Lus10028979 [exp] 156 / 5e-45 AT4G37260 181 / 1e-55 myb domain protein 73 (.1) Lus10032764 [exp] 154 / 6e-44 AT4G37260 182 / 5e-56 myb domain protein 73 (.1) Lus10010260 [exp] 156 / 8e-44 AT5G67300 288 / 5e-96 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 44, myb domain protein r1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G195000 [exp] 339 / 7e-114 AT3G55730 295 / 7e-97 myb domain protein 109 (.1) Potri.008G062700 [exp] 332 / 3e-111 AT3G55730 290 / 7e-95 myb domain protein 109 (.1) Potri.009G096000 [exp] 166 / 1e-48 AT4G37260 222 / 1e-71 myb domain protein 73 (.1) Potri.008G070900 [exp] 160 / 1e-46 AT4G37260 173 / 2e-52 myb domain protein 73 (.1) Potri.007G048900 [exp] 161 / 5e-46 AT4G37260 273 / 2e-90 myb domain protein 73 (.1) Potri.002G122600 [exp] 158 / 3e-45 AT4G37260 258 / 6e-85 myb domain protein 73 (.1) Potri.001G300200 [exp] 155 / 7e-45 AT4G37260 203 / 1e-64 myb domain protein 73 (.1) Potri.014G022500 [exp] 157 / 1e-44 AT4G37260 226 / 3e-72 myb domain protein 73 (.1) Potri.014G035100 [exp] 154 / 3e-44 AT4G37260 183 / 1e-56 myb domain protein 73 (.1) Potri.005G142600 [exp] 155 / 1e-43 AT4G37260 246 / 7e-80 myb domain protein 73 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10040239 pacid=23174127 polypeptide=Lus10040239 locus=Lus10040239.g ID=Lus10040239.BGIv1.0 annot-version=v1.0 ATGGGGAGCTTGGACGGCTTCGATGAGGCGATGAGGGAAGCAGCGGCAACGGAAGAGGAGGACGAGGGAACCGCCGGAGACCTCACGGAATCCCCGACTG GTGGTTGCGGCGGTGATTCGTCTGAGCTCGGGGGAGTTAGCGGCGGCGGTGGTAATGGGAGTGGTGGAGGAGTGGTGAACAGTAGAGTGAAGGGACCATG GTCGCCGGAGGAAGATGGGGTGCTGAGTCAACTGGTGAGTAAGTTCGGGGCGAGGAATTGGAGCTTGATCGCCCGTGGGATTCCTGGGAGGTCTGGGAAA TCTTGCCGGCTCAGGTGGTGTAACCAGCTTGACCCTGGTTTGAAACGCAAGCCTTTCACTGACGAAGAAGACCAGATCATCATTTCAGCTCATGCAGTCC ATGGAAACAAATGGGCGGTAATCTCAAGACTACTCCCTGGTAGAACAGATAACGCAATCAAGAACCACTGGAATTCCACTCTGCGGCGCAGGAAAACCGA GCTACCAAGAGGTAATAAACATGCTTCATCTTTCGGCATGATGATCGAAAATTGTAACCACGACAGAAGAAACGCATCCCCAGACGAAGAAACTCCTTCC AATATGGGCGATGGCAATTCGGTGAAGTCTGTCGAAGAAATCCATTATATTGTCTCCCCACCAAAAGAACGGCCCACTACCGTTCCTCGGCCAGTGGCAC GAGTCGGCGCATTCAGTGTTTACGTTCCTCCAGGTGGTAGTTCGAAATCTGGCTCCATCGGTTCAAGACAAGCTCCGACTCAAGAACCTTTGGTCAAAGC TTCGAAGCCTGACTTTGGGATCTGCAAGCTTCTTGAGGATATTCGTAGCGAGCCGATCGTTCCCTCTACATGTGGTTTCGGTTGCTGTTCGACACCAAGC AGAGGTGGACATTCTCGGAGCTCGTTATTGGGACCGGAGTTTGTAGACTACGAAGAGCCGCCTTGTTTCTCGAGTCAAGAACTGATTTCGATCGCCACTG ATTTGAACAACATAGCTTGGATCAAGAGTGGGCTTGAGAACAGTACTAACAGTGGAGAATTATCAGGCAGTCATGGAATCATCCATCAAGGGCCACAATT CTCAGTGTCCCAAATGGGTATGCCGGAACAGAATCTGAGCAAGTTCGTGGGGACGATGACAGAAGCTTTACCGAACCATAAATCTTTGGCGATGAGAGCT GAAGTTGAAAGCTTGAGCTGA
AA sequence Show only first row Show all	>Lus10040239 pacid=23174127 polypeptide=Lus10040239 locus=Lus10040239.g ID=Lus10040239.BGIv1.0 annot-version=v1.0 MGSLDGFDEAMREAAATEEEDEGTAGDLTESPTGGCGGDSSELGGVSGGGGNGSGGGVVNSRVKGPWSPEEDGVLSQLVSKFGARNWSLIARGIPGRSGK SCRLRWCNQLDPGLKRKPFTDEEDQIIISAHAVHGNKWAVISRLLPGRTDNAIKNHWNSTLRRRKTELPRGNKHASSFGMMIENCNHDRRNASPDEETPS NMGDGNSVKSVEEIHYIVSPPKERPTTVPRPVARVGAFSVYVPPGGSSKSGSIGSRQAPTQEPLVKASKPDFGICKLLEDIRSEPIVPSTCGFGCCSTPS RGGHSRSSLLGPEFVDYEEPPCFSSQELISIATDLNNIAWIKSGLENSTNSGELSGSHGIIHQGPQFSVSQMGMPEQNLSKFVGTMTEALPNHKSLAMRA EVESLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55730	MYB	ATMYB109	myb domain protein 109 (.1)		Lus10040239 [exp]	0	1
AT1G80600		WIN1	HOPW1-1-interacting 1 (.1)		Lus10031196 [exp]	5.2	0.8952
AT4G03320		AtTic20-IV, TIC...	translocon at the inner envelo...		Lus10039783 [exp]	6.6	0.8953
AT2G03430			Ankyrin repeat family protein ...		Lus10037116 [exp]	8.7	0.8913
AT5G37370		ATSRL1	PRP38 family protein (.1.2.3.4...		Lus10015203 [exp]	12.7	0.8900
AT1G72330		ALAAT2	alanine aminotransferase 2 (.1...		Lus10037455 [exp]	12.8	0.9013
AT5G22060		ATJ2	ARABIDOPSIS THALIANA DNAJ HOMO...		Lus10002733 [exp]	13.2	0.8788
AT2G39770		VTC1, SOZ1, GMP...	VITAMIN C DEFECTIVE 1, SENSITI...		Lus10024356 [exp]	13.5	0.8868
AT5G13420			Aldolase-type TIM barrel famil...		Lus10032613 [exp]	19.4	0.8889
AT2G27450		CPA, ATNLP1, NL...	nitrilase-like protein 1 (.1.2...		Lus10004862 [exp]	22.2	0.8932
AT4G06634	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10000585 [exp]	22.3	0.8601

Compare expression of checked genes

Lus10040239 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.