Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06060 342 / 2e-119 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29260 310 / 1e-105 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29290 297 / 2e-101 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G29360 296 / 6e-101 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29350 293 / 4e-100 SAG13 senescence-associated gene 13 (.1.2.3) AT2G29340 286 / 2e-97 NAD-dependent epimerase/dehydratase family protein (.1.2.3) AT2G30670 285 / 5e-97 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29150 285 / 8e-97 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29330 285 / 1e-96 TRI tropinone reductase (.1) AT1G07450 283 / 4e-96 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004704 [exp] 491 / 5e-178 AT5G06060 387 / 3e-137 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040736 [exp] 326 / 8e-113 AT5G06060 382 / 3e-135 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016498 [exp] 309 / 5e-106 AT5G06060 351 / 7e-123 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016497 [exp] 302 / 2e-103 AT5G06060 345 / 1e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040730 [exp] 303 / 4e-103 AT2G29260 405 / 2e-142 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040733 [exp] 300 / 1e-102 AT5G06060 346 / 5e-121 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10001560 [exp] 297 / 1e-99 AT5G06060 350 / 1e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040735 [exp] 291 / 3e-99 AT5G06060 341 / 4e-119 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004984 [exp] 286 / 3e-97 AT5G06060 343 / 6e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G059100 [exp] 371 / 7e-131 AT5G06060 416 / 8e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G244900 [exp] 306 / 3e-104 AT2G29260 387 / 4e-135 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G026000 [exp] 302 / 2e-103 AT2G29290 362 / 2e-127 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.001G245000 [exp] 298 / 8e-102 AT2G29150 343 / 9e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.010G142600 [exp] 294 / 2e-100 AT2G29290 354 / 3e-124 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.005G039500 [exp] 293 / 6e-100 AT2G29150 351 / 5e-123 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G039300 [exp] 286 / 5e-97 AT2G29150 356 / 7e-125 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G089800 [exp] 279 / 2e-94 AT2G29150 307 / 2e-105 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G089700 [exp] 271 / 2e-91 AT5G06060 320 / 6e-111 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G026100 [exp] 229 / 3e-75 AT2G29150 284 / 5e-97 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10040271 pacid=23174074 polypeptide=Lus10040271 locus=Lus10040271.g ID=Lus10040271.BGIv1.0 annot-version=v1.0 ATGGCAGCGACAAACGGCCACCACCATTCCCCGTCTGCGAGATGGTCCCTTCACGGCTTCACGGCTCTCGTCACCGGCGGCACCCGTGGCATCGGATATG CAACAGTAGAGGAACTTGCTGGACTGGGAGCTAAGGTACATACGTGTTCTAGAAACGAAGCTGAGCTCAACAAGTTCTTGCAGCAATGCAAGGAGAAAGG GTTCTCCGTCTCCGGTTCAGTCTGCGACGTGTCGTCTCCTTCCGAAAGGCAGAAGCTCGTCCGCGATGTTTCCGCGCTTTACAACGGCACTCTCAACATT CTCGTGAATAACGTCGGGACGAATGCAAGGAAGCCGACTACGGAGTATACAACGGAGGAATACCTGAGGCTGATGTCGGTTAATTTGGAATCGGCGTACC ATCTCTGCCAATTGGCACACCCGCTTCTGAAGAAATCAGGAGCTGGGTCTGTCGTCTTCGTTTCGTCGGTAGCCGGTGTGTTACACATAGGCAGCGGATC CATTTATGGTCTCTCCAAAGGTGCAATAAACCAGCTGACAAAAAATCTGGCTTGTGAGTGGGCAAAGGATAACATCAGAGTAAACTGCGTGGCTCCTTGG TACACTAGAACTTCCCTTGTTGAACATCTGCTGGAGAAGAAGGAATTCTTGCAGCAGATAGTGGCGAGAACGCCACTGCAAAGGGTTGGGGAGCCGAATG AAGTGTCGAGCTTGGTGGGATTCCTGTGCCTACCTGCTGCTTCTTACATCACTGGGCAGGTTATCTCTGTGGACGGTGGAATGACTGTGAATGGGTTCAA CCCTCCGATCAACCTAGATTGA
AA sequence Show only first row Show all	>Lus10040271 pacid=23174074 polypeptide=Lus10040271 locus=Lus10040271.g ID=Lus10040271.BGIv1.0 annot-version=v1.0 MAATNGHHHSPSARWSLHGFTALVTGGTRGIGYATVEELAGLGAKVHTCSRNEAELNKFLQQCKEKGFSVSGSVCDVSSPSERQKLVRDVSALYNGTLNI LVNNVGTNARKPTTEYTTEEYLRLMSVNLESAYHLCQLAHPLLKKSGAGSVVFVSSVAGVLHIGSGSIYGLSKGAINQLTKNLACEWAKDNIRVNCVAPW YTRTSLVEHLLEKKEFLQQIVARTPLQRVGEPNEVSSLVGFLCLPAASYITGQVISVDGGMTVNGFNPPINLD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10040271 [exp]	0	1
AT2G40340	AP2_ERF	AtERF48, DREB2C	Integrase-type DNA-binding sup...		Lus10012226 [exp]	2.2	0.9447
AT4G15440		CYP74B2, HPL1	hydroperoxide lyase 1 (.1)		Lus10035289 [exp]	4.1	0.9271
AT5G57260		CYP71B10	"cytochrome P450, family 71, s...		Lus10030189 [exp]	4.6	0.9459
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10033743 [exp]	4.8	0.9515
AT1G76070			unknown protein		Lus10005623 [exp]	4.9	0.9352
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10011202 [exp]	6.7	0.9394
AT1G67340			HCP-like superfamily protein w...		Lus10015784 [exp]	6.8	0.9087
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Lus10014688 [exp]	6.9	0.9199
AT3G19615			unknown protein		Lus10042265 [exp]	7.5	0.9408
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10001640 [exp]	9.2	0.9101

Compare expression of checked genes

Lus10040271 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.