Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39730 712 / 0 RCA rubisco activase (.1.2.3) AT1G73110 343 / 2e-114 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G03670 45 / 0.0001 CDC48B cell division cycle 48B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004708 [exp] 892 / 0 AT2G39730 733 / 0.0 rubisco activase (.1.2.3) Lus10000518 [exp] 769 / 0 AT2G39730 790 / 0.0 rubisco activase (.1.2.3) Lus10002710 [exp] 762 / 0 AT2G39730 787 / 0.0 rubisco activase (.1.2.3) Lus10003234 [exp] 682 / 0 AT2G39730 757 / 0.0 rubisco activase (.1.2.3) Lus10010868 [exp] 639 / 0 AT2G39730 642 / 0.0 rubisco activase (.1.2.3) Lus10041627 [exp] 348 / 3e-116 AT1G73110 639 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10035616 [exp] 323 / 1e-108 AT2G39730 362 / 5e-124 rubisco activase (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G058500 [exp] 725 / 0 AT2G39730 803 / 0.0 rubisco activase (.1.2.3) Potri.010G200500 [exp] 719 / 0 AT2G39730 797 / 0.0 rubisco activase (.1.2.3) Potri.016G101100 [exp] 678 / 0 AT2G39730 696 / 0.0 rubisco activase (.1.2.3) Potri.001G037300 [exp] 351 / 1e-117 AT1G73110 663 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10040275 pacid=23173905 polypeptide=Lus10040275 locus=Lus10040275.g ID=Lus10040275.BGIv1.0 annot-version=v1.0 ATGGCCGCCGCCATCCCAACCGTCGGAGCCGCCGTCAACCGCTCACCGCTGGCTTTGAATGGGTCAGTTGGAGGCGGATCGACATCAGTCCCAATAACAT CAACTTTCCTGGGGAAAAGCTTGATCAAATCCGGAAGGCTATTCTCCAAAGTGTCACCCTCCACTAGGAACTTGAGGATTGTGGCGCAAGCTGCCGCTGC GGATGACGCCGACGAAGAGAAGCAAACTGACAAGGACAGGTGGGGACACCTGGTGAAAGACATGTCGGACGACCAACAGGACATCACCCGCGGGAAAGGT ATGGTGGACTCTCTGTTCCAGGCTCCCGAGATGGCTGGAACTCACTACGCGGTCATGAGCTCGTACGACTACGTCAGCAAAGGGCTCCGAACTTACGATT TCGACAACATGATGGGGGGATTCTACATTGCACCTGCCTTCATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCTTGAACCTCCCTAACATTAAGGT TCCCCTGATTTTGGGTGTGTGGGGAGGCAAAGGTCAAGGGAAATCATTCCAGTGTGAACTAGTGTTTGCCAAGATGGGGATCAACCCAATCATGATGAGT GCCGGAGAGTTGGAAAGCGGCAACGCCGGAGAGCCGGCGAAGCTGATCAGGCAGAGGTACCGTGAGGCCTCCGACATAATCAAGAAGGGCAAAATGTGCT GCCTCTTCATCAACGATCTCGACGCCGGTGCGGGTCGAATGGGCGGGACCACCCAGTACACGGTCAACAACCAGATGGTCAACGCCACCCTCATGAACAT CGCCGACAACCCGACCAACGTCCAGCTCCCGGGAATGTACAACAAGGAAGAGAACGCCCGCGTTCCGATCATCGTCACTGGTAACGATTTCTCGACGCTA TACGCCCCGCTAATCCGTGACGGTCGTATGGAGAAGTTCTACTGGGCCCCCACTAGGGACGACCGGGTTGGAGTTTGCACCGGTATCTTCAGGACCGATA ATGTCCCCAAGGATGACATCGTCAAGCTCGTTGACTCCTTCCCCGGCCAATCTATCGATTTCTTCGGGGCGTTGAGGGCTAGGGTGTACGACGACGAGGT GAGGAAGTGGATATCGGGAGTCGGGGTGGACACAATCGGGAAGAGGCTAGTCAACTCGAAGGAAGGGCCGCCGACATTCGAGCAGCCAACGATGACATTG GAGAAGCTGTTGGAGTATGGAAACATGCTTGTGCAGGAGCAAGACAACGTGAAGAGAGTGCAGTTGGCTGAACAGTACATGAGCGAGGCTGCTCTTGGTG ATGCCAACAAGGATGCCATTGAGAGGGGAAGCTTTTATGGAGCCACTGATGAAATCCCAGCTTCATCCTAG
AA sequence Show only first row Show all	>Lus10040275 pacid=23173905 polypeptide=Lus10040275 locus=Lus10040275.g ID=Lus10040275.BGIv1.0 annot-version=v1.0 MAAAIPTVGAAVNRSPLALNGSVGGGSTSVPITSTFLGKSLIKSGRLFSKVSPSTRNLRIVAQAAAADDADEEKQTDKDRWGHLVKDMSDDQQDITRGKG MVDSLFQAPEMAGTHYAVMSSYDYVSKGLRTYDFDNMMGGFYIAPAFMDKLVVHITKNFLNLPNIKVPLILGVWGGKGQGKSFQCELVFAKMGINPIMMS AGELESGNAGEPAKLIRQRYREASDIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIIVTGNDFSTL YAPLIRDGRMEKFYWAPTRDDRVGVCTGIFRTDNVPKDDIVKLVDSFPGQSIDFFGALRARVYDDEVRKWISGVGVDTIGKRLVNSKEGPPTFEQPTMTL EKLLEYGNMLVQEQDNVKRVQLAEQYMSEAALGDANKDAIERGSFYGATDEIPASS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39730		RCA	rubisco activase (.1.2.3)		Lus10040275 [exp]	0	1
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10016176 [exp]	1.0	0.9656
AT2G39730		RCA	rubisco activase (.1.2.3)		Lus10004708 [exp]	1.4	0.9474
AT2G39730		RCA	rubisco activase (.1.2.3)		Lus10000518 [exp]	5.5	0.9399
AT2G13360		SGAT, AGT1, AGT	L-serine:glyoxylate aminotrans...		Lus10022424 [exp]	6.9	0.9188
AT4G33860			Glycosyl hydrolase family 10 p...		Lus10033786 [exp]	8.8	0.8967
AT1G42970		GAPB	glyceraldehyde-3-phosphate deh...		Lus10012243 [exp]	9.2	0.9234
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10035635 [exp]	9.2	0.8841
AT4G38970		FBA2	fructose-bisphosphate aldolase...		Lus10031088 [exp]	9.4	0.9079
AT3G02730		TRXF1, ATF1	thioredoxin F-type 1 (.1)		Lus10026999 [exp]	10.7	0.9203
AT4G39480		CYP96A9	"cytochrome P450, family 96, s...		Lus10018161 [exp]	17.0	0.8971

Compare expression of checked genes

Lus10040275 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.