Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07530 557 / 0 GRAS SCL14, ATGRAS2 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) AT2G29060 517 / 2e-174 GRAS GRAS family transcription factor (.1) AT2G37650 496 / 6e-166 GRAS SCL9 GRAS family transcription factor (.1) AT2G29065 451 / 1e-149 GRAS family transcription factor (.1) AT5G59450 435 / 9e-144 GRAS SCL11 GRAS family transcription factor (.1) AT1G07520 437 / 2e-143 GRAS GRAS family transcription factor (.1) AT3G46600 412 / 6e-137 GRAS GRAS family transcription factor (.1.2.3) AT1G50600 221 / 6e-63 GRAS SCL5 scarecrow-like 5 (.1) AT5G48150 219 / 6e-63 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT2G04890 211 / 7e-61 GRAS SCL21 SCARECROW-like 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023404 [exp] 1311 / 0 AT1G07530 595 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10024384 [exp] 572 / 0 AT2G37650 610 / 0.0 GRAS family transcription factor (.1) Lus10016521 [exp] 516 / 4e-173 AT1G07530 764 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10040790 [exp] 511 / 4e-171 AT1G07530 762 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10010845 [exp] 503 / 2e-169 AT2G37650 571 / 0.0 GRAS family transcription factor (.1) Lus10040787 [exp] 501 / 7e-169 AT1G07530 555 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10016519 [exp] 462 / 4e-158 AT1G07530 449 / 3e-153 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10004968 [exp] 474 / 2e-157 AT1G07530 584 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10001577 [exp] 474 / 2e-157 AT1G07530 573 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G057400 [exp] 864 / 0 AT2G37650 568 / 0.0 GRAS family transcription factor (.1) Potri.010G202300 [exp] 751 / 0 AT1G07530 498 / 2e-167 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.006G086600 [exp] 662 / 0 AT2G37650 723 / 0.0 GRAS family transcription factor (.1) Potri.009G032700 [exp] 635 / 0 AT1G07530 788 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.001G241700 [exp] 596 / 0 AT1G07530 759 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.001G241800 [exp] 537 / 0 AT1G07530 665 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.009G033100 [exp] 533 / 0 AT2G29060 506 / 1e-171 GRAS family transcription factor (.1) Potri.009G032800 [exp] 535 / 8e-180 AT1G07530 666 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.001G242000 [exp] 521 / 2e-176 AT2G29060 488 / 9e-165 GRAS family transcription factor (.1) Potri.009G033300 [exp] 508 / 8e-171 AT1G07530 514 / 4e-173 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10040284 pacid=23173949 polypeptide=Lus10040284 locus=Lus10040284.g ID=Lus10040284.BGIv1.0 annot-version=v1.0 ATGCGCTCTGAAACAGAGCAGCTTTTTCACGTTCTTCCCGTTACTTTCAATCCTCTTTCTTTCTCCAAGTATTTCCCTCCTCCTCCTCCAAGCACTCCTC CTTCTCCAGGGGGCTTGTTTGATTCTGTCAATGGATTGAAGCTCAGCCATGAAGCGGTTTCAGCTTTAACTACTAGGAAACTCATTTCCGGGCTGAAATC AGGCGATACTCTTGTCAATAAGAACCTTTTGCCGCACAATGATCCTTTGCCACCCATTCATCCTAGTATAAACCAAGCTGTACAGTCGTCCCGTGATGAT TTCGACTTCAACGATGTGGTTCTTAAGTATATTGATGATATGCTCATGGAAGAAAACATGGAGGAGAAAACATGTATGTTTCAGGAGTCCTCAGCTGCAC TTCAGGCTGCTGAGAAATCACTCTATGAGCTTATTGGGGAAAGATATCCACCGTTATCTGTTACTGAGCCGATACCTCACCCTGATCAGTACCGTGATAG TTTAGATGATCAGCATGATTCAAATCGTCGAGCTTGTTCTAGTAACTCAAGCTGCATCAGTTCTGGTAGTAGTTTGATTGATTCTGGCCGGAGTTATGAC GTGGATGAGTGTAGATCGTCCACTAGGAATGCTTCCTATTCTGTTTCGCTTACAGCACAGAGCTCGGATTCTCCAGTGAGCAATATCATAATTCCCGACA TGTTTACCGAATCCAATTCTGCCGATCAGTTTAGGAGGGGGTTTGAGGAGGCAAGTAAGTTCATCCCCAGAGCTAGTTTGCTTTTTGACATGGAAAGTAC CAGGATCTCTCTGAAAGATTTGAAGGAGCAGAATAAGGAAGGAGAAATCAAAGTGGTTAATAAACTTGAGAATAACTACTGTTTTGAGCAGCCAAGGGGG AAAAAGAATCCGCATCCTGAGTATCTAAACTTAGAAGGAGCAGCAAGAAGTAGTAAACAGTCAGCAGTTTCTTCGGAATCAACTGTGAGTTCAGAAGACT TCGACAGGATACTGCTTAACTGTGCTCAGGATCCGGAAGCTACACTTCGTGCAGCTATGGAGAGTGAGAAGAACAGGACTGCAGTGCAGAATAAACTAAC GAAATCGTCTAATGGTGGAAAAGCTCGAGGGAAGAGGCAGGGGGGAACTAAGAAAAACGTGGTGGATTTAAGGACACTCTTAACTCTTTGTGCACAGGCC GTTGCTGCTGATGATCGGAGGAACGCGAATGATCTCTTGAAACAAATCAGGGATAATGCTCCCCCGACCGGGGATGGTATGCAAAGATTGGCTAGTATTT TCGCTGATGGTTTGGAGGCAAGGATGGCTGGTTCCGGAACCAAAATTTACAAAGCACTGATCACAAAGGCGACCTCAGCTGCCGATGTATTGAAAGCATA CCAGCTGTTTCTAGCTGCATGTCCATTCAAGAAGCTGTCAAATTATTTTTCAAACAAAACGATTATGAACTTGGCTCAACGTGCAAAAAAGCTTCACATT GTTGATTTCGGGATTCTATATGGTTTCCAGTGGCCTTGCCTCATTCAGCGCTTATCCTCTATGCCTGGTGGACCTCCGAAACTTAGAATCACCGGAGTCG ATTTACCGAATCCGGGTTTCAGACCAGCCGAAAGGGTTGAGGAGACTGGCTGTCGATTAGCAAACTATGCTAGGACATTCAATGTTCCGTTTGAGTTCAA TGCCATTGCGCAGAAGTGGGACACTATTAAGATCGAGGATTTGAAGATCGAGAAGGATGAAGTGCTGGTAGTGAATTGCATGTACAGGTTGAGAAACTTG CTTGACGAGACTGTGGTGGTGGACTGCCCGAGGAATATTGTTCTTAACCTAGTGAGGAGGATGAATCCGGAGGTTTTCATACTCGGTATCGTTAATGGAT CATACAGTGCTCCATTCTTCATCACTCGATTCCGGGAGGCGCTCTTCCATTTCTCTACTGTGTTTGATATGCTGGAGACGACTGTGCCTCGTGATATGCC GGAGAGGATGCTGATCGAAAGGGATATTTTTGGGTGGGAGGCGATGAATGTGATTGCTTGTGAAGGTGCCGAGAGACTGGAGAGGCCGGAAACATACAAG CAATGCCAAATCAGAGCTCAGAGGGCTGGATTCTCACAACTGCCTTTGAACAGGGAGATATTTAGCACTGCGAAGGAGAAGGTGAAAGAGAATTACAACA AGGATTTCATGATCGACGAGGATGGTGAGTGGTTTCTTCAAGGGTGGAAGGGGAGAATTGTTTATGCTCTCTCTTCGTGGAAGGCTAGTGCATAG
AA sequence Show only first row Show all	>Lus10040284 pacid=23173949 polypeptide=Lus10040284 locus=Lus10040284.g ID=Lus10040284.BGIv1.0 annot-version=v1.0 MRSETEQLFHVLPVTFNPLSFSKYFPPPPPSTPPSPGGLFDSVNGLKLSHEAVSALTTRKLISGLKSGDTLVNKNLLPHNDPLPPIHPSINQAVQSSRDD FDFNDVVLKYIDDMLMEENMEEKTCMFQESSAALQAAEKSLYELIGERYPPLSVTEPIPHPDQYRDSLDDQHDSNRRACSSNSSCISSGSSLIDSGRSYD VDECRSSTRNASYSVSLTAQSSDSPVSNIIIPDMFTESNSADQFRRGFEEASKFIPRASLLFDMESTRISLKDLKEQNKEGEIKVVNKLENNYCFEQPRG KKNPHPEYLNLEGAARSSKQSAVSSESTVSSEDFDRILLNCAQDPEATLRAAMESEKNRTAVQNKLTKSSNGGKARGKRQGGTKKNVVDLRTLLTLCAQA VAADDRRNANDLLKQIRDNAPPTGDGMQRLASIFADGLEARMAGSGTKIYKALITKATSAADVLKAYQLFLAACPFKKLSNYFSNKTIMNLAQRAKKLHI VDFGILYGFQWPCLIQRLSSMPGGPPKLRITGVDLPNPGFRPAERVEETGCRLANYARTFNVPFEFNAIAQKWDTIKIEDLKIEKDEVLVVNCMYRLRNL LDETVVVDCPRNIVLNLVRRMNPEVFILGIVNGSYSAPFFITRFREALFHFSTVFDMLETTVPRDMPERMLIERDIFGWEAMNVIACEGAERLERPETYK QCQIRAQRAGFSQLPLNREIFSTAKEKVKENYNKDFMIDEDGEWFLQGWKGRIVYALSSWKASA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Lus10040284 [exp]	0	1
AT1G60010			unknown protein		Lus10030651 [exp]	10.2	0.8154
AT4G12570		UPL5	ubiquitin protein ligase 5 (.1...		Lus10010493 [exp]	11.0	0.8601
AT5G27320		ATGID1C, GID1C	GA INSENSITIVE DWARF1C, alpha/...		Lus10018963 [exp]	12.3	0.8579
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Lus10040787 [exp]	13.8	0.7980
AT2G32710		ICK7, ACK2, KRP...	KIP-RELATED PROTEIN 4, INTERAC...		Lus10043139 [exp]	17.1	0.7813
AT3G16910		AAE7, ACN1	ACETATE NON-UTILIZING 1, acyl-...		Lus10037735 [exp]	18.3	0.8430
AT4G17570	GATA	GATA26	GATA transcription factor 26 (...		Lus10000587 [exp]	21.3	0.8245
AT2G31220	bHLH	bHLH010	basic helix-loop-helix (bHLH) ...		Lus10020478 [exp]	22.2	0.7624
AT1G57790			F-box family protein (.1)		Lus10014208 [exp]	23.7	0.8034
AT1G12855			F-box family protein (.1)		Lus10042738 [exp]	27.3	0.8123

Compare expression of checked genes

Lus10040284 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.