Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13550 884 / 0 SULTR4;1 sulfate transporter 4.1 (.1) AT3G12520 880 / 0 SULTR4;2 sulfate transporter 4;2 (.1.2) AT3G51895 365 / 5e-117 AST12, ATST1, SULTR3;1 sulfate transporter 3;1 (.1) AT4G08620 356 / 2e-113 SULTR1.2, SULTR1;1 sulphate transporter 1;1 (.1) AT1G22150 335 / 3e-105 SULTR1;3 sulfate transporter 1;3 (.1) AT3G15990 332 / 4e-104 SULTR3;4 sulfate transporter 3;4 (.1) AT1G23090 331 / 5e-104 SULTR3;3, AST91 sulfate transporter 91 (.1) AT4G02700 330 / 2e-103 SULTR3;2, AST77 sulfate transporter 3;2 (.1) AT1G78000 325 / 2e-101 SEL1, SULTR1;2 SELENATE RESISTANT 1, sulfate transporter 1;2 (.1.2) AT5G19600 323 / 4e-101 SULTR3;5 sulfate transporter 3;5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023440 [exp] 1165 / 0 AT5G13550 955 / 0.0 sulfate transporter 4.1 (.1) Lus10030321 [exp] 927 / 0 AT5G13550 830 / 0.0 sulfate transporter 4.1 (.1) Lus10003294 [exp] 590 / 0 AT5G13550 674 / 0.0 sulfate transporter 4.1 (.1) Lus10041111 [exp] 379 / 3e-122 AT1G22150 1001 / 0.0 sulfate transporter 1;3 (.1) Lus10029616 [exp] 363 / 3e-116 AT1G22150 973 / 0.0 sulfate transporter 1;3 (.1) Lus10036437 [exp] 364 / 4e-116 AT1G22150 991 / 0.0 sulfate transporter 1;3 (.1) Lus10006612 [exp] 342 / 3e-108 AT3G51895 966 / 0.0 sulfate transporter 3;1 (.1) Lus10025767 [exp] 330 / 2e-103 AT3G15990 947 / 0.0 sulfate transporter 3;4 (.1) Lus10039364 [exp] 331 / 1e-102 AT3G51895 966 / 0.0 sulfate transporter 3;1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G049500 [exp] 986 / 0 AT5G13550 921 / 0.0 sulfate transporter 4.1 (.1) Potri.010G211400 [exp] 962 / 0 AT5G13550 898 / 0.0 sulfate transporter 4.1 (.1) Potri.005G167300 [exp] 372 / 1e-119 AT1G22150 996 / 0.0 sulfate transporter 1;3 (.1) Potri.002G092500 [exp] 360 / 4e-115 AT1G22150 973 / 0.0 sulfate transporter 1;3 (.1) Potri.010G082700 [exp] 352 / 7e-112 AT3G51895 995 / 0.0 sulfate transporter 3;1 (.1) Potri.005G213500 [exp] 347 / 8e-110 AT3G51895 1040 / 0.0 sulfate transporter 3;1 (.1) Potri.002G049500 [exp] 345 / 3e-109 AT3G51895 1028 / 0.0 sulfate transporter 3;1 (.1) Potri.010G111700 [exp] 340 / 4e-107 AT1G23090 1028 / 0.0 sulfate transporter 91 (.1) Potri.008G156600 [exp] 336 / 9e-106 AT3G51895 949 / 0.0 sulfate transporter 3;1 (.1) Potri.006G158900 [exp] 328 / 8e-103 AT5G19600 789 / 0.0 sulfate transporter 3;5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0502 [flax] [poplar] STAS PF01740 [flax] [poplar] STAS STAS domain CL0062 [flax] [poplar] APC PF00916 [flax] [poplar] Sulfate_transp Sulfate permease family
Representative CDS sequence Show only first row Show all	>Lus10040319 pacid=23173840 polypeptide=Lus10040319 locus=Lus10040319.g ID=Lus10040319.BGIv1.0 annot-version=v1.0 ATGAACTCCTCCTCCACTTACGCATCCTCCAGCTCCATCGACATTTCTTCTTTTTCTCCCTCCGCCATGCCCACCCCCGGATTCTCCCGCCCTGTCAAGA TCATTCCTCTTCAGCACCCCTCCGCGGCTGCAGCTGTAGCTGCCTCCTCTTCTCCGGCCGATTTCTTCTCCAGTTTCGTCGCGAAATGCAAACGCCTCAC CTTCCTCCAGTTGATCGAGCGCCTCTTCCCCTGTTGCCGTTGGATTCGTGCCTACCGATGGCGCGACCATTTCCAGGTCGATCTCCTTGCCGGCCTCACC ATCGGTATCATGCTCGTCCCTCAGGCAATGTCTTATGCGAAATTAGCAGGGCTTGAACCAATTTACGGACTGTACACTGGTTTTGTCCCAATCTTTGTGT ATGCTATCTTTGGATCATCGCGGCAGCTGGCTATTGGCCCAGTAGCTCTTGTTTCTCTGCTGGTGTCTAATGTTCTAAAGGGAATTGCTGGTTCTTCCGA TGAGCTGTACACTGAACTTGCCATAGTACTGGCACTTATGGTTGGAATCCTGGAGTGTATTATGGGGCTTTTGAGGCTCGGTTGGCTTTTACGTTTCATC AGCCACTCTGTTATATCTGGGTTTACAACTGCTTCTGCTGTTGTCATTGGACTATCGCAAGCAAAGTATTTTTTGGGATACAACATAATACAAAGCAGCA AAATTGTGCCACTGATTAAGAGCATAATTGATGGAGCAGGCCAGTTCCAATGGCCTCCTTTCGTAATGGGATCTGGCATTCTCGCTGTGCTTCTGATTAT GAAGCACTTGGGAAAATCGAGGAAGCAATTCAAGTTTCTTCGAGCTGCAGGTCCCTTAACAGGTGTCATTTTGGGGGCCACTTTGGCAAAAATATTTCAT CAACCGTCTATTTCATTGATAGGAGACATACCTCAGGGTCTTCCAAGCTTCTCTATTCCAAAGAATTTTGGGTATGCAAAGTCTCTAATACCAACAGCAT TTCTCATCACTGGCGTAGCAATACTGGAATCTGTGGGAATTGCCAAAGCCTTGGCTGCAAAGAACGGATATGAACTGGATTCAAGTCAGGAGCTGGTTGG TCTTGGTTTGGCCAATATCTTTGGGTCTTTCTTCTCTGCATATCCCTCAACAGGTTCCTTTTCTAGGTCAGCTGTCAGTAATGAGAGTGGAGCGAAAACC GGCTTATCCGGAGTCATTACTGGAATAGTTATGTGTTGTGCTCTATTATTCTTGACTCCATTGTTCAAGTCTATACCACAGTGTGCTCTGGCTGCAATTG TTGTGTCTGCTGTGATTGGCCTGGTGGAGTATGAGGAGGCAATCTTCCTATGGCGTGTGGATAAGAAAGATTTTGTTCTTTGGTTCATTACTTGCACCAC AACCTTGTTCCTCGGGATCGAGATTGGTGTTCTTATAGGGGTCGGTGTATCACTTGCTTTTGTCATCCACGAGTCTGCAAATCCCCACATCGCTGTCCTG GGGCGACTTCCTGGCACCACTGTGTATAGAAATACTCAACAATACCCTGAAGCATATACATATCACGGAATCGTCATCGTTCGCGTTGATGCACCAATAT ATTTTGCAAATACAAGCTACATAAAAGACAGACTACGAGAATACGAGCTTAAGGTCGACAAATCAACGCGACACGGTCCAGAAGTCGAAAGGATTCACTT CGTGATTTTGGAGATGTCCCCTGTTACGTACATAGACTCCAGTGCTATCCAAGCTCTAAAAGACTTGTACCAAGAGTACAAATCCCGGGACATCCAGATT GCTATCTCGAATCCAAACCGAGAAGTTCTACTAACACTCTCGAAATCTGGTATCGTGGAACTTATTGGAAAGGAATGGTTCTTTGTTCGAGTACATGATG CGGTCCAAGTGTGCCTTCGGCACGTAGAAAGCTTGCACCAATCGCCAGTGATAGCATCAGACGGAACCAAACCCAGTTTGTATGAAAGGTTAATAAAACA GAATGGTATATCTGCTGCAGACTTAGAAACTGGGCAGAGAACAATAGCTTCCCGGAACGGGGACTCAAGATTGGAGCCATTGTTGTCGAATAAGTTTTCT ACATGA
AA sequence Show only first row Show all	>Lus10040319 pacid=23173840 polypeptide=Lus10040319 locus=Lus10040319.g ID=Lus10040319.BGIv1.0 annot-version=v1.0 MNSSSTYASSSSIDISSFSPSAMPTPGFSRPVKIIPLQHPSAAAAVAASSSPADFFSSFVAKCKRLTFLQLIERLFPCCRWIRAYRWRDHFQVDLLAGLT IGIMLVPQAMSYAKLAGLEPIYGLYTGFVPIFVYAIFGSSRQLAIGPVALVSLLVSNVLKGIAGSSDELYTELAIVLALMVGILECIMGLLRLGWLLRFI SHSVISGFTTASAVVIGLSQAKYFLGYNIIQSSKIVPLIKSIIDGAGQFQWPPFVMGSGILAVLLIMKHLGKSRKQFKFLRAAGPLTGVILGATLAKIFH QPSISLIGDIPQGLPSFSIPKNFGYAKSLIPTAFLITGVAILESVGIAKALAAKNGYELDSSQELVGLGLANIFGSFFSAYPSTGSFSRSAVSNESGAKT GLSGVITGIVMCCALLFLTPLFKSIPQCALAAIVVSAVIGLVEYEEAIFLWRVDKKDFVLWFITCTTTLFLGIEIGVLIGVGVSLAFVIHESANPHIAVL GRLPGTTVYRNTQQYPEAYTYHGIVIVRVDAPIYFANTSYIKDRLREYELKVDKSTRHGPEVERIHFVILEMSPVTYIDSSAIQALKDLYQEYKSRDIQI AISNPNREVLLTLSKSGIVELIGKEWFFVRVHDAVQVCLRHVESLHQSPVIASDGTKPSLYERLIKQNGISAADLETGQRTIASRNGDSRLEPLLSNKFS T

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13550		SULTR4;1	sulfate transporter 4.1 (.1)		Lus10040319 [exp]	0	1
AT4G18210		ATPUP10	purine permease 10 (.1)		Lus10038492 [exp]	2.0	0.8595
AT3G23570			alpha/beta-Hydrolases superfam...		Lus10004436 [exp]	3.0	0.8723
AT4G10770		ATOPT7	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10028445 [exp]	3.7	0.8289
AT3G01650		RGLG1	RING domain ligase1 (.1)		Lus10022294 [exp]	8.5	0.8282
AT3G15780			unknown protein		Lus10011492 [exp]	8.9	0.8268
AT3G61850	DOF	DAG1, AtDof3,7	dof affecting germination 1, D...		Lus10012619 [exp]	15.3	0.8400
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Lus10026375 [exp]	18.0	0.7658
AT2G18680			unknown protein		Lus10015508 [exp]	19.0	0.8024
					Lus10000811 [exp]	28.3	0.7925
AT4G10030			alpha/beta-Hydrolases superfam...		Lus10006176 [exp]	34.8	0.7734

Compare expression of checked genes

Lus10040319 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.