Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28550 182 / 8e-53 AP2_ERF TOE1, RAP2.7 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) AT4G36920 166 / 2e-46 AP2_ERF FL1, FLO2, AP2 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) AT5G67180 159 / 2e-44 AP2_ERF TOE3 target of early activation tagged (EAT) 3 (.1) AT5G60120 160 / 2e-43 AP2_ERF TOE2 target of early activation tagged (EAT) 2 (.1), target of early activation tagged (EAT) 2 (.2) AT3G54990 141 / 1e-37 AP2_ERF SMZ SCHLAFMUTZE, Integrase-type DNA-binding superfamily protein (.1.2) AT2G39250 134 / 2e-35 AP2_ERF SNZ SCHNARCHZAPFEN, Integrase-type DNA-binding superfamily protein (.1) AT1G79700 93 / 6e-21 AP2_ERF Integrase-type DNA-binding superfamily protein (.1.2) AT1G16060 93 / 1e-20 AP2_ERF ADAP ARIA-interacting double AP2 domain protein (.1.2) AT1G72570 92 / 8e-20 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G17430 91 / 4e-19 AP2_ERF BBM BABY BOOM, Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023482 [exp] 675 / 0 AT2G28550 144 / 1e-38 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Lus10026477 [exp] 169 / 4e-48 AT4G36920 298 / 3e-98 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10023165 [exp] 171 / 5e-47 AT4G36920 302 / 2e-97 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10018124 [exp] 167 / 3e-46 AT2G28550 342 / 4e-113 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Lus10015055 [exp] 166 / 1e-45 AT2G28550 302 / 1e-97 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Lus10019905 [exp] 166 / 2e-45 AT2G28550 306 / 6e-99 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Lus10009374 [exp] 162 / 2e-44 AT4G36920 394 / 2e-134 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10041595 [exp] 160 / 4e-44 AT4G36920 370 / 2e-125 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10019331 [exp] 161 / 5e-44 AT4G36920 392 / 1e-133 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G216200 [exp] 234 / 3e-71 AT2G28550 263 / 9e-83 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Potri.008G045300 [exp] 203 / 2e-59 AT2G28550 292 / 1e-93 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Potri.006G132400 [exp] 171 / 2e-47 AT2G28550 307 / 2e-99 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Potri.016G084500 [exp] 168 / 1e-46 AT2G28550 306 / 6e-99 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Potri.007G046200 [exp] 168 / 4e-46 AT4G36920 361 / 2e-120 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Potri.005G140700 [exp] 165 / 4e-45 AT4G36920 355 / 1e-118 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Potri.002G114800 [exp] 96 / 1e-20 AT4G37750 459 / 5e-155 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Potri.003G185300 [exp] 93 / 1e-20 AT1G16060 291 / 5e-97 ARIA-interacting double AP2 domain protein (.1.2) Potri.001G018400 [exp] 93 / 6e-20 AT1G51190 639 / 0.0 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) Potri.005G148400 [exp] 93 / 6e-20 AT4G37750 399 / 7e-132 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10040365 pacid=23174094 polypeptide=Lus10040365 locus=Lus10040365.g ID=Lus10040365.BGIv1.0 annot-version=v1.0 ATGAGCAACACCAACGGTCACCGCCGATCCAATTCCTGTCTGGACCTCAACCTAGACATACTAACTCCTCAATACGACGCAGTTTCAACAATCACTCCTC CTCCCAGCTGGAAGAAGAAACTCAAATCATCATCAGGAGCTTTACTCATCATGGAGGCGCGTGTACCAGATCACGACGACGCCGACGACGATAACAATTC CGCCGAAACTACTTCCGACTCATCCTCCGTCATCATCACCGCCTCCCCCCCAGCTCCCTGCTTCGACTTCAGATTCGATATCTTGACGAAGGATCCTGAT CAAACGACGCCGTTTCCGGCAACCACCCGCCAGCTGTTCCCGGCGGAGATCGGCGGCGGCGGATCATCGGGACTGAAGAATTGCCAGCTGGCTGCTACTA TTAACAATCAGTGGCTGAAGTTGTCGTCCGAAGTAGACTCCTCGGCGGGCGGAGGCGGAGAACATAGACCGGCGCCAGCGCCGGCAAGGAAGAGTAGGCG TGGGCCCAGGTCTAGAAGCTCCCAGTACCGTGGGGTCACTTTCTACCGGCGAACCGGCCGTTGGGAGTCGCATATATGGGACTGTGGGAAGCAAGTTTAT CTAGGTGGATTCGACACTGCCCATGCTGCAGCCAGGGCATATGATCGAGCTGCGATTAAGTTCCGGGGAACGGATGCGGATCTGAACTTCAATTTAGCTG ATTACGAGGAAGATATGAAGCACATGAAGGATTTGAGTAAAGAAGGATTTGTGCACGTACTTCGGCAGCAGAACAAAGGGTTGTCAAGAGGGAACTCAAA GTACAAAGGACCAGGCGGCACCTTTCAGAAATGTGGCGGCTGGGAAGCTCGAATGGCCCATCATCTCCTTGTTCCCAACAAGGTTTATGATAAGGGGGCT AAAGAGTACAACATGAATGGAGTTGCAAGGTCGAGTTTGCAGCTACTTTATCCACTAGACCGCCACAGTCACGACCTGGATCTAAAGTTGGGAATTTCTA CTCCATCTCATGAATCAAAGAAGAATGCCATGGAATCAAGGGTAGTACCATATGTTGAGAAACTTGTAAATCACAACAAAGGTCATTTCGGGTCACAAAC ACTTAACGGCAGGCCAACTGTACTCCACAACTTCTCAACGTGGCCGCTTCAATCATCGAGCCTTGAGGGGAGCAACAGTAACATTTCGACGGCAGCGGCA AGAGGGTTCTCATGCTGGACACAGTCGGTGAATGTTGCGAAGAGCGATGATGTTGCGAACCGCGACACAAAATGTTCGTCGACACTGCCGATTGCAGCAT CATCAGGATTCCCTTCTACGGCTACTTATAGTCCCAAAACGCAGATATTTGACACTAATTACTCTTCAACGACTGTTCATACATTCCAACCCAACCAGTA TTTGTACTCTCAGAAGAGGGGACGCCAATAA
AA sequence Show only first row Show all	>Lus10040365 pacid=23174094 polypeptide=Lus10040365 locus=Lus10040365.g ID=Lus10040365.BGIv1.0 annot-version=v1.0 MSNTNGHRRSNSCLDLNLDILTPQYDAVSTITPPPSWKKKLKSSSGALLIMEARVPDHDDADDDNNSAETTSDSSSVIITASPPAPCFDFRFDILTKDPD QTTPFPATTRQLFPAEIGGGGSSGLKNCQLAATINNQWLKLSSEVDSSAGGGGEHRPAPAPARKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVY LGGFDTAHAAARAYDRAAIKFRGTDADLNFNLADYEEDMKHMKDLSKEGFVHVLRQQNKGLSRGNSKYKGPGGTFQKCGGWEARMAHHLLVPNKVYDKGA KEYNMNGVARSSLQLLYPLDRHSHDLDLKLGISTPSHESKKNAMESRVVPYVEKLVNHNKGHFGSQTLNGRPTVLHNFSTWPLQSSSLEGSNSNISTAAA RGFSCWTQSVNVAKSDDVANRDTKCSSTLPIAASSGFPSTATYSPKTQIFDTNYSSTTVHTFQPNQYLYSQKRGRQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28550	AP2_ERF	TOE1, RAP2.7	TARGET OF EARLY ACTIVATION TAG...		Lus10040365 [exp]	0	1
AT3G25910			Protein of unknown function (D...		Lus10043292 [exp]	1.0	0.9456
AT5G53160		RCAR3, PYL8	PYR1-like 8, regulatory compon...		Lus10001059 [exp]	1.4	0.9387
AT1G60420			DC1 domain-containing protein ...		Lus10013017 [exp]	4.5	0.9341
AT5G65530			Protein kinase superfamily pro...		Lus10025713 [exp]	8.1	0.9227
AT1G24440			RING/U-box superfamily protein...		Lus10036937 [exp]	10.1	0.9376
AT1G22940		THIE, TH-1, TH1	THIAMINEE, THIAMINE REQUIRING ...		Lus10001365 [exp]	14.8	0.8709
AT1G29280	WRKY	ATWRKY65, WRKY6...	WRKY DNA-binding protein 65 (....		Lus10015229 [exp]	15.0	0.8951
AT1G74100		SOT16, ATSOT16,...	CORONATINE INDUCED-7, ARABIDOP...		Lus10031621 [exp]	16.7	0.9243
AT5G10860		CBSX3	CBS domain containing protein ...		Lus10021675 [exp]	17.2	0.9232
AT3G01980			NAD(P)-binding Rossmann-fold s...		Lus10041545 [exp]	17.4	0.9100

Compare expression of checked genes

Lus10040365 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.