Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 176 / 4e-45 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G69550 173 / 7e-44 disease resistance protein (TIR-NBS-LRR class) (.1) AT1G27170 147 / 6e-36 transmembrane receptors;ATP binding (.1.2) AT5G17680 145 / 4e-35 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G27180 135 / 6e-32 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT4G19500 126 / 3e-29 nucleoside-triphosphatases;transmembrane receptors;nucleotide binding;ATP binding (.1.2) AT4G16890 124 / 2e-28 BAL, SNC1 SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1, BALL, disease resistance protein (TIR-NBS-LRR class), putative (.1) AT4G11170 123 / 2e-28 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G45260 122 / 3e-28 WRKY ATWRKY52, SLH1, RRS1 SENSITIVE TO LOW HUMIDITY 1, RESISTANT TO RALSTONIA SOLANACEARUM 1, ARABIDOPSIS THALIANA WRKY DOMAIN PROTEIN 52, Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT5G45060 120 / 1e-27 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023487 [exp] 1217 / 0 AT5G36930 284 / 4e-78 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10023272 [exp] 916 / 0 AT5G36930 423 / 4e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10035674 [exp] 623 / 0 AT5G36930 410 / 1e-121 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10038482 [exp] 609 / 0 AT1G69550 386 / 3e-113 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10042714 [exp] 576 / 0 AT5G36930 411 / 3e-124 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10037406 [exp] 546 / 1e-177 AT5G36930 395 / 5e-116 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10026011 [exp] 543 / 1e-176 AT1G27170 423 / 5e-127 transmembrane receptors;ATP binding (.1.2) Lus10001375 [exp] 541 / 2e-173 AT5G36930 464 / 3e-141 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10020238 [exp] 525 / 6e-170 AT1G69550 391 / 7e-117 disease resistance protein (TIR-NBS-LRR class) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G004599 [exp] 206 / 1e-54 AT5G36930 627 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.012G053200 [exp] 205 / 3e-54 AT1G27170 1187 / 0.0 transmembrane receptors;ATP binding (.1.2) Potri.019G052000 [exp] 186 / 5e-48 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G016425 [exp] 185 / 6e-48 AT5G36930 650 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T005501 [exp] 185 / 8e-48 AT5G36930 612 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.003G014200 [exp] 185 / 9e-48 AT5G36930 673 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002066 [exp] 183 / 3e-47 AT5G36930 631 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G003942 [exp] 181 / 8e-47 AT5G36930 591 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.001G066500 [exp] 180 / 8e-47 AT5G36930 462 / 2e-146 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G002500 [exp] 182 / 9e-47 AT5G17680 587 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10040368 pacid=23173892 polypeptide=Lus10040368 locus=Lus10040368.g ID=Lus10040368.BGIv1.0 annot-version=v1.0 ATGAGCGATGATCACGCCCTTCGACTTTTCAGCAAACATGCGTTTGGAACGGATGATCCTCCGAAAGATGATGCAAAGGCAGCTCTATCTATGGAGTTTG TAAAAGTTGCAGCGGGGCTTCCTCTGGCTCTTAAGGTTATAGGGTCGCTTTTGTTTCGTAGAGAGAATGAATTCTGGGCAGCAAAGTTGGTTGAGCTTAA AGACATACCTCCCACCAAGTTACAAGAAAGGTTAAAAATAAGTTACAACGAGCTAAGTCATAATGAAAAACAAATCTTTCTTGATATTGCTTGTTGTTTT ATCGGTGTAAAGAAGAACTTCCCTTTCTATATGTGGAGTGATTGCAAGCTTTATCCTGAAAGTGGGATCAAAACTCTCATGTTAAGATCGTTGGTGAAAC TTAACGAGGAGAATGAGTTCTGGATGCATGATCACATCAGAGATCTCGGTAGAACAATTGTTCGAGATGAAGATATTCGACGCCCTTGGAAGCGCAGCAG AATATGGTCTAATGAAGATGCCCTGGAAATTTTGAAAAGCCAGGAGGGAAGCGACTTGGTTGAAGTTCTTAGAGTTAACATGAGAGAAGAAGAACTTGAG CTCACAAATGAACAATTTAAGAAACTTTCAGGGTTAAGGTATCTCGAAGTATGTTACGGAAACCTAACTGGAGATTTGACAGGAGTTCTCCCAAACATAC GTTGGCTCCGGCTGCATGATTGTAGTTCAATCCCAAATGATGTCAACATGAAGAAGTTGGTTGTTCTTGACATGCAGAATTGCCCTGTGAAAGATAACTG GAGAGGATGGTGTGGAATTAAGGTCGTACACAAGCTGAAAGCTATAAATCTGCAACTTTGCGGGGAATTAAGATCAGCTCCGGACTTGTCCCGGTGCAGA GACCTGGAGTTGATAAATCTCTGGAGCTGTTCAGCGATGAGCGGGGAGCTGCACATTGGCAAATTCAAGAATCTGAAACTGTTGACATTCTCCGGGAGTA AAATAACCAAGTTAACAGGTAACAACATTGGAATGCTTAAAGCTCTCAAATACATGGATGCAGGGGATCTGAGAGAGTTTCCTTCGGATATTGGCAAACT ATCGTCTCTCGAAGTCTTGAACTTGCCACCATTTGGTTCACAGTTGACTGAACTAGCAGTCCTGCCCACAAGTTTAAAGCAGCTCTCCCTTTCGTCCTCG CGGGTTCCCAACCTTTTGGAGCTCAAGAACTTGGAGGAGCTATACTTCAACAATTGCCACAAGCTGCAACCTCTCGGAGGTATGTGGAAGCTATCCAAGT TGAAATGTTTGCAGCTTATACAATTGTCTTGCTGTGACAGCCTACTTGAGGACGAGAACGAGGACGAGGAAGGGAATTGTCTTCCTTCATCTCTAAACTG CCTCAATATATCTGGTAGTGAGCCATTGGAGAGACTGCCGAATTTGGCGAATCTGAATAACCTGATGGAACTGACACTGACGCAGTTTAAGGTGCACGAG ATTCAAGGTTTGGGAGAGCTGAGAATGCTGGAATCTTTGGTGCTATCATCTGCTGAGAATCTAACCAATCTTGATGGCCTTGAAAGTCTTTCGCATTTGA AGAAACTCAGCCTTGCATACTGCTGTGTACTGGAAAACTTGCCTAATTTGGCCAATCTGGCCAAGTTACACGAAGTAATGTTTGATTCATGTCTGCTTCT ATCGGACATTCGAGGGCTAGGGGAACTAACAGAGTTCTATCTATCTGATCTCTGTATCTGTAATTGTCCCAGTTTAGACCACAATCTTGATAAGGACCTT GGTCTATCAATGGAACCGTTGGTTCCTTCTTTGTGGAAGCTAGCCACATTGAGAACCCTATTGCTATATCGTTACGATCACCATCTCTCATCTGGAGAAC AATTCCTCGATGCCTCCGGTTTACGTAACATGGAGGAGATGAGAATCATCGGGTACAAACGGTTGAGAAAGGTGTATGGGGTTCGAAACTTGAAGTCTTT GGCATCCCTAGTTCTGTCAGATTGCACCTCTATTACAGAGTTGCCCGATGGCCTCGAGAATCTACACAGTTTGAACATTGATGGATGCACGCAATTGGTC GAGATTGAAGGACTTTGTGGACATCGATTGAAGTCGTTGGACATGTCAGGCTGCATATGGGTCACGAAGTTCCCGGACCACCTATTGAAACTAGAGACCT TAGTTATTGACGATTGCACACAGTTTAGTGAGGTGACGAGCCTGGAGAGGTTCGTGGCATTGAGATCACTCAGCATGAGGAATTGCACATCGGTTACCGA GTTGCCTGACTTGTCTGCTCTGGTGGATCTCAACATATTGCAGATCGGTGGATGCACAGGTTTGACTGAGCTTACAGGGATTGAAGGGTTGGAGTCGCTG GAACAGCTGAGTATGGTGGGCTGCTGTTTGGTTAAGGAGTTGCCGGATTTATCCAGTCTGGAGAACATCAGGTTATTGGATATTAGTGAATGCAAGCTGT TGAATGAGGTTGTTGGGATCGAAAATTCGGAGTTACTGGAATCCCTGGCAATGAGGAACTGCACATCGGTGAAGAAGTTGTCCGATCTGTCTGGCTGTAA GAAGCTGCGCGAGCTGGATATTACGGGATGTATTCAGTTGGATCAAGTTTGCGTAATTGATAAGTCGAAGAAGCGATTTGTAACGGTCAGACGATAA
AA sequence Show only first row Show all	>Lus10040368 pacid=23173892 polypeptide=Lus10040368 locus=Lus10040368.g ID=Lus10040368.BGIv1.0 annot-version=v1.0 MSDDHALRLFSKHAFGTDDPPKDDAKAALSMEFVKVAAGLPLALKVIGSLLFRRENEFWAAKLVELKDIPPTKLQERLKISYNELSHNEKQIFLDIACCF IGVKKNFPFYMWSDCKLYPESGIKTLMLRSLVKLNEENEFWMHDHIRDLGRTIVRDEDIRRPWKRSRIWSNEDALEILKSQEGSDLVEVLRVNMREEELE LTNEQFKKLSGLRYLEVCYGNLTGDLTGVLPNIRWLRLHDCSSIPNDVNMKKLVVLDMQNCPVKDNWRGWCGIKVVHKLKAINLQLCGELRSAPDLSRCR DLELINLWSCSAMSGELHIGKFKNLKLLTFSGSKITKLTGNNIGMLKALKYMDAGDLREFPSDIGKLSSLEVLNLPPFGSQLTELAVLPTSLKQLSLSSS RVPNLLELKNLEELYFNNCHKLQPLGGMWKLSKLKCLQLIQLSCCDSLLEDENEDEEGNCLPSSLNCLNISGSEPLERLPNLANLNNLMELTLTQFKVHE IQGLGELRMLESLVLSSAENLTNLDGLESLSHLKKLSLAYCCVLENLPNLANLAKLHEVMFDSCLLLSDIRGLGELTEFYLSDLCICNCPSLDHNLDKDL GLSMEPLVPSLWKLATLRTLLLYRYDHHLSSGEQFLDASGLRNMEEMRIIGYKRLRKVYGVRNLKSLASLVLSDCTSITELPDGLENLHSLNIDGCTQLV EIEGLCGHRLKSLDMSGCIWVTKFPDHLLKLETLVIDDCTQFSEVTSLERFVALRSLSMRNCTSVTELPDLSALVDLNILQIGGCTGLTELTGIEGLESL EQLSMVGCCLVKELPDLSSLENIRLLDISECKLLNEVVGIENSELLESLAMRNCTSVKKLSDLSGCKKLRELDITGCIQLDQVCVIDKSKKRFVTVRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69550			disease resistance protein (TI...		Lus10040368 [exp]	0	1
AT3G04480			endoribonucleases (.1)		Lus10027962 [exp]	7.7	0.7835
AT5G19950			Domain of unknown function (DU...		Lus10043254 [exp]	10.1	0.7481
AT3G13170		ATSPO11-1	Spo11/DNA topoisomerase VI, su...		Lus10016612 [exp]	12.3	0.7592
AT5G66130		ATRAD17	RADIATION SENSITIVE 17 (.1)		Lus10028430 [exp]	19.1	0.7697
AT2G33435			RNA-binding (RRM/RBD/RNP motif...		Lus10023746 [exp]	20.0	0.7735
AT5G17370			Transducin/WD40 repeat-like su...		Lus10001227 [exp]	36.5	0.7455
AT3G07180			GPI transamidase component PIG...		Lus10022778 [exp]	41.9	0.7061
AT2G04220			Plant protein of unknown funct...		Lus10039183 [exp]	66.0	0.7122
AT5G06780		AtEML2, ACK4	EMSY-like 2, Emsy N Terminus (...		Lus10021038 [exp]	70.2	0.7175
AT3G47570			Leucine-rich repeat protein ki...		Lus10037840 [exp]	71.4	0.6949

Compare expression of checked genes

Lus10040368 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.