Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52250 387 / 3e-110 MYB Duplicated homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023504 [exp] 2899 / 0 AT3G52250 577 / 3e-177 Duplicated homeodomain-like superfamily protein (.1) Lus10041413 [exp] 1230 / 0 AT3G52250 545 / 2e-166 Duplicated homeodomain-like superfamily protein (.1) Lus10036515 [exp] 1229 / 0 AT3G52250 541 / 2e-164 Duplicated homeodomain-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G220000 [exp] 1169 / 0 AT3G52250 645 / 0.0 Duplicated homeodomain-like superfamily protein (.1) Potri.008G041900 [exp] 1107 / 0 AT3G52250 645 / 0.0 Duplicated homeodomain-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10040386 pacid=23174116 polypeptide=Lus10040386 locus=Lus10040386.g ID=Lus10040386.BGIv1.0 annot-version=v1.0 ATGCCGGCGGAGCCATTTTCTTTGGACCGGAAGAAGCACGAGAGGTCCGAGTCTTCCTCCTCCTCTTTTGGTTCTGCACCGCGATGGAGGGAGTGGTCAT CGGGTCATTATGGATCATACCGCGAGCTTGGCCCTCGATGGGCAGGAGGATCCGGCGAGCTCCGCAGACCTTCCGGTCATGGCAAGCAGGGCTGGCACCT TTCCCCTGAACAATCTGGTTATGGATATACCCGCTCCAGGTCTAGCGACAGGATGCAGGAAGATGAGAATGGAAGACTACCCTTTTCACGTGTAAATGGA AAATATGGTAGGACTGGTAGAGATAACAGGGGGCTTTCTGGCCTGAGAGACTGGAAAAATCATTCATGGGAGATGAACGATGGATCTCCTTTTGGACCTG GAAGATCTCATGATGTGAGTAATGATCAGAGGTCAGTTGATGATATGCTAACACACCCTCCTTCTCACCCTCCTAATTCTGACTTTGTGAACACATGGAA TCAGCTTCAGTTGAAAGAGCATCAAGACCATAATAATGAGGAGGGTACTAATGTTTTGACTTCGGGCCAAAGGGGTGAGAAAGCGAGCTCACTGGATTGG AAGCCTCTTAAATGGGCTCGGGGAGGAAACTTGTCTTCTAGGGGCTCTGGATTTAGGTACTCAAGTAGTTCGAAGAGTATTGGGGCTGTGGATTCTAATG GAGGGAAGAATGAGGTGCTGCCGCTAGACAATGTAACTTCAATTCAGTCTCCTTCAAAAGATGCTGCTGCTACTGATGGTAATTCTGCAGCACCATCTGA CGAGATAACCTCTAGGAAGAAGCCACGCCTTACATGGGGCCAGGGCCTGGCAAAATTTGAGAAGAAGAGAGGGGAAGGCCCTGAGATTAGTGGTACTAGA GATGATAGACCCTTGTTTGCGATGAATGCTGACCCTGTTCACTCTCAAAGCTCAAGCCTGGTTGACAGAAGCCCTAGACTGATGGGTTTTCCAGATTCTC CTGCAACTCCTTCGTCTGTTGCTTGTAGTTCCTCACCAGGAACTGAAGAGAAATTTTCGGTGAAGGCTTTAGGTATTGATAATGATGCAAGTAATCTATA CGGTTCTCCTTATGCCAACTCTCAAAGTCATCTTGAGGAGTTATCTCTTGATATAGAAAAGTTGGATTCGAGCCTAATCACTAGTCTGGGGTCCTCACTC ACTGAGATGATACAGTCGGACAATTTATGCTCTGCGGACTCGAGTTCTGTGAAGTTAGCTGGAATGAGCAAATTACTTGTTTGGAAAGGTGATGTCTTGA AGGCATTGGAAACAGCAGAGTCTGAGATTGATATGCTTGAAAATGAACTAAAGTTGCTGAAGTCTGATTCTAAAAGCAAGCTTTCCTGTCCATCACCATC CAGTTCCTTGTTAAACAGGGGTTCTATTGTTTGCAATGAACTTAAAAATGTATCTGGCAATGCTCTCTGCCGTCCTTCTACGCTGAAAGTTGTATCCAGT AGGGATGAGATTCATAATTCCGATGATGCTTTTGATGGTGATGGTGGTGCCAAGGATGATGCTAATAGTCCTGGGACTGCTACAACAAAGTTTGTTGAAC TTGTATCATCAACAAGGATTTCTTCTGAGATGTTAATATGTGATGAACAATCTGGTTTGGGTCCTGCCAAACATCCAAATCTGGACTTGAAAGTTGCAGT GCCTGTGGTGCAAGAGAAAGACTTTGCCGTTTCAGCTTCCGAGGGTGACTTTCTTGTACATTGCAACACTAGTAAACCTGTATATGCTAGTAGGAGCTCT GTGGCAAATGGGGAAGATTATCTATGTACTGCTATATTGTCATCAAACAAGGTATCTGCATCTGCAGCGGCTGAAGAGTTCAATAGGTTATTGTCCAGTG ATCCCTGCTCAGTTGATTGTTCAAGAGTTGCCAATATATTGTCGTTGCAATCTGATGCTTTGATTAAGCAAAATTTTTTGATGAGGAAACGACCAGTAAA GTTCAAGGAGAAAATGGTGGCCTTGAAGTTCAAAGCCTTTCAACATTTGTGGAGGGAGGATAAGCGGTCACTTTCTGTGAAAAAATCCAAGTCAAAGTTC CAGAAGAAGTTGGAGTCAAGCTCGCGACCTATATCTAATATGGATAAAAAGCATCGATCCTCATCTCGCTTGCGGGTCTGTTTGTCTGGAAGTTTGGGTT TGGTTCCTACGCCAGATGTTCTGAAATTTACAAGGAAGTTGCTTGCAGATTGCAATGCCAAAGTTTACAGGGATAAATTGAAAATGCCAGCACAGATTCT GGATGAGAAGGAGAAAGTAGCTTCACGGTTTATATCTCGCAACGGATTAGTTGAAGATCCCTGTGCTGTTGAAAGGGAAAGGGCTATGATTAACCTCTGG ACTTTAGAAGAGCGACAAATTTTTATTGATAAGCTAGCCTCTTGTGGTAAAGATTTCAAGAAAATTGCGTCTTTTCTTGAACACAAGACAACTGCAGACT GTGTTGAATTTTACTACAAAAATCACAAGTCTGAATCTTTTGGGAAAATGAAGAAAAACAAGCAATCTAAGTCTTCTGCGAACTACTTGATGTCATCAAA TAAGAAGTGGAATCGGGAGATGAATGCAGCCCCACTTGAAATATTGAGTGCTGGCTCAGTGCTGGCTGCTGATTCTGGGCGAAGTATGGGAAGCAGGAAG ATGCAAACCGGTAGAATTTTGATAAGAGGCCCAGGTAATTGCACAATCATGGAGGATGGTGACTGTAATTCAGACAGATCAAACAATTATGATATGATTG TCAGTGAAAGAGAAACAGCTGCTGCTGACGTTCTTGCTGGTATTAGTGGTTCTGTAAGTTCTTGTATTACTACAGCAGATCGTGGGGAGGGATTCCATGA ATTCAAGTCCCAAAAGAGAGCTACTGTGGACAGATGCCTATCCTTGTCTGATGCTACCCAGAGTGTAGATGAAGAGACCTGCTCTGATAATAGTTGTGGA GAAATGGATCCTGCTGATTGGACAGACAAGGAGAAATCAGCTTTTGTTCAGGCTGTTTCTTTGTATGGAAAGAATTTTGCACTCATCTCTCACTGTGTCC AGACAAGATCTCAGGATCAGTGCAAAGTGTTTTTTAGCAAAACAAGGAAATGTCTAGCGCTGGATCAGATCCGGTCTTGTGAAGATGCAGTAGGTCCGTC AGTAATTGAGGATGCTAATGGAGGTGGTAGTGACATGGAACAGGGTAACGTCATGGACAAAGGCTTAAACAAACTCTCTTCTGAGGTGGACTGTGATCTG CCCTACTCAGATATGTTCACTGCTGGGGTTTCAAACCTTGAAAGTAACCTGCATATATCTGAGGATAAAGATGTTGCTGGATCAATAGAGGGGGCAGGTT TGCTGAATGCAAACGCTCTGGTTTCTGATTGTCCAAAGGAGCATCTGCTGCAGTCAAGTCCACTGGCTGATGGTGAAGTCATTAATGGGTCGGAAAGTTC TATCAAAGGCCAGAAAGTCCAAATAGAACCTGGTGTTATCGCAAGTGAAAAAGATGGTGGAGCAAGCGATGGATTTGCCAATTCTGGCATTGCTGAAGAT GTAGTCGACTCTGCTCCATCCAACCTAGTTTCCTCCTTCGAGGATGAAGCTAGGAAAGAAGTCCATGCTAGTTTAGGTAACCAAGAAAATTCATTTCCCC ATCCCAAGGCTAGTAGCCAAAGTTGTTTGATACAAGATTTGAATACAACCAAAGAAGTCCCACATCCCCCCTGGGACATGGGCTCTTCAAATGACAGTCA TGGCGTTGAAAATATTAATCAGAGACAAGTTGAGGTGAATTCTGTGGAGACTAGTGTAGCAATGTCATTGCCGATGGAAAGTAATATGGCCAGCAGTGAT TCCGTGATACAGCACTCTGCTGCTGTGCATGATTCAGGTGGTATCTCAGCCAGTGTTGATGTCCATCAGAATGGTGATAGGGATGATGCAAAGTTCTGTG AAAATGGTGATGTGCTGCCTTTGCTGAGCGTTGGGGAATCTTCTCAGATCATTACCAAGCAGTTTGTGGCCGAGGGACCCCATCTCCAGAAGCCGAGCAA TTCGGAAGGTCAATGCTCGGCAACTGAGCTTTCTCTTCTGAGCCAACACTCTGAACAAGCAAATAGACAGTCTCACAGCTTTTCAGACATGGAAAAACCA TGTAGGAATGGTGATGTAAAGCTCTTTGGCAAAATACTCAGTAACACTGCATCATCATCACACAAGCCTAATACTGAATATGGGAAGGATGGAAAAAGCA GCCATCCTGTCAAGACGGGCAGCCCGGCGACCTTGAACTTCACTGGCCATCCCAGTGCAGATGGCAATGCCACTCTGCTGAGTTTTGATCCGAACAGTTG TCTGGGGTCGGAGAATCTTCTTCCTCAAAGGAGTTATGGGTTCTGGGATGGGAGGAGAATACGGATGGGGGTTTCATCGTTGCCCGATTCAGCCATCTTA CTGGCTAAATATCCTGATGCATTTAGCAACTACCAGGGACACCCACCCAAGATTCTTACAAACAGCGAACGAAGTATAAATGGCCTACCGAAATTCCCAT CAAGGGATGCAAGTAGCAGCAGCACTGCCCTGCTGGATCTTCAGAGGTACATAACTCAGGATGCCAACAAATTTGAGCCATTCGCTCTTGAACGGCAGGA AGTACTTGATTTACAGGCACGAAAAGGGTTTGATTCAATTCCTAGTTTGCAGCAGCAGGGGAGGGCAATGGGAATGAGTATTGCAGGTAGAGGAGGTGTC CTTATCGGCGGGCCATGCCAAGCCATTTCGGATCCTGTTGCGGCAATCAAGATGCATTTCGCAAAGACCGATCGAGTTGGGGTCCAAAGTGGCACGGTCA ACCCGAGACAGGATGAGCCTTGGAGAGGACAGGGGGATGCGAGGAGATAG
AA sequence Show only first row Show all	>Lus10040386 pacid=23174116 polypeptide=Lus10040386 locus=Lus10040386.g ID=Lus10040386.BGIv1.0 annot-version=v1.0 MPAEPFSLDRKKHERSESSSSSFGSAPRWREWSSGHYGSYRELGPRWAGGSGELRRPSGHGKQGWHLSPEQSGYGYTRSRSSDRMQEDENGRLPFSRVNG KYGRTGRDNRGLSGLRDWKNHSWEMNDGSPFGPGRSHDVSNDQRSVDDMLTHPPSHPPNSDFVNTWNQLQLKEHQDHNNEEGTNVLTSGQRGEKASSLDW KPLKWARGGNLSSRGSGFRYSSSSKSIGAVDSNGGKNEVLPLDNVTSIQSPSKDAAATDGNSAAPSDEITSRKKPRLTWGQGLAKFEKKRGEGPEISGTR DDRPLFAMNADPVHSQSSSLVDRSPRLMGFPDSPATPSSVACSSSPGTEEKFSVKALGIDNDASNLYGSPYANSQSHLEELSLDIEKLDSSLITSLGSSL TEMIQSDNLCSADSSSVKLAGMSKLLVWKGDVLKALETAESEIDMLENELKLLKSDSKSKLSCPSPSSSLLNRGSIVCNELKNVSGNALCRPSTLKVVSS RDEIHNSDDAFDGDGGAKDDANSPGTATTKFVELVSSTRISSEMLICDEQSGLGPAKHPNLDLKVAVPVVQEKDFAVSASEGDFLVHCNTSKPVYASRSS VANGEDYLCTAILSSNKVSASAAAEEFNRLLSSDPCSVDCSRVANILSLQSDALIKQNFLMRKRPVKFKEKMVALKFKAFQHLWREDKRSLSVKKSKSKF QKKLESSSRPISNMDKKHRSSSRLRVCLSGSLGLVPTPDVLKFTRKLLADCNAKVYRDKLKMPAQILDEKEKVASRFISRNGLVEDPCAVERERAMINLW TLEERQIFIDKLASCGKDFKKIASFLEHKTTADCVEFYYKNHKSESFGKMKKNKQSKSSANYLMSSNKKWNREMNAAPLEILSAGSVLAADSGRSMGSRK MQTGRILIRGPGNCTIMEDGDCNSDRSNNYDMIVSERETAAADVLAGISGSVSSCITTADRGEGFHEFKSQKRATVDRCLSLSDATQSVDEETCSDNSCG EMDPADWTDKEKSAFVQAVSLYGKNFALISHCVQTRSQDQCKVFFSKTRKCLALDQIRSCEDAVGPSVIEDANGGGSDMEQGNVMDKGLNKLSSEVDCDL PYSDMFTAGVSNLESNLHISEDKDVAGSIEGAGLLNANALVSDCPKEHLLQSSPLADGEVINGSESSIKGQKVQIEPGVIASEKDGGASDGFANSGIAED VVDSAPSNLVSSFEDEARKEVHASLGNQENSFPHPKASSQSCLIQDLNTTKEVPHPPWDMGSSNDSHGVENINQRQVEVNSVETSVAMSLPMESNMASSD SVIQHSAAVHDSGGISASVDVHQNGDRDDAKFCENGDVLPLLSVGESSQIITKQFVAEGPHLQKPSNSEGQCSATELSLLSQHSEQANRQSHSFSDMEKP CRNGDVKLFGKILSNTASSSHKPNTEYGKDGKSSHPVKTGSPATLNFTGHPSADGNATLLSFDPNSCLGSENLLPQRSYGFWDGRRIRMGVSSLPDSAIL LAKYPDAFSNYQGHPPKILTNSERSINGLPKFPSRDASSSSTALLDLQRYITQDANKFEPFALERQEVLDLQARKGFDSIPSLQQQGRAMGMSIAGRGGV LIGGPCQAISDPVAAIKMHFAKTDRVGVQSGTVNPRQDEPWRGQGDARR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52250	MYB		Duplicated homeodomain-like su...		Lus10040386 [exp]	0	1
AT3G52250	MYB		Duplicated homeodomain-like su...		Lus10023504 [exp]	1.0	0.9873
AT4G24200			Transcription elongation facto...		Lus10028515 [exp]	4.0	0.9270
AT3G53090		UPL7	ubiquitin-protein ligase 7 (.1...		Lus10008636 [exp]	4.7	0.9501
AT3G11540		SPY	SPINDLY, Tetratricopeptide rep...		Lus10021336 [exp]	5.5	0.9298
AT4G16310		LDL3	LSD1-like 3 (.1)		Lus10033928 [exp]	5.5	0.9470
AT1G76320	FAR1_related	FRS4	FAR1-related sequence 4 (.1.2)		Lus10031825 [exp]	5.6	0.8957
AT4G16310		LDL3	LSD1-like 3 (.1)		Lus10024311 [exp]	8.2	0.9349
AT5G11530		EMF1	embryonic flower 1 (EMF1) (.1)		Lus10011692 [exp]	8.4	0.9241
AT4G34430		ATSWI3D, CHB3	SWITCH/SUCROSE NONFERMENTING 3...		Lus10023583 [exp]	9.5	0.9174
AT5G36210			alpha/beta-Hydrolases superfam...		Lus10021758 [exp]	9.6	0.8816

Compare expression of checked genes

Lus10040386 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.