Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48450 429 / 1e-143 SKS3 SKU5 similar 3 (.1) AT4G12420 419 / 2e-140 SKU5 Cupredoxin superfamily protein (.1.2) AT1G21850 414 / 5e-139 SKS8 SKU5 similar 8 (.1) AT4G22010 411 / 8e-138 SKS4 SKU5 similar 4 (.1) AT5G51480 404 / 2e-134 SKS2 SKU5 similar 2 (.1) AT1G76160 402 / 2e-134 SKS5 SKU5 similar 5 (.1) AT1G21860 401 / 7e-134 SKS7 SKU5 similar 7 (.1) AT1G41830 394 / 2e-131 SKS6 SKU5 SIMILAR 6, SKU5-similar 6 (.1) AT4G25240 395 / 9e-131 SKS1 SKU5 similar 1 (.1) AT1G55570 392 / 2e-130 SKS12 SKU5 similar 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023539 [exp] 914 / 0 AT4G12420 496 / 4e-170 Cupredoxin superfamily protein (.1.2) Lus10037941 [exp] 630 / 0 AT4G12420 519 / 2e-179 Cupredoxin superfamily protein (.1.2) Lus10025860 [exp] 431 / 5e-145 AT5G48450 882 / 0.0 SKU5 similar 3 (.1) Lus10038239 [exp] 426 / 8e-143 AT5G48450 858 / 0.0 SKU5 similar 3 (.1) Lus10031143 [exp] 419 / 2e-140 AT4G25240 898 / 0.0 SKU5 similar 1 (.1) Lus10032241 [exp] 418 / 5e-140 AT4G12420 950 / 0.0 Cupredoxin superfamily protein (.1.2) Lus10028921 [exp] 417 / 1e-139 AT4G12420 975 / 0.0 Cupredoxin superfamily protein (.1.2) Lus10031722 [exp] 414 / 2e-138 AT4G25240 897 / 0.0 SKU5 similar 1 (.1) Lus10004339 [exp] 414 / 2e-138 AT4G12420 979 / 0.0 Cupredoxin superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G032200 [exp] 693 / 0 AT4G12420 472 / 2e-160 Cupredoxin superfamily protein (.1.2) Potri.008G032100 [exp] 646 / 0 AT5G48450 461 / 3e-156 SKU5 similar 3 (.1) Potri.002G021000 [exp] 437 / 9e-148 AT1G75790 670 / 0.0 SKU5 similar 18 (.1) Potri.014G177700 [exp] 431 / 7e-145 AT5G48450 885 / 0.0 SKU5 similar 3 (.1) Potri.003G112700 [exp] 429 / 5e-144 AT4G12420 932 / 0.0 Cupredoxin superfamily protein (.1.2) Potri.001G120300 [exp] 424 / 5e-142 AT4G12420 930 / 0.0 Cupredoxin superfamily protein (.1.2) Potri.002G227600 [exp] 419 / 6e-141 AT1G76160 794 / 0.0 SKU5 similar 5 (.1) Potri.012G126400 [exp] 420 / 1e-140 AT4G25240 883 / 0.0 SKU5 similar 1 (.1) Potri.004G010100 [exp] 416 / 2e-139 AT4G22010 844 / 0.0 SKU5 similar 4 (.1) Potri.014G154500 [exp] 414 / 6e-139 AT4G22010 780 / 0.0 SKU5 similar 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF00394 [flax] [poplar] Cu-oxidase Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07731 [flax] [poplar] Cu-oxidase_2 Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07732 [flax] [poplar] Cu-oxidase_3 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Lus10040424 pacid=23174171 polypeptide=Lus10040424 locus=Lus10040424.g ID=Lus10040424.BGIv1.0 annot-version=v1.0 ATGGTGTTCTCTGGAGCTGCTCTTCTTCTTCTCCTGATCAGTCCGGTACTGATAATTGTCAATGGCGAAGAGATCTTCCTCGAATGGCACTTGGCACTCG ACTCGAGCATCAGACCTGCCTCCGTCGACCAACCCGTAATTAAAATCAACGGTAAATTCCCAGGACCGCTGATCAATGCCACCACCAACGACAACATCCA CAACATTGACGAGCCGGTACTCTTCACCTGGAATGGGATTCAGCAGAGGCTAAACTCGTGGCAGGATGGGGTGTCAGGAACCAACTGTGGGATCCAGTCA GGGAAGAACTGGACATTTGTGTTCCAGGTGAAGGACCAGATCGGGTCCTTCTTCTACTTCCCATCGTTAAACTTCCAGAAGGCCGCCGGAGGGTTCGGTC CGATTCGTGTCAACAATCGAGTAGTTATCGCCGTTCCTTTCCCTCAACCTGACGACGATTTCGACCTTCTGGTCGGTGACTGGTATACTTCTAGCTACAA GGATGTCAGGAGGATGCTTAAGAACGGCACAACGGAATCGCATCAAAATATGACAATGCTTATGAATGGGAAAGGTTCATATCTTAATTCGTCTACGCAA GTACATGAATCTTTCACCGTCGCCAAAGGGAAGACTTACAGGTTCAGGGTGTCAAACGTGGGGATGTCGAGTAGTTTCAACTTCAGAATCCAAAACCACA AAATGTTAGTGGTCGAAACGGAAGGGTCTTACACGGATCAGACCTCGGTGGATTATTTAGATGTGCATGTAGGACAATCTTACTCGGTTCTCGTCACATC GGACCAAGCAGTGGCCGATTATTACATCGTGGCTTCCCCTAAGTTGGCCGACGAAAGCGGACTTTTGGGTGTCGGAGTCCTGCATTACGAAGGTTCATCA ACTAATGCTACAGGGCCAATCCCCGGTGGCCCTGACCCGTTTGATCTTCAGTTCTCTGTTGATCAGGCCAAGTCTGTCAAATGGAATTTAACGGCAGGGG CAGCGAGGCCGAACCCACAAGGGAGCTTCAACGTCTCAAACGTGACAATATCACAGACATTTATGCTAAGGGGATCAAAGTCGTCGTCACAACAAACCAA AAACGGTGTCGTTTACTACACAGTCAACGATGTATCCTACACAACTCCGGACACACCGTTGAAACTCGCCGATCTCTACAGCAATGGCTCCGGCGTATAC ACCCTCGACCAGTTCTCGACCAACTCTTCTTCCGACGGTGACAGTGATTTCCAACGGGGAGTTTTTGTTGCTGCCGGGGAACACAGAGGGTGGCTAGAGC TGGTGCTCATCAATACCCTTGTTGGTATAGATTCCTGGCACTTGGATGGCTATGGCCTCTTTGTTGTTGGGTACGGATTTGGGGATTGGACTCCATTGTC TCGTGCATCTTACAACATTTATGATCCGGTCGTTCGATCAACCGTTCAGGTGTACCCAAAAGGATGGACAGCAGTATATGCATACTTAGACAACCCAGGA ATGTGGAACCTAAGATCTCAAAAACTGAGGAACTGGTACTTGGGACAAGAGCTCTATCTAAGAGTCTATGATCCGGATCCAACCCTGCCAAAGAGTTTCC TCCTCCATCCAACCTTCTACTTTGTGGAATTTACAGCAATTCAACTCCGCCACCTACTCCTAGCTCCCCTAACTCAGCTCCTTCTCATGCATCTTTTCTT CACTTCTCATGGTTCCAAAGCTTTATGGTGA
AA sequence Show only first row Show all	>Lus10040424 pacid=23174171 polypeptide=Lus10040424 locus=Lus10040424.g ID=Lus10040424.BGIv1.0 annot-version=v1.0 MVFSGAALLLLLISPVLIIVNGEEIFLEWHLALDSSIRPASVDQPVIKINGKFPGPLINATTNDNIHNIDEPVLFTWNGIQQRLNSWQDGVSGTNCGIQS GKNWTFVFQVKDQIGSFFYFPSLNFQKAAGGFGPIRVNNRVVIAVPFPQPDDDFDLLVGDWYTSSYKDVRRMLKNGTTESHQNMTMLMNGKGSYLNSSTQ VHESFTVAKGKTYRFRVSNVGMSSSFNFRIQNHKMLVVETEGSYTDQTSVDYLDVHVGQSYSVLVTSDQAVADYYIVASPKLADESGLLGVGVLHYEGSS TNATGPIPGGPDPFDLQFSVDQAKSVKWNLTAGAARPNPQGSFNVSNVTISQTFMLRGSKSSSQQTKNGVVYYTVNDVSYTTPDTPLKLADLYSNGSGVY TLDQFSTNSSSDGDSDFQRGVFVAAGEHRGWLELVLINTLVGIDSWHLDGYGLFVVGYGFGDWTPLSRASYNIYDPVVRSTVQVYPKGWTAVYAYLDNPG MWNLRSQKLRNWYLGQELYLRVYDPDPTLPKSFLLHPTFYFVEFTAIQLRHLLLAPLTQLLLMHLFFTSHGSKALW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48450		SKS3	SKU5 similar 3 (.1)		Lus10040424 [exp]	0	1
AT5G47670	CCAAT	NF-YB6, L1L	"nuclear factor Y, subunit B6"...		Lus10028845 [exp]	1.0	0.7952
AT5G59540			2-oxoglutarate (2OG) and Fe(II...		Lus10013315 [exp]	2.0	0.7729
AT2G48020			Major facilitator superfamily ...		Lus10042676 [exp]	3.5	0.7492
					Lus10020530 [exp]	3.9	0.7294
AT4G10120		ATSPS4F	Sucrose-phosphate synthase fam...		Lus10006183 [exp]	6.9	0.7327
					Lus10027667 [exp]	16.1	0.7014
					Lus10000273 [exp]	17.2	0.7014
AT1G17930			Aminotransferase-like, plant m...		Lus10001981 [exp]	18.2	0.7014
AT1G04670			unknown protein		Lus10002298 [exp]	19.2	0.7014
AT4G18340			Glycosyl hydrolase superfamily...		Lus10031034 [exp]	20.2	0.7014

Compare expression of checked genes

Lus10040424 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.