Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39160 153 / 2e-39 MYB Homeodomain-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023544 [exp] 429 / 6e-146 AT4G39160 74 / 6e-14 Homeodomain-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G019600 [exp] 194 / 3e-52 AT4G39160 166 / 9e-43 Homeodomain-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10040429 pacid=23173992 polypeptide=Lus10040429 locus=Lus10040429.g ID=Lus10040429.BGIv1.0 annot-version=v1.0 ATGGATTCTGAGTTGGATCCTTTCATAGACGAGTTCGACGAGCCGGCTGCTCCCCGCGCTAAGCCGGCGGTGAAGTTCCAACCGAAGGCTCGGCCTAGGA AGGGCAAGGCTACTTCCTCCGCCGCCGCCGCGCCTCCAGTTTTTGCACCACCACCACCACCACTTCCTCCTGCCGATATTACTGTCAGTGCTGACGTATT TCTGGAAACGGATGCTGTCCACGATCTGGTAACTCAGCCCACAGGTGATTCGATTCGCTCTGCAAATGAAGAGGTTTTGGTACCCGCTTCTATACAAGAG TCTGTTGTTTTCTCAGCATTCGGAGGCGAGACGGAGGCCAAAGATCCAGTAGCGAGTGAGACGGTGGATGGACATGTTGATAGTGATAGGCTGCAATCAG AGGACTTGAGAGAAAGGACAGATGTCGTGTCTGAGCCTGTTGTTGAATCAGGCACAGAGGAGAATCCTCAGAATGATAACGTCTTCCTTGATGATGTTGA GTCTCTTGTTCCACCAGAGAGTAGTTTTGTCGCTCCTTCAGAAGCCAGACATGAAAGTGAGGGCACAATGCCTGCAGCAGAAGAGGAATATGTTTATGAT CTATCGTCCTTGGGCTTCGACGATTTTGTTCCTTCAGCTACTGCTGCCTCTGAGCTCCCAATGAACTCAGAACAGACGGGTGATGAGCAAACATGTGTTT TGAACGAGGCAGGCAAAAATTCAAGGGAGGATGCTCCTGAAGTGGTGAAAAAGAATCGAGACAACAATGAAAAGACTCTGGAGAAGTCCAAGACTTCTTC ATTAGGTAGCGACGGGAGTGTCGGCAAGCTCTCGATGCAGTTGAGGAAGCAATCAGGTGGTTTAGCTCTCAACGAGTCTGATTCTGTGAGTGTTCACGAT GATAGCAGCTTCCTTTTTGAAGCACCTGAATGCCTTGGTACGAATGGAGACGATGATTATGAATATCGGATCGAGGATTCTGAGGATGATGGAAATGTTG ATGCTGGCGGGGCAAGCACTTCCAAGAAAAAGAAAGCTGCTAAAAGGTCAAAGAAATCAGCTTCCAGTGAAGAGAAGCCTGGTCGAAAGCGCAAGAAAGC CAGTGACACATCAGAACAGTCGGAGCAGAAGCAGCTGAAGAAGAAATTTTCCCATTCAACTCGCCGAAAGAAAAGATATCGAAATGATGAGTTGCTTAAG GTGCCCGAAGATGAAATAGAATTCCGGAGCTTGACCATGCGGGATATCATTTTTCTTGCTGAACACAAAGAACGGTTAGCTGCTAAAGATGCCAAAGCTT CTTTGCAAACTCCTTCGACTGATAAAAACACCGAGGAAGCCAACGATGAAGAGGATAACTCCGAGTCCGAGGAACCTGTAGACGTATATGAAACCCCTTT ATTCAACAGCCATTCTTTCATGAATAGGACGCCCACCATGCGATGGTCAAAACAGGATACTGATTTATTTTATGAGGGAATTCGACAGTTCGGATCCGAT CTGTCAATGGTACAACAACTGTTTCCGGAGAGGACTCGCCGACAAATCAAGAATAAATTCAAGACTGAAGAGCGCCGACATCCATTCTTACTTTCTGATG CTCTGCAAAATCCCAACAGTGATACTACGTATTTTGAAAAGGTGTATAATAAGCTGGCGCAAGCTGCAGCTGATGAAGGAAGAGAGCCTCTCGATCTTAC CGGAGAAAAAGAAGCAGATTTGAATCTGGAAACTAATGAGGAACCAGGAAAAAACTCGGAGCAGGACGAGCAGGTAACGGGTCAAGATCCTGGAGATAAC CCTGATGAAGCCCATAGTAATGAGAAGATCGAGGAGGAAGAAGAGGTCGAGGACGAGGATGATCTATTTAGCTCATATAAATGTGAATTCTGA
AA sequence Show only first row Show all	>Lus10040429 pacid=23173992 polypeptide=Lus10040429 locus=Lus10040429.g ID=Lus10040429.BGIv1.0 annot-version=v1.0 MDSELDPFIDEFDEPAAPRAKPAVKFQPKARPRKGKATSSAAAAPPVFAPPPPPLPPADITVSADVFLETDAVHDLVTQPTGDSIRSANEEVLVPASIQE SVVFSAFGGETEAKDPVASETVDGHVDSDRLQSEDLRERTDVVSEPVVESGTEENPQNDNVFLDDVESLVPPESSFVAPSEARHESEGTMPAAEEEYVYD LSSLGFDDFVPSATAASELPMNSEQTGDEQTCVLNEAGKNSREDAPEVVKKNRDNNEKTLEKSKTSSLGSDGSVGKLSMQLRKQSGGLALNESDSVSVHD DSSFLFEAPECLGTNGDDDYEYRIEDSEDDGNVDAGGASTSKKKKAAKRSKKSASSEEKPGRKRKKASDTSEQSEQKQLKKKFSHSTRRKKRYRNDELLK VPEDEIEFRSLTMRDIIFLAEHKERLAAKDAKASLQTPSTDKNTEEANDEEDNSESEEPVDVYETPLFNSHSFMNRTPTMRWSKQDTDLFYEGIRQFGSD LSMVQQLFPERTRRQIKNKFKTEERRHPFLLSDALQNPNSDTTYFEKVYNKLAQAAADEGREPLDLTGEKEADLNLETNEEPGKNSEQDEQVTGQDPGDN PDEAHSNEKIEEEEEVEDEDDLFSSYKCEF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39160	MYB		Homeodomain-like superfamily p...		Lus10040429 [exp]	0	1
AT5G15700			DNA/RNA polymerases superfamil...		Lus10005097 [exp]	2.4	0.8363
AT3G54670		ATSMC1, TTN8	TITAN8, STRUCTURAL MAINTENANCE...		Lus10022923 [exp]	8.8	0.8202
AT5G22010		ATRFC1	replication factor C 1, replic...		Lus10013372 [exp]	15.5	0.8219
AT1G48310		CHR18, CHA18	chromatin remodeling factor18 ...		Lus10039409 [exp]	21.9	0.7920
AT2G17410	ARID		ARID/BRIGHT DNA-binding domain...		Lus10022981 [exp]	21.9	0.8086
					Lus10026146 [exp]	23.4	0.8363
AT5G13480		FY	Transducin/WD40 repeat-like su...		Lus10020214 [exp]	26.5	0.8194
AT3G30300			O-fucosyltransferase family pr...		Lus10034356 [exp]	28.9	0.8143
AT3G53320			unknown protein		Lus10026478 [exp]	32.2	0.7795
AT1G28060			Pre-mRNA-splicing factor 3 (.1...		Lus10023464 [exp]	36.0	0.7440

Compare expression of checked genes

Lus10040429 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.