Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21650 115 / 6e-35 MYB RSM1, ATRL2, MEE3 RADIALIS-LIKE SANT/MYB 1, MATERNAL EFFECT EMBRYO ARREST 3, ARABIDOPSIS RAD-LIKE 2, Homeodomain-like superfamily protein (.1) AT4G39250 114 / 2e-34 MYB RSM2, ATRL1 RADIALIS-LIKE SANT/MYB 2, RAD-like 1 (.1) AT1G75250 106 / 3e-31 MYB RSM3, ATRL6 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) AT1G19510 90 / 8e-25 MYB RSM4, ATRL5 RADIALIS-LIKE SANT/MYB 4, RAD-like 5 (.1) AT5G58900 83 / 2e-20 MYB Homeodomain-like transcriptional regulator (.1) AT2G18328 78 / 2e-20 MYB ATRL4 RAD-like 4 (.1) AT2G38090 75 / 2e-17 MYB MYB-R Duplicated homeodomain-like superfamily protein (.1) AT4G36570 66 / 5e-16 MYB ATRL3 RAD-like 3 (.1) AT5G05790 69 / 2e-15 MYB Duplicated homeodomain-like superfamily protein (.1) AT3G11280 69 / 4e-15 MYB Duplicated homeodomain-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023568 [exp] 185 / 2e-62 AT4G39250 123 / 5e-38 RADIALIS-LIKE SANT/MYB 2, RAD-like 1 (.1) Lus10041752 [exp] 114 / 2e-34 AT1G75250 103 / 2e-30 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Lus10007152 [exp] 113 / 4e-34 AT1G75250 113 / 3e-34 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Lus10010831 [exp] 112 / 6e-34 AT1G75250 108 / 6e-32 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Lus10033212 [exp] 110 / 1e-32 AT1G75250 107 / 2e-31 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Lus10002538 [exp] 108 / 3e-32 AT1G75250 112 / 1e-33 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Lus10028306 [exp] 104 / 7e-31 AT1G75250 103 / 1e-30 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Lus10014301 [exp] 104 / 1e-30 AT1G75250 102 / 5e-30 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Lus10026009 [exp] 103 / 1e-30 AT1G75250 103 / 1e-30 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G035000 [exp] 117 / 7e-36 AT1G75250 122 / 5e-38 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Potri.004G155866 [exp] 115 / 5e-35 AT1G75250 113 / 5e-34 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Potri.009G116600 [exp] 114 / 7e-35 AT4G39250 120 / 4e-37 RADIALIS-LIKE SANT/MYB 2, RAD-like 1 (.1) Potri.004G155400 [exp] 113 / 3e-34 AT1G75250 124 / 4e-38 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Potri.009G117200 [exp] 111 / 2e-33 AT4G39250 109 / 1e-32 RADIALIS-LIKE SANT/MYB 2, RAD-like 1 (.1) Potri.005G122200 [exp] 110 / 3e-33 AT4G39250 112 / 3e-34 RADIALIS-LIKE SANT/MYB 2, RAD-like 1 (.1) Potri.005G228000 [exp] 105 / 4e-31 AT1G75250 115 / 5e-35 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Potri.007G023800 [exp] 103 / 2e-30 AT1G75250 116 / 2e-35 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Potri.002G260000 [exp] 99 / 9e-29 AT1G75250 108 / 3e-32 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Potri.007G025200 [exp] 89 / 1e-24 AT4G39250 99 / 1e-28 RADIALIS-LIKE SANT/MYB 2, RAD-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10040453 pacid=23173993 polypeptide=Lus10040453 locus=Lus10040453.g ID=Lus10040453.BGIv1.0 annot-version=v1.0 ATGGCAACAAGCTCAATGTCAGCAAGAGGATCAGGGGGGAGCTGGACAGCAAAGCAGAACAAGGCATTTGAGAAGGCACTGGCTGTGTACGACAAGGAAA CACCTGACAGGTGGTCTAATGTCGCCAAGGCTGTTGGTGGGAACAAGACCCCTGAGGATGTCAAGCTCCACTATGATCTCCTTGTTGAAGATGTCAAGTT CATCGAGTCCGGCCACGTCCCTTTCCCTAACTACACCACCACTTCCTCCCTCGTCTCCGATGAAGAAAAGAGGTATTCCTTCTTCCAACTTCATTAA
AA sequence Show only first row Show all	>Lus10040453 pacid=23173993 polypeptide=Lus10040453 locus=Lus10040453.g ID=Lus10040453.BGIv1.0 annot-version=v1.0 MATSSMSARGSGGSWTAKQNKAFEKALAVYDKETPDRWSNVAKAVGGNKTPEDVKLHYDLLVEDVKFIESGHVPFPNYTTTSSLVSDEEKRYSFFQLH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21650	MYB	RSM1, ATRL2, ME...	RADIALIS-LIKE SANT/MYB 1, MATE...		Lus10040453 [exp]	0	1
					Lus10001854 [exp]	7.8	0.9982
AT4G11410			NAD(P)-binding Rossmann-fold s...		Lus10032280 [exp]	8.9	0.9826
AT1G18720			Protein of unknown function (D...		Lus10001647 [exp]	11.1	0.9980
					Lus10027902 [exp]	11.7	0.9918
AT1G07410		ATRAB-A2B, AtRA...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10004687 [exp]	12.1	0.9891
					Lus10007403 [exp]	13.6	0.9980
AT5G02030	HD	PNY, BLR, BLH9,...	VAAMANA, REPLUMLESS, PENNYWISE...		Lus10004688 [exp]	14.1	0.9950
					Lus10015895 [exp]	14.9	0.9881
AT2G27990	HD	PNF, BLH8	POUND-FOOLISH, BEL1-like homeo...		Lus10040256 [exp]	15.6	0.9821
AT5G26330			Cupredoxin superfamily protein...		Lus10006680 [exp]	15.7	0.9980

Compare expression of checked genes

Lus10040453 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.