Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34430 603 / 0 ATSWI3D, CHB3 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) AT1G21700 209 / 6e-56 CHB4, ATSWI3C SWITCH/sucrose nonfermenting 3C (.1) AT2G33610 135 / 2e-33 CHB2, ATSWI3B CHROMATIN REMODELING COMPLEX SUBUNIT B, switch subunit 3 (.1) AT2G47620 103 / 8e-23 CHB1, ATSWI3A SWITCH/sucrose nonfermenting 3A (.1) AT3G07740 74 / 2e-13 HXA2, HXA02, HAC10, ATADA2A, ADA2A homolog of yeast ADA2 2A (.1.2.3.4) AT4G16420 72 / 8e-13 PRZ1, ADA2B PROPORZ1, homolog of yeast ADA2 2B (.1.2.3) AT2G46830 44 / 0.0009 MYB AtCCA1, CCA1 circadian clock associated 1 (.1.2) AT1G18330 43 / 0.0009 MYB RVE7, EPR1 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023583 [exp] 1703 / 0 AT4G34430 704 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) Lus10026334 [exp] 880 / 0 AT1G21700 556 / 0.0 SWITCH/sucrose nonfermenting 3C (.1) Lus10042329 [exp] 860 / 0 AT4G34430 652 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) Lus10029695 [exp] 171 / 6e-44 AT1G21700 666 / 0.0 SWITCH/sucrose nonfermenting 3C (.1) Lus10042734 [exp] 169 / 3e-43 AT1G21700 736 / 0.0 SWITCH/sucrose nonfermenting 3C (.1) Lus10016043 [exp] 157 / 2e-40 AT2G33610 429 / 4e-147 CHROMATIN REMODELING COMPLEX SUBUNIT B, switch subunit 3 (.1) Lus10025165 [exp] 147 / 2e-36 AT2G33610 422 / 3e-142 CHROMATIN REMODELING COMPLEX SUBUNIT B, switch subunit 3 (.1) Lus10032555 [exp] 140 / 1e-34 AT2G47620 371 / 3e-123 SWITCH/sucrose nonfermenting 3A (.1) Lus10043188 [exp] 140 / 2e-34 AT2G47620 382 / 4e-127 SWITCH/sucrose nonfermenting 3A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G114900 [exp] 808 / 0 AT4G34430 727 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) Potri.004G153300 [exp] 774 / 0 AT4G34430 711 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) Potri.002G080600 [exp] 196 / 7e-52 AT1G21700 679 / 0.0 SWITCH/sucrose nonfermenting 3C (.1) Potri.005G180800 [exp] 183 / 1e-47 AT1G21700 692 / 0.0 SWITCH/sucrose nonfermenting 3C (.1) Potri.015G100400 [exp] 143 / 2e-35 AT2G47620 395 / 7e-132 SWITCH/sucrose nonfermenting 3A (.1) Potri.002G004800 [exp] 86 / 5e-17 AT2G33610 435 / 3e-149 CHROMATIN REMODELING COMPLEX SUBUNIT B, switch subunit 3 (.1) Potri.006G017300 [exp] 82 / 6e-16 AT4G16420 640 / 0.0 PROPORZ1, homolog of yeast ADA2 2B (.1.2.3) Potri.016G007600 [exp] 82 / 1e-15 AT4G16420 602 / 0.0 PROPORZ1, homolog of yeast ADA2 2B (.1.2.3) Potri.014G166300 [exp] 78 / 2e-14 AT3G07740 582 / 0.0 homolog of yeast ADA2 2A (.1.2.3.4) Potri.012G038300 [exp] 46 / 0.0001 AT1G18330 158 / 5e-44 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0006 [flax] [poplar] C1 PF00569 [flax] [poplar] ZZ Zinc finger, ZZ type CL0123 [flax] [poplar] HTH PF04433 [flax] [poplar] SWIRM SWIRM domain CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10040472 pacid=23173931 polypeptide=Lus10040472 locus=Lus10040472.g ID=Lus10040472.BGIv1.0 annot-version=v1.0 ATGGACGACAGATCGCCGGCGGGAGCCGATTCACCGGCGTCGGCGGAGCCTTCAAGGCGGCGAGGTGGGCTGAAGAGGAAGGCAAATTCGCTCTCGGGTT CTTCTTTCTTCTCCTCTTCCGCACCTTCGAAGCGGATGACGACACGAGAGAAATCAGCTATGATGTCGTCGTTCTCCAACTCTCCATTTCACAACGGCCC GTTGACAAGGGCTGCCAGGCATGGTCCCAGCAATCTCACTTCTTCGGCGGCGGCTGCAACTACTTCGGTGAAGCTCGAGGATAAGGAGAGAGCTGGATTA GCTGCTGTTGCGACAGCTGTTGAGGAGGAGGAGAGGAAGAGATTGGAGGAGCTGGAGAAGAAGATCGAGTTAGAATTTGAATGTGTTAGATCGAGGGAGG CTAACGCTCATGTGGTGCCTAATCACTGCGGGTGGTTTTCATGGACTAAAGTTCATCCTCTTGAGGAGCATTCGTTGCCTTCATTCTTCAGTGGGAAGTC CCCTAATCGGACACCTGCGACATACATGGAGATACGTAATTGGATTGTAAGGAAATTTCATGCAAACCCAAATGAACTGATTGAGTTGAAAGATTTATCA GATTTGGAAGTTGCAGACTTGGAAGCGAGACAGGAGGTGCTAGAGTTCTTGGACTACTGGGGATTGATTAATTTCCACTCTTTTCCAGAAAAAGATTCTT CTGAAAATTCCAAGGGCGATGAAGCAAAGGACTCTTTGCTGGAGAAGTTATTCCGCTTTGGACCTATTTCATCATGTGCAGGAGTTGTTCCCAAGCCTAA CGTCGTAACTGCATCTCTACCACCCGGATTTTTTCCAGATTCTGCTGCAATTAGGGAAGAGTTGTTACAGCCCGAGGGACCTGCAGTCGAGTACCACTGT AATTCTTGTTCAGCTGATTGCTCTCGCAAGCGCTACCACTGTCCGAAGCAGGCAGATTATGATTTATGTGCGGATTGCTTTAGTAATGGGAAGTTCGATA CAGACATGTCGTCTTCAGATTTTATTCTTATGGAGCCTGGGGAGGTTCGTGGTCTTAATGGAGGAAAGTGGACAGATCAAGAGACCCTACTTCTCTTAGA GGCAATTGAAATTTATAAAGAAAACTGGAGTGAGATTGCTGAACATGTTGCTACAAAAACAAAGGCTCAGTGTATCTTACACTTTGTACAAATGCCAATC GAGGATTCCTTTTTTGAATCTGATGATACGGTGGAAAATCTAAAGGAACCAGCTGATAAAAGTGCAACCAATGATAATGCTCCTGAAACGACTGATGCTA AAGCTGATCCCAAGGAGGACCTTTGTCAGACTTCTCCAATGGAGACTTCAAACCTGGAAACCGGTGAAGAGAGAGACACTTCTGAGAATGATGGTGAAGG AAAGCAAAGTGATCATGAATCAAAACCAAATGCTGATGAAGCAAAAGTTACTTCAGAACCTTCAAAGCAAGATGCCGGTGAAGGAAAGACTTGCGAAGAG TCTGGTGAACGGAAGGCTTGTGAAGAGTCTGGTGAAGGAAAGGCTTGTGAAGATTCAGGTGAAGGAAAGGCTTGTGAAGAGTCCGGTGAAGATGTTGCAG TAAAAGCTCTAACAGAAGCATTGGAGGCTAATGGTTACGTTTCTAGTCCCGGCTTATCATTTGCTGAAGTTGGAAACCCTGCCATAGCTTTGGCAACTTT TTTTGTCAGATTGGTTGGAGGGGATGTCGCTTCTGCTTCAGCTCACAGTTCTCTAAAATCATTATCAAGCAGCTCCCCAGGTGTGCAACTTGCAGCGCGA CATTGCTTTCTCTTGGAACATCCACCGGATAACGGAAAGGAACAAGAAAGCAGTGATCGGGGTGTGACTGCGAAGACTGAAGAGAATTCTCCTAGAGACA GCCAAGAGGAGATGAACCAGTTGGTTAATAATCCAAGTTCAGGTTCAGATGCGTTGGCTTTGGTGGATATCCCAGATAAAGATGGAAGCAAATCTTCTAC TGAAGAAAACAAACCAAAGGTTCCTTCAGATGACAATTCCAAGGGAAAGACTAGTGACGAATCTGGTCCCGATGTAAGTCACGAGGGAGGTGAAACAAAC GTGTCAAAGGTACTAACCGATTCGGACCGATCACTCAATGCCGCGGAGGAGTCGATTAAACCAGAATCCAAGTCAGAACCCTTGACAGAGTCTGTAAAGG AGCAGGAAAAGGGATCTTCTGCAGTTGAATGCTCCGACATTAAAACATCAGAGAAAAGCAACGACCCATCTCCATCGACAGCTGGTGAAGAGCCAATTGA AGCTGCTGAGGTGTCAAAAGATGTAGAAACTGTCTCAGATGCTCCTCCCGTGGATATGAATGAGACAGAAGAACAGCCCAAACTTAATTCGGCTGCAGAT AGTGTTGAACCGGCAGTGATCCCGAAGGATATTGAGAAGGATAGTCACCAACCAGCATCACCAAGTGCTTTGGTTGAAAATGGAGCAACTCCAGAGGAAG ACCAAAAGGACAGTACTTTGGAGAAGCCTGATAATAAAGAGACTAAAGATGGCAGCAAGATCGATAGGATAAAGCGAACTGGAGTTGCTGTACTTTCCGC AGCTGCAGTGAAGGCGAAACTTCTGGCAAATCAAGAAGAGGACCAAATCCGCCAACTAACTGCTGCTATGATCGAAAAACAGCTAAATAAACTTGAAATG AAGCTGGCTTTCTTCAACGATATGGACACTGTGATTCTAAGGGTGAAGGAACAACTTGACAGGTCCAGACAAAGACTTTACCAAGAACGTGCACAAATAA TTGCAGCTCGCCTCGGGTTTCAAGCTTCGTCGTCTAAACCTGTCCAACCCTCCGCTCTAGCTGCCAACAGAGTCGCAATGAACTTCTCAAATGCATTCCC AAGGCCGCCCATGAGCTTGACATCCCAAATGCCGCCGATTCCTAGGCCGTTGGCTCCGGTGGGGGCTAATGTTTCGGAGCCTTTGAACCCTTCCGTGGTA GGAAATTCAACTAGGCCCTCCAGTCAGGATCCTGCATCTTCAGTCGAGACTAAGTAG
AA sequence Show only first row Show all	>Lus10040472 pacid=23173931 polypeptide=Lus10040472 locus=Lus10040472.g ID=Lus10040472.BGIv1.0 annot-version=v1.0 MDDRSPAGADSPASAEPSRRRGGLKRKANSLSGSSFFSSSAPSKRMTTREKSAMMSSFSNSPFHNGPLTRAARHGPSNLTSSAAAATTSVKLEDKERAGL AAVATAVEEEERKRLEELEKKIELEFECVRSREANAHVVPNHCGWFSWTKVHPLEEHSLPSFFSGKSPNRTPATYMEIRNWIVRKFHANPNELIELKDLS DLEVADLEARQEVLEFLDYWGLINFHSFPEKDSSENSKGDEAKDSLLEKLFRFGPISSCAGVVPKPNVVTASLPPGFFPDSAAIREELLQPEGPAVEYHC NSCSADCSRKRYHCPKQADYDLCADCFSNGKFDTDMSSSDFILMEPGEVRGLNGGKWTDQETLLLLEAIEIYKENWSEIAEHVATKTKAQCILHFVQMPI EDSFFESDDTVENLKEPADKSATNDNAPETTDAKADPKEDLCQTSPMETSNLETGEERDTSENDGEGKQSDHESKPNADEAKVTSEPSKQDAGEGKTCEE SGERKACEESGEGKACEDSGEGKACEESGEDVAVKALTEALEANGYVSSPGLSFAEVGNPAIALATFFVRLVGGDVASASAHSSLKSLSSSSPGVQLAAR HCFLLEHPPDNGKEQESSDRGVTAKTEENSPRDSQEEMNQLVNNPSSGSDALALVDIPDKDGSKSSTEENKPKVPSDDNSKGKTSDESGPDVSHEGGETN VSKVLTDSDRSLNAAEESIKPESKSEPLTESVKEQEKGSSAVECSDIKTSEKSNDPSPSTAGEEPIEAAEVSKDVETVSDAPPVDMNETEEQPKLNSAAD SVEPAVIPKDIEKDSHQPASPSALVENGATPEEDQKDSTLEKPDNKETKDGSKIDRIKRTGVAVLSAAAVKAKLLANQEEDQIRQLTAAMIEKQLNKLEM KLAFFNDMDTVILRVKEQLDRSRQRLYQERAQIIAARLGFQASSSKPVQPSALAANRVAMNFSNAFPRPPMSLTSQMPPIPRPLAPVGANVSEPLNPSVV GNSTRPSSQDPASSVETK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34430		ATSWI3D, CHB3	SWITCH/SUCROSE NONFERMENTING 3...		Lus10040472 [exp]	0	1
AT4G02560	HD	LD	luminidependens, Homeodomain-l...		Lus10009816 [exp]	2.6	0.9482
AT4G15180		SDG2, ATXR3	SET domain protein 2 (.1)		Lus10018496 [exp]	6.5	0.9389
AT3G12810		CHR13, SRCAP, P...	PHOTOPERIOD-INDEPENDENT EARLY ...		Lus10002974 [exp]	9.3	0.9456
AT1G70060		SNL4	SIN3-like 4 (.1)		Lus10010729 [exp]	10.0	0.9354
AT5G23150		HUA2	ENHANCER OF AG-4 2, Tudor/PWWP...		Lus10040980 [exp]	11.5	0.9321
AT5G23150		HUA2	ENHANCER OF AG-4 2, Tudor/PWWP...		Lus10013433 [exp]	11.7	0.9221
AT3G12810		CHR13, SRCAP, P...	PHOTOPERIOD-INDEPENDENT EARLY ...		Lus10007173 [exp]	12.6	0.9242
AT2G20000		CDC27b, HBT	HOBBIT, CDC27 family protein ...		Lus10034945 [exp]	14.0	0.9247
AT1G24706		EMB2793, AtTHO2	EMBRYO DEFECTIVE 2793, THO2 (....		Lus10031945 [exp]	15.1	0.9386
AT1G06230		GTE4	global transcription factor gr...		Lus10033624 [exp]	16.2	0.9145

Compare expression of checked genes

Lus10040472 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.