Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74310 1442 / 0 HOT1, ATHSP101 heat shock protein 101 (.1) AT5G15450 792 / 0 AtCLPB3, APG6, CLPB3, CLPB-P CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) AT2G25140 764 / 0 HSP98.7, CLPB-M, CLPB4 HEAT SHOCK PROTEIN 98.7, CASEIN LYTIC PROTEINASE B-M, casein lytic proteinase B4 (.1) AT4G14670 744 / 0 CLPB2 casein lytic proteinase B2 (.1) AT5G50920 586 / 0 CLPC1, CLPC, ATHSP93-V, HSP93-V, DCA1 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) AT3G48870 575 / 0 ClpC2, ATCLPC, ATHSP93-III, HSP93-III ClpC2, Clp ATPase (.1.2) AT5G51070 494 / 1e-160 SAG15, CLPD, ERD1 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) AT3G45450 152 / 2e-40 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT3G52490 105 / 6e-23 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT5G57710 102 / 6e-22 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021159 [exp] 1522 / 0 AT1G74310 1421 / 0.0 heat shock protein 101 (.1) Lus10040527 [exp] 1031 / 0 AT1G74310 906 / 0.0 heat shock protein 101 (.1) Lus10030705 [exp] 775 / 0 AT5G15450 1619 / 0.0 CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) Lus10013191 [exp] 752 / 0 AT5G15450 1605 / 0.0 CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) Lus10041018 [exp] 751 / 0 AT2G25140 1511 / 0.0 HEAT SHOCK PROTEIN 98.7, CASEIN LYTIC PROTEINASE B-M, casein lytic proteinase B4 (.1) Lus10016723 [exp] 584 / 0 AT5G50920 1526 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Lus10032544 [exp] 582 / 0 AT5G50920 1271 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Lus10036017 [exp] 579 / 0 AT5G50920 1542 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Lus10043197 [exp] 348 / 7e-111 AT5G50920 802 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G057000 [exp] 1496 / 0 AT1G74310 1567 / 0.0 heat shock protein 101 (.1) Potri.015G056900 [exp] 1495 / 0 AT1G74310 1566 / 0.0 heat shock protein 101 (.1) Potri.004G124800 [exp] 792 / 0 AT5G15450 1567 / 0.0 CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) Potri.017G090600 [exp] 772 / 0 AT5G15450 1598 / 0.0 CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) Potri.006G262700 [exp] 750 / 0 AT2G25140 1361 / 0.0 HEAT SHOCK PROTEIN 98.7, CASEIN LYTIC PROTEINASE B-M, casein lytic proteinase B4 (.1) Potri.015G105100 [exp] 592 / 0 AT5G50920 1508 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Potri.012G105900 [exp] 592 / 0 AT5G50920 1505 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Potri.012G112000 [exp] 504 / 2e-164 AT5G51070 1328 / 0.0 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) Potri.015G110000 [exp] 488 / 1e-158 AT5G51070 1282 / 0.0 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) Potri.005G197400 [exp] 297 / 8e-91 AT5G50920 583 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02861 [flax] [poplar] Clp_N Clp amino terminal domain, pathogenicity island component CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA) CL0023 [flax] [poplar] P-loop_NTPase PF07724 [flax] [poplar] AAA_2 AAA domain (Cdc48 subfamily) CL0671 [flax] [poplar] AAA_lid PF10431 [flax] [poplar] ClpB_D2-small C-terminal, D2-small domain, of ClpB protein
Representative CDS sequence Show only first row Show all	>Lus10040528 pacid=23157802 polypeptide=Lus10040528 locus=Lus10040528.g ID=Lus10040528.BGIv1.0 annot-version=v1.0 ATGGATCCTGGCAAGTTCACCCACAAGACAAACGAAGCCATAGCCAATGCCCATGAACTGGCATCAACCGCCGGACATGCCCAGATAACCCCTCTCCACC TCGCTGTCGCCTTAATAACCGACCCCGCCGGAATATTCCCCCAAGCAATCGCCAATTCCGCCTCCGCCGGCGAAGCTGCGGCCCAATCTGTGGAGAGGGT GTTTAACCAGGTCCTCAAGAAGCTACCGTCTCAATCCCCGCCTCCGGACCAAGTTCCGCCGAGCACCAGCCTGATCAAAGTCCTCAGGCGGGCCCAATCG CTGATGAAGTCCCGCGGGGATACACATTTGGCCGTCGATCAGCTTATTCTAGGCCTTCTGGAGGACTCCCAAATCGGGGAGCTGCTCAGGGAAGCAGGGA TTGTGGCAGCCAAAGTCAAATCCGAGGTGGAGAAGCTGCGAGGCAAAGAAGGTAAAAAGGTCGAGAGCGCCACGGGCGACACTACTTTCCAGGCGTTGCA GACTTACGGGAGGGATTTGGTCGAGCAAGCTGGGAAGCTGGATCCCGTAATAGGGAGGGACGACGAAATCAGGAGAGTAATCCGGATTCTGTCTCGAAGG ACGAAGAACAATCCTGTTCTTATCGGAGAGCCAGGCGTGGGGAAAACAGCCGTCGTTGAAGGACTTGCTCAGAGGATCGTTCGTGGCGATGTCCCGAGTA ACCTATCAGATGTTAGGCTGATTGCATTGGACATGGGAGCTTTGGTTGCTGGAGCCAAGTACAGAGGGGAATTCGAAGAACGGTTGAAATCGGTGTTGAA GGAAGTTGAGGAAGCGGAAGGGAAAGTGATTCTGTTTATAGATGAGATTCATCTCGTTCTTGGAGCTGGTCGAACGGAGGGTTCGATGGACGCTGCGAAT CTGTTCAAACCGATGCTTGCTCGAGGGCAGCTCAGGTGCATTGGGGCCACCACATTGGAAGAGTACAGGAAGTATGTGGAGAAAGATGCTGCCTTCGAGA GAAGTTTTCAGCAAGTTTATGTTGCGGAGCCTAGTGTATCCGATACCATCAACATTCTTCGTCGTCATTTGCCAGATAAGGCTATCGATTTAGTGGACGA AGCATGTGCTAATGTCCGAGTTCAGCTGGATAGCCAGCCTGAAGAAATTGATAATCTTGAGAGGAAAAGGATTCAATTAGAGGTTGAACTCCATGCACTT GAGAAGGAGAAAGATAAAGCCAGTAAAGCTCGACTCACGGAGGTGGTGAAAGAGCTTGATGATTTGAGGGACAAACTCCAACCACTGATGATGAAGTACA AGAAGGAGAAAGAAAGGATTGATGAAATCCGCAGACTAAAGCAAAAGAGGGAGGAAATACATTTCTCCATTCAAGAGGCCGAGAGGAGATATGATCTGGC CCGAGTTGCTGACTTGAAATATGGTGCATTAGAGGAGGTCGAGGCTGCCATAGCACGGCTTGAAGGAGGCACAACGGAAGGTAACTTGATGCTGACCGAA ACAGTTGGTCCTGAACATATTGCTGAAGTTGTCAGCCGATGGACCGGCATACCTGTCACGAGGCTTGGCCAGAATGACAAGGAACGACTAATCGGACTGG CAGACCGCTTGCATCAAAGAGTAGTTGGACAGAATGATGCTGTTGCTGCTGTTGCTGAGGCTGTGTTGAGATCAAGGGCTGGCTTGGGAAGGCCTCAACA GCCTACCGGTTCATTCTTGTTCTTGGGTCCCACTGGTGTGGGGAAAACTGAACTCGCCAAGGCTCTTGCTGAGCAGCTATTCGATGATGAGAATCAGATG GTTCGGATCGATATGTCAGAGTACATGGAGCAGCATTCGGTGTCGAGGCTCATTGGTGCTCCTCCAGGCTATGTAGGACATGAGGAAGGCGGTCAACTGA CAGAAGCTGTGAGGAGGCGGCCCTACAGTGTCATCCTCTTTGATGAAGTTGAGAAGGCTCATGTTTCTGTGTTCAACACACTTCTTCAAGTCTTGGACGA CGGGAGGCTGACCGATGGCCAAGGTCGGACCGTTGATTTCAGGAACACAGTCATCATTATGACCTCCAATCTTGGTGCTGAGCATCTGCTGTCTGGTGTG CTAGGTAAATGTCCGATGCAAGTTGCTAGGGACAAGGTTATGCAGGAGGTTAGGAAGCACTTCAGGCCAGAACTGCTGAACAGGTTGGATGAAGTGGTAG TTTTTGATCCTCTCTCGCATGACCAGTTGAGGAAAGTTGCGAGGCTGCAAATGAAAGATGTGGCTCTAAGGCTTGCGGAGCGGGGGATAGCAATAGGTGT GACTGATGCAGCCTTGGATCATGTGTTGGCAGAGAGCTATGACCCTGTTTATGGAGCACGTCCTATAAGGAGGTGGCTGGAGAAGAGGGTGGTAACAGAG CTATCAAGGATGTTGGTAAGAGAAGAGATTGATGAGAACTCAACAGTTTACATAGATGCATCTGCCGACGGGAAGGGATTGGCTTACCGGGTGGAGAAGA ATGGAGGTCTTGTGAATGCTGCAACTGGACTGAAAGGTGACATCCTGATAGAAGTTCCAAGTGGGAATGTTCAGAGGAGTGAAGCTGCCCAGGCTGTAAA GAAGCTGAAGATAGAAGAGATTGTAGATGATGAAGATGAGGAGATGGCGGACTAG
AA sequence Show only first row Show all	>Lus10040528 pacid=23157802 polypeptide=Lus10040528 locus=Lus10040528.g ID=Lus10040528.BGIv1.0 annot-version=v1.0 MDPGKFTHKTNEAIANAHELASTAGHAQITPLHLAVALITDPAGIFPQAIANSASAGEAAAQSVERVFNQVLKKLPSQSPPPDQVPPSTSLIKVLRRAQS LMKSRGDTHLAVDQLILGLLEDSQIGELLREAGIVAAKVKSEVEKLRGKEGKKVESATGDTTFQALQTYGRDLVEQAGKLDPVIGRDDEIRRVIRILSRR TKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLSDVRLIALDMGALVAGAKYRGEFEERLKSVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAAN LFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERSFQQVYVAEPSVSDTINILRRHLPDKAIDLVDEACANVRVQLDSQPEEIDNLERKRIQLEVELHAL EKEKDKASKARLTEVVKELDDLRDKLQPLMMKYKKEKERIDEIRRLKQKREEIHFSIQEAERRYDLARVADLKYGALEEVEAAIARLEGGTTEGNLMLTE TVGPEHIAEVVSRWTGIPVTRLGQNDKERLIGLADRLHQRVVGQNDAVAAVAEAVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENQM VRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVILFDEVEKAHVSVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGV LGKCPMQVARDKVMQEVRKHFRPELLNRLDEVVVFDPLSHDQLRKVARLQMKDVALRLAERGIAIGVTDAALDHVLAESYDPVYGARPIRRWLEKRVVTE LSRMLVREEIDENSTVYIDASADGKGLAYRVEKNGGLVNAATGLKGDILIEVPSGNVQRSEAAQAVKKLKIEEIVDDEDEEMAD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74310		HOT1, ATHSP101	heat shock protein 101 (.1)		Lus10040528 [exp]	0	1
AT1G74310		HOT1, ATHSP101	heat shock protein 101 (.1)		Lus10021159 [exp]	1.4	0.9969
AT1G74310		HOT1, ATHSP101	heat shock protein 101 (.1)		Lus10040527 [exp]	2.0	0.9944
AT1G74310		HOT1, ATHSP101	heat shock protein 101 (.1)		Lus10021160 [exp]	2.4	0.9798
AT1G74320			Protein kinase superfamily pro...		Lus10026145 [exp]	3.7	0.9529
AT1G55310		ATSCL33, SR33, ...	SC35-like splicing factor 33 (...		Lus10016215 [exp]	4.1	0.9296
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10023418 [exp]	4.5	0.9616
AT4G22580			Exostosin family protein (.1)		Lus10004341 [exp]	4.5	0.9604
AT4G25200		ATHSP23.6-MITO	mitochondrion-localized small ...		Lus10031154 [exp]	5.2	0.9506
AT5G39570			unknown protein		Lus10016220 [exp]	5.7	0.9524
AT5G64510		TIN1	tunicamycin induced 1, unknown...		Lus10020502 [exp]	6.6	0.9445

Compare expression of checked genes

Lus10040528 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.