Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13040 142 / 2e-38 GARP myb-like HTH transcriptional regulator family protein (.1.2) AT2G01060 129 / 1e-34 GARP myb-like HTH transcriptional regulator family protein (.1.2) AT3G24120 124 / 1e-32 GARP Homeodomain-like superfamily protein (.1.2) AT5G29000 122 / 2e-31 GARP PHL1 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) AT4G13640 120 / 3e-31 GARP UNE16 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) AT4G28610 119 / 4e-30 GARP ATPHR1, PHR1 phosphate starvation response 1 (.1) AT5G06800 118 / 6e-30 GARP myb-like HTH transcriptional regulator family protein (.1.2) AT1G79430 116 / 3e-29 GARP WDY, APL WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) AT1G69580 115 / 4e-29 GARP Homeodomain-like superfamily protein (.1.2) AT3G04450 114 / 2e-28 GARP Homeodomain-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040583 [exp] 696 / 0 AT3G13040 155 / 9e-43 myb-like HTH transcriptional regulator family protein (.1.2) Lus10028102 [exp] 497 / 2e-178 AT3G13040 155 / 6e-44 myb-like HTH transcriptional regulator family protein (.1.2) Lus10035705 [exp] 148 / 4e-40 AT3G13040 372 / 4e-125 myb-like HTH transcriptional regulator family protein (.1.2) Lus10037296 [exp] 133 / 1e-34 AT3G13040 364 / 5e-122 myb-like HTH transcriptional regulator family protein (.1.2) Lus10008197 [exp] 130 / 7e-34 AT5G29000 318 / 3e-105 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Lus10007132 [exp] 123 / 4e-32 AT4G13640 390 / 3e-137 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Lus10016676 [exp] 123 / 4e-32 AT4G13640 380 / 2e-133 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Lus10039124 [exp] 121 / 1e-31 AT2G01060 350 / 6e-122 myb-like HTH transcriptional regulator family protein (.1.2) Lus10001844 [exp] 122 / 1e-30 AT1G79430 286 / 3e-93 WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G151400 [exp] 189 / 6e-56 AT3G13040 176 / 4e-50 myb-like HTH transcriptional regulator family protein (.1.2) Potri.014G000700 [exp] 147 / 4e-40 AT3G13040 308 / 6e-101 myb-like HTH transcriptional regulator family protein (.1.2) Potri.007G003200 [exp] 147 / 5e-40 AT3G13040 330 / 1e-108 myb-like HTH transcriptional regulator family protein (.1.2) Potri.016G001100 [exp] 129 / 3e-34 AT2G01060 318 / 5e-109 myb-like HTH transcriptional regulator family protein (.1.2) Potri.006G000800 [exp] 127 / 1e-33 AT2G01060 321 / 1e-109 myb-like HTH transcriptional regulator family protein (.1.2) Potri.017G054800 [exp] 121 / 1e-31 AT4G13640 338 / 6e-117 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Potri.001G314800 [exp] 120 / 3e-31 AT4G13640 345 / 2e-119 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Potri.013G048000 [exp] 121 / 1e-30 AT5G29000 321 / 4e-106 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Potri.006G191000 [exp] 120 / 1e-30 AT5G06800 252 / 2e-80 myb-like HTH transcriptional regulator family protein (.1.2) Potri.019G020900 [exp] 120 / 3e-30 AT5G29000 306 / 4e-101 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10040569 pacid=23157617 polypeptide=Lus10040569 locus=Lus10040569.g ID=Lus10040569.BGIv1.0 annot-version=v1.0 ATGGTGTTGTACAACAAGGCTACCAATCCCCCAAATGGGTCTTCTTTCCACTTTCAGGGATCACTTCTCTCAACTCCTCCCCACTGCACCATCTTCTGCA CTGGCTTCCATTCAACTTCTGGAATCTCAGCTTTCATTCCACCTCTTCAACGTCCTATTATTTCTGATCATCATCAAGTCAACAACTACAACAACAACTC TGCAGATATGCCCTCTCTGGTCCTTGATGACCATAGCATGAAGAACCTGGATGACTTACTTCACATGACAGAAGAAAACAGCAACTTCCATCCATTAATG CATCCTCATGCTGCTAAGGACGTGGTCAGTATGACCTTGAAGGAAACCATGGGGTACCTTTCCAAAGAGCTTGACATCCCTCTTGATGACGTAGTAGACA ACAATGATAAACCTGCTGCTGGTCTGGAGGAAATTTTTGAACAGCCAACTGCTGGGAACAAAGATGATTACATGTCTGGAAGTAGCCATCAAAATTCTGA GGGTGTAACTTCCCACAAGCAGAGAATAAGATGGACCACTGAGCTCCATGACCTTTTCTTGGAAGCAGTTACAACCCTCGGAGGCCCTGATGTTGCAACT CCGAAGCGCATACTGTCAATTATGAACGTGGAGGGCTTAAACATCTACCACGTCAAGAGTCATTTACAGAAATATCGTCTCCAGACGCAAGAGAAAAGGA TCCCCAGCGCTGTGGAAAAGAAAAGTGCTTCATCCAATAATGATAGTCAAGGAAATATGAATCGAAACATGGTAGTGACTACAGCTCTACAAATGCAGAT CGATGTTCAGAAGCTGCTACACGATCAGCTTAAGGCACAAAAGCTGCTACAGTTGCGTATTGAACAGAACGGGGAGTTTCTGAAGAAGTTACTGGAAGAA CAACAGAAACTAACTCCCAGGAGCCGCCTTAATTCTCCTTCGTCGTCATCACAACTGGAGCTGTCGCACTATGCAGATGTCTCCTCACCCTCTCCTCAAA ACTCAACACCTTTGCTTTTAACAACTCACAACAATTCATCTCAACTATTAAGTAATCACCAAACTGACTCTACTAATTCAAAATGTCACAAGCGGCTTCG AGATGACAGATAA
AA sequence Show only first row Show all	>Lus10040569 pacid=23157617 polypeptide=Lus10040569 locus=Lus10040569.g ID=Lus10040569.BGIv1.0 annot-version=v1.0 MVLYNKATNPPNGSSFHFQGSLLSTPPHCTIFCTGFHSTSGISAFIPPLQRPIISDHHQVNNYNNNSADMPSLVLDDHSMKNLDDLLHMTEENSNFHPLM HPHAAKDVVSMTLKETMGYLSKELDIPLDDVVDNNDKPAAGLEEIFEQPTAGNKDDYMSGSSHQNSEGVTSHKQRIRWTTELHDLFLEAVTTLGGPDVAT PKRILSIMNVEGLNIYHVKSHLQKYRLQTQEKRIPSAVEKKSASSNNDSQGNMNRNMVVTTALQMQIDVQKLLHDQLKAQKLLQLRIEQNGEFLKKLLEE QQKLTPRSRLNSPSSSSQLELSHYADVSSPSPQNSTPLLLTTHNNSSQLLSNHQTDSTNSKCHKRLRDDR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13040	GARP		myb-like HTH transcriptional r...		Lus10040569 [exp]	0	1
AT3G13040	GARP		myb-like HTH transcriptional r...		Lus10040583 [exp]	1.0	0.9810
AT1G07380			Neutral/alkaline non-lysosomal...		Lus10034565 [exp]	3.5	0.8806
AT2G33050		AtRLP26	receptor like protein 26 (.1)		Lus10019693 [exp]	4.9	0.8638
AT1G27170			transmembrane receptors;ATP bi...		Lus10020536 [exp]	5.5	0.8160
AT1G68490			unknown protein		Lus10027557 [exp]	8.9	0.8381
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10022313 [exp]	10.1	0.7732
AT1G30690			Sec14p-like phosphatidylinosit...		Lus10031176 [exp]	10.5	0.8337
AT5G16020		GEX3	gamete-expressed 3 (.1)		Lus10034090 [exp]	11.7	0.8331
AT1G18010			Major facilitator superfamily ...		Lus10043370 [exp]	12.3	0.8189
AT4G24190		AtHsp90-7, HSP9...	SHEPHERD, HEAT SHOCK PROTEIN 9...		Lus10035109 [exp]	13.0	0.8202

Compare expression of checked genes

Lus10040569 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.