Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 356 / 1e-103 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G27180 355 / 8e-102 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G27170 352 / 5e-101 transmembrane receptors;ATP binding (.1.2) AT5G17680 315 / 5e-89 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G69550 288 / 8e-80 disease resistance protein (TIR-NBS-LRR class) (.1) AT5G41750 281 / 2e-78 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G18360 277 / 7e-78 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G16890 276 / 4e-76 BAL, SNC1 SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1, BALL, disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G44510 275 / 1e-75 TAO1 target of AVRB operation1 (.1) AT4G16950 275 / 2e-75 RPP5 RECOGNITION OF PERONOSPORA PARASITICA 5, Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000423 [exp] 1588 / 0 AT1G27180 338 / 5e-95 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10012311 [exp] 1441 / 0 AT5G36930 354 / 6e-103 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10004747 [exp] 1166 / 0 AT5G36930 342 / 3e-99 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10033953 [exp] 1150 / 0 AT5G36930 347 / 2e-102 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007829 [exp] 1124 / 0 AT5G36930 330 / 2e-94 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007821 [exp] 1093 / 0 AT5G36930 339 / 4e-98 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007823 [exp] 1033 / 0 AT1G27170 322 / 3e-92 transmembrane receptors;ATP binding (.1.2) Lus10007825 [exp] 1026 / 0 AT5G36930 318 / 2e-89 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007831 [exp] 1013 / 0 AT1G27180 332 / 7e-96 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T002200 [exp] 429 / 6e-132 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002400 [exp] 418 / 4e-128 AT5G36930 658 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G017082 [exp] 415 / 7e-126 AT5G36930 638 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G021681 [exp] 416 / 1e-125 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T001933 [exp] 416 / 2e-125 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T001500 [exp] 415 / 4e-125 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G001602 [exp] 408 / 5e-123 AT5G36930 778 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T005501 [exp] 407 / 1e-122 AT5G36930 612 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G016425 [exp] 407 / 4e-122 AT5G36930 650 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.003G014200 [exp] 406 / 8e-122 AT5G36930 673 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10040576 pacid=23157931 polypeptide=Lus10040576 locus=Lus10040576.g ID=Lus10040576.BGIv1.0 annot-version=v1.0 ATGTATTGCTCTCCGTTTATTGCTCTCTATGAGCTGTTTATCGGAAGGAGGAGGACGAGAGATTATTCCGATGAGTACTCAAACACCGATACTTCTCCAC AATCAGATTCTGCTTCTAGTACTTCTGCACTTTCTAATTTGGTGCCCCTACTTCAACAATCAGATTCTGCTTCTACTTCTGGAAATTCTTATTCGGTGCC CCTTCCCATCGGCGAGTATGAAGTGTTTCTAAATTTTAGAGGTCCGGATACCAATGATAATGTTACGGATATTCTTTACCGTTTCCTTACTCGTTCGAAA ATTCGCACGTTCAGAGACGATGATGAACTCCGTAAGGGAGAAGGAATATGGCCTAACCTTGTCAAAGCCATCAACCAGTCGAAGATTTCTGTTCTTATTT TCTCGCCTCGTTATGCTGAGAGCAAATGGTGCTTGAGAGAACTTGTTGAGATTATCGAACATCAAAAACGAGAAAAAGGACATGTTATACTTCCCATTTT CTACAAGGTGGATCCTAAAGTCGTACGCCATCAAACTGGGCCTTATCAAAATGCTTTTCAACAATATAAGAGGAATAATTTTGATGAAAAGACTATACAA AATTGGAAAAATGCGCTGAATGAGATTGGATCTTTAAAAGGGTGGCACATCAAAGCAAACAAAGAGGTTATAAATGTTGCGGATGTTGTTTCTGGAGTTG TATGGTCACATATAATCAAGAATAACAATACATTAGAGACTGATGAATTAGTTGGAATTGATCACCATGTAAAACAAGTAGTAGATATGTTAGATCTAGG TTCTGAAGGTGTGAATCTAGTTGGCATTTATGGTATGGGGGGTATTGGGAAGACCACTCTTGCAACATCGGTCTATAACAAAGTTCCTGCCTGCTTTGAT CGGTATAGCTTTGTGGAAGATATAAGAGAAACACAAGAACAAACTAACGGTGTTCTCGTGTTACAAAAGAAGTTGCTTTCTAACATCTTAAGGATGGACT CGGTTGGGTCAGAAGCAAAGAAAATCATACGGGAGAGGGTTACTCAGTTCAAGATCTTTGTGGTCCTTGATGATGTTGACGAAAAGTTCAACTTTGAGGA TGTCCTAGGAAATTTGAAAAGTTTCGCTCCAGGAAGTTGTTTTATCATCACTTCAAGAGATATGAAGGTCTTGGAAAAGTTAAGCGGAGATCAAACAAAG TTGTACGAAGTTCAAGAAATGGATGATAGTCGCTCCCTTCAATTATTTTACAAGCATGCATTCAGAGAAGATCGTATTTTGCCAGGTTTTGATGACTTAT CAAAAAAAATTGTATCTACTACAGGAGGACTTCCATTGGCACTTAAGGTTATAGGGTCACTTCTTTTCCGACAAAAAAAGGATTTTTGGGAAGACAAATT CGAACTATTACGAGAAATGCCAGATGAAGATGTAATGAACAGGTTAATGATTAGCTACACAACTTTAAACCAGAACGAACAACAAATATTTTTAGATATT GCTTGCTTTCATATCGGAGAGGATAAAGAAAAGGCTTCTTACATGTGGAGCGATTGCAAATATCATCCTGTCCTTCACATAAGTATCCTTGTTCAAAGAT CTATGCTCAAAATTGGAGATGAAAATGAGTTCCAAATACATGATCAACTTAGAGATATGGGTAGAGCGATTGTTCGTAAAAAAGATATGGAACATCCAGA AAGGAGAAGCAGAATATGGCTAGAAGAGGAAGCCAACGAGGTTTTAGCTGACAACAAGGGAACAGATCAAGTAAGAGCCATTAGAGCATCATACGGGGAA TATACTAGTGGAAGTGGATGTTTTAGGAATATGAAAGAATTGAGATATCTCCACGGAATAAACATGGAGCTAAAAGGAGATTTCAGTCGTCTTCTTCCTA ATTTGAAATGGATGCATTTAGAATATGGATGGTATTATCTTGGACAAAGGGTGTCTGGGGCCAGCAACTTCAATATGAAAAACATGGTCATATTTGACGT CACCAATTGTCCAATTGGCGACATCCCAACAAAGGAGGCAAAAAAACTCAAATTTCTAAAGGTTAGCAATTGTAGTAAGATGAGTAAGCTTCCAGAATTT CCAAAGACTCTTGAGATGCTACATTTTAGTAATTTCTCCAACAAAGAGGAAGATATGGAGGTCGGGAATCTGCAAAACTTAAAAGTACTAAAATTACAAG AATGCACATTGGGGAGGATCAACGGTGGTACGGTTGGGATGATGAATGGGCTTCGAGAGCTCTATCTGACTGCTATTAAATGTGATTTTGATAGTTTCAG AAGAGTGATTGCCGATATCGGAGCATTGTCATCTCTCGAAAAAATGGAGTTCAAAAATCCTTACCTGGAGAATGTTTTGGAAGGGATTATGCTACCAAAA AGCTTAAAGGTCCTATCCACTTCATCTTGTTTTGGTAATCTTTCGGAGCTGTTGGATTTGGAGGAATTCACTATCGACAATATTTGGGAGACGGAGGAGA CAGAGTTTGTGATCTCTTCAGCAGCTAAGTTGAAATCTATGAAGCTTTACTTCAAGAGGTCGAGGATAAGTATGGTTGAAGGTCAGAACGCTATGCTACC ATCATCCCTCACTATTGTTGACATTGACTATCTACAGTCTGATCGATTCCCGAATCTGAAGAATCTGAGCAACTTGACTCAATTAAAACTTTGGGATTGT CCTAATCTTCAAGAGATCCAAGGCCTCGGAAGGCTGAAATCATTACAAATTCTCGTGATCAGTTGGATGCGAAAGTTGGCTAATATTGAGGGCCTTGGGA ATCTCATGTCTTCTTCCAACTGCAAGTTGACAGATGTGCAGATAAAAAGATGTCGTCGTCTTCGTGCATTTCAGACATTCAACCAACATAATGAGGATGT TGATGATACTAATGATGCAGTACAAATCGAATCTTTACTCAAACTCAAGATAATTGGATGCCCATTAATGGATTGTAGATCAATACCCAAACTGTCCAAG TTTCCAAGACTTAGAGAGTTGTCGATTTACGAGATCGGTTGGGAGATGAATGATGAATCAGCCAGCCAGCTACTGGAAGGGCTTGACAACCTTGTAGAGT TGGTTGAATTGCGAGTCGGCCGTTTAGCAGGGGTAGAGAGACTACCTTGTCTATCAAAGCTCGCAAAGTTGACCAAGTTAATAGTGTATGACCAGCTTCC ATGTTTGAGAGAGATTGTAGGACTCGGAGCATTGAAGTTGCTACAAGAGTTAGAAGTGGGTGGTTGCATTTTGTTGGAAAAATTGCCTGTTGAGGATCTA ATCAAGTTGGAGAAGTTAACAGTGTCTGGCCTTCCATGTTTGCCAGAGATTGTGGGATTCGGAGAATTGAAGTCATTAAAAGAGTTAACGGTGAGTGGTT GCATTTCGTTGGAAAAATTGCCCGTCGAGGATCTATCCGAATTGGAGAAGTTAAAAGTCTCTGGCCTGCCATGTTTGCGAGAGATTGCGGGATTCGGAGA ATTGAAGTCGTTGAAAGAATTAGAAGTGTCTGACCTTCCATGTTTGCGAGAGATTGTGGGGTTCGGAAAATTGAAGTCGTTAAAACGGTTACAAGTGAAT GGTTGCATTTCGTTGGAAAGATTGTCCATCGAAGGACTACCCTACTCCACTATGTATTATATAAAGTTGGACTTAAAAGGATGCACAAATTTCAGTAACG CTCATTTTGATATTTCTCCCCTCACCACCCAAGGAGCAGACCTAAGAAGAGTAAAGTTAATCATCAACTGGCCAGAAGAACATTTGCGGTAA
AA sequence Show only first row Show all	>Lus10040576 pacid=23157931 polypeptide=Lus10040576 locus=Lus10040576.g ID=Lus10040576.BGIv1.0 annot-version=v1.0 MYCSPFIALYELFIGRRRTRDYSDEYSNTDTSPQSDSASSTSALSNLVPLLQQSDSASTSGNSYSVPLPIGEYEVFLNFRGPDTNDNVTDILYRFLTRSK IRTFRDDDELRKGEGIWPNLVKAINQSKISVLIFSPRYAESKWCLRELVEIIEHQKREKGHVILPIFYKVDPKVVRHQTGPYQNAFQQYKRNNFDEKTIQ NWKNALNEIGSLKGWHIKANKEVINVADVVSGVVWSHIIKNNNTLETDELVGIDHHVKQVVDMLDLGSEGVNLVGIYGMGGIGKTTLATSVYNKVPACFD RYSFVEDIRETQEQTNGVLVLQKKLLSNILRMDSVGSEAKKIIRERVTQFKIFVVLDDVDEKFNFEDVLGNLKSFAPGSCFIITSRDMKVLEKLSGDQTK LYEVQEMDDSRSLQLFYKHAFREDRILPGFDDLSKKIVSTTGGLPLALKVIGSLLFRQKKDFWEDKFELLREMPDEDVMNRLMISYTTLNQNEQQIFLDI ACFHIGEDKEKASYMWSDCKYHPVLHISILVQRSMLKIGDENEFQIHDQLRDMGRAIVRKKDMEHPERRSRIWLEEEANEVLADNKGTDQVRAIRASYGE YTSGSGCFRNMKELRYLHGINMELKGDFSRLLPNLKWMHLEYGWYYLGQRVSGASNFNMKNMVIFDVTNCPIGDIPTKEAKKLKFLKVSNCSKMSKLPEF PKTLEMLHFSNFSNKEEDMEVGNLQNLKVLKLQECTLGRINGGTVGMMNGLRELYLTAIKCDFDSFRRVIADIGALSSLEKMEFKNPYLENVLEGIMLPK SLKVLSTSSCFGNLSELLDLEEFTIDNIWETEETEFVISSAAKLKSMKLYFKRSRISMVEGQNAMLPSSLTIVDIDYLQSDRFPNLKNLSNLTQLKLWDC PNLQEIQGLGRLKSLQILVISWMRKLANIEGLGNLMSSSNCKLTDVQIKRCRRLRAFQTFNQHNEDVDDTNDAVQIESLLKLKIIGCPLMDCRSIPKLSK FPRLRELSIYEIGWEMNDESASQLLEGLDNLVELVELRVGRLAGVERLPCLSKLAKLTKLIVYDQLPCLREIVGLGALKLLQELEVGGCILLEKLPVEDL IKLEKLTVSGLPCLPEIVGFGELKSLKELTVSGCISLEKLPVEDLSELEKLKVSGLPCLREIAGFGELKSLKELEVSDLPCLREIVGFGKLKSLKRLQVN GCISLERLSIEGLPYSTMYYIKLDLKGCTNFSNAHFDISPLTTQGADLRRVKLIINWPEEHLR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27180			disease resistance protein (TI...		Lus10040576 [exp]	0	1
AT4G10940			RING/U-box protein (.1)		Lus10001535 [exp]	2.8	0.8691
AT1G30370		DLAH	DAD1-like acylhydrolase, alpha...		Lus10023281 [exp]	2.8	0.8837
AT1G68800	TCP	TCP12, BRC2, TC...	BRANCHED 2, TCP domain protein...		Lus10032465 [exp]	5.5	0.8175
AT5G15270			RNA-binding KH domain-containi...		Lus10017596 [exp]	6.2	0.7911
AT4G30360		ATCNGC17	cyclic nucleotide-gated channe...		Lus10008900 [exp]	6.9	0.7875
AT4G00730	HD	AHDP, ANL2	ANTHOCYANINLESS 2, ARABIDOPSIS...		Lus10003299 [exp]	8.1	0.7993
AT4G24690		AtNBR1	Arabidopsis thaliana next to B...		Lus10043320 [exp]	8.7	0.6988
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Lus10026377 [exp]	11.0	0.7697
AT1G69550			disease resistance protein (TI...		Lus10024150 [exp]	12.3	0.6985
					Lus10011588 [exp]	12.4	0.7753

Compare expression of checked genes

Lus10040576 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.