Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13040 140 / 3e-37 GARP myb-like HTH transcriptional regulator family protein (.1.2) AT2G01060 126 / 2e-33 GARP myb-like HTH transcriptional regulator family protein (.1.2) AT3G24120 123 / 3e-32 GARP Homeodomain-like superfamily protein (.1.2) AT5G29000 122 / 2e-31 GARP PHL1 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) AT4G13640 120 / 4e-31 GARP UNE16 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) AT4G28610 120 / 2e-30 GARP ATPHR1, PHR1 phosphate starvation response 1 (.1) AT5G18240 117 / 2e-29 GARP MYR1, ATMYR1 ARABIDOPSIS MYB-RELATED PROTEIN 1, myb-related protein 1 (.1.2.3.4.5) AT3G04030 115 / 9e-29 GARP Homeodomain-like superfamily protein (.1.2.3) AT5G06800 115 / 1e-28 GARP myb-like HTH transcriptional regulator family protein (.1.2) AT1G79430 114 / 3e-28 GARP WDY, APL WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040569 [exp] 696 / 0 AT3G13040 157 / 7e-44 myb-like HTH transcriptional regulator family protein (.1.2) Lus10028102 [exp] 488 / 1e-174 AT3G13040 155 / 6e-44 myb-like HTH transcriptional regulator family protein (.1.2) Lus10035705 [exp] 146 / 3e-39 AT3G13040 372 / 4e-125 myb-like HTH transcriptional regulator family protein (.1.2) Lus10037296 [exp] 131 / 9e-34 AT3G13040 364 / 5e-122 myb-like HTH transcriptional regulator family protein (.1.2) Lus10008197 [exp] 130 / 2e-33 AT5G29000 318 / 3e-105 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Lus10016676 [exp] 121 / 2e-31 AT4G13640 380 / 2e-133 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Lus10007132 [exp] 121 / 2e-31 AT4G13640 390 / 3e-137 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Lus10039124 [exp] 119 / 7e-31 AT2G01060 350 / 6e-122 myb-like HTH transcriptional regulator family protein (.1.2) Lus10022886 [exp] 120 / 5e-30 AT4G28610 310 / 7e-102 phosphate starvation response 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G151400 [exp] 189 / 9e-56 AT3G13040 176 / 4e-50 myb-like HTH transcriptional regulator family protein (.1.2) Potri.007G003200 [exp] 146 / 3e-39 AT3G13040 330 / 1e-108 myb-like HTH transcriptional regulator family protein (.1.2) Potri.014G000700 [exp] 144 / 5e-39 AT3G13040 308 / 6e-101 myb-like HTH transcriptional regulator family protein (.1.2) Potri.016G001100 [exp] 127 / 8e-34 AT2G01060 318 / 5e-109 myb-like HTH transcriptional regulator family protein (.1.2) Potri.006G000800 [exp] 126 / 3e-33 AT2G01060 321 / 1e-109 myb-like HTH transcriptional regulator family protein (.1.2) Potri.001G314800 [exp] 122 / 6e-32 AT4G13640 345 / 2e-119 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Potri.017G054800 [exp] 121 / 1e-31 AT4G13640 338 / 6e-117 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Potri.019G020900 [exp] 118 / 1e-29 AT5G29000 306 / 4e-101 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Potri.013G048000 [exp] 119 / 2e-29 AT5G29000 321 / 4e-106 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Potri.006G191000 [exp] 117 / 2e-29 AT5G06800 252 / 2e-80 myb-like HTH transcriptional regulator family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10040583 pacid=23157673 polypeptide=Lus10040583 locus=Lus10040583.g ID=Lus10040583.BGIv1.0 annot-version=v1.0 ATGGTGTTGTACAACAAGGCTACCAATCCCCCAAATGGGTCTTCTTTCCACTTTCAGGGATCACTTCTCTCAACTCCTCCCCACTGCACCATCTTCTGCA CTGGCTTCCATTCAACTTCTGGAATCTCAGCTTTCATTCCACCTCTTCAACGTCCTATTATTTCTGATCATCATCAAGTCAACAACTACAACAACAACTC TGCAGATATGCCCTCTCTGGTCCTTGATGACCATAGCATGAAGAACCTGGATGACTTACTTCACATGACAGAAGAAAACAGCAACTTCCATCCATTAATG CATCCTCATGCTGCTAAGGACGTGGTCAGTATGACCTTGAAGGAAACCATGGGGTACCTTTCCAAAGAGCTTGACATCCCTCTTGATGACGTAGTAGACA ACAATGATAAACCTGCTGCTGGTCTGGAGGAAATTTTTGAACAGCCAACTGCTGGGAACAAAGATGATTACATGTCTGGAAGTAGCCATCAAAATTCTGA GGGTGTAACTTCCCACAAGCAGAGAATAAGATGGACCACTGAGCTCCATGACCTTTTCTTGGAAGCAGTTACAACCCTCGGAGGCCCTGATGTTGCAACT CCGAAGCGCATACTGTCAATTATGAACGTGGAGGGCTTAAACATCTACCACGTCAAGAGTCATTTACAGAAATATCGTCTCCAGACGCAAGTTAGCAGTG TTCTTCATCTTGTTCCTAACTGTTCAGAGAAAAGGATCCCCAGCGCTGTGGAAAAGAAAAGTGCTTCATCCAATAATGATAGTCAAGGAAATATGAATCG AAACATGGTAGTGACTACAGCTCTACAAATGCAGATCGATGTTCAGAAGCTGCTACACGATCAGCTTAAGGCACAAAAGCTGCTACAGTTGCGTATTGAA CAGAACGGGGAGTTTCTGAAGAAGTTACTGGAAGAACAACAGAAACTAACTCCCAGGAGCCGCCTTAATTCTCCTTCGTCGTCATCACAACTGGAGCTGT CGCACTATGCAGATGTCTCCTCACCCTCTCCTCAAAACTCAACACCTTTGCTTTTAACAACTCACAACAATTCATCTCAACTATTAAGTAATCACCAAAC TGACTCTACTAATTCAAAATGTCACAAGCGGCTTCGAGATGACAGATAA
AA sequence Show only first row Show all	>Lus10040583 pacid=23157673 polypeptide=Lus10040583 locus=Lus10040583.g ID=Lus10040583.BGIv1.0 annot-version=v1.0 MVLYNKATNPPNGSSFHFQGSLLSTPPHCTIFCTGFHSTSGISAFIPPLQRPIISDHHQVNNYNNNSADMPSLVLDDHSMKNLDDLLHMTEENSNFHPLM HPHAAKDVVSMTLKETMGYLSKELDIPLDDVVDNNDKPAAGLEEIFEQPTAGNKDDYMSGSSHQNSEGVTSHKQRIRWTTELHDLFLEAVTTLGGPDVAT PKRILSIMNVEGLNIYHVKSHLQKYRLQTQVSSVLHLVPNCSEKRIPSAVEKKSASSNNDSQGNMNRNMVVTTALQMQIDVQKLLHDQLKAQKLLQLRIE QNGEFLKKLLEEQQKLTPRSRLNSPSSSSQLELSHYADVSSPSPQNSTPLLLTTHNNSSQLLSNHQTDSTNSKCHKRLRDDR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13040	GARP		myb-like HTH transcriptional r...		Lus10040583 [exp]	0	1
AT3G13040	GARP		myb-like HTH transcriptional r...		Lus10040569 [exp]	1.0	0.9810
AT1G07380			Neutral/alkaline non-lysosomal...		Lus10034565 [exp]	2.4	0.8889
AT2G33050		AtRLP26	receptor like protein 26 (.1)		Lus10019693 [exp]	2.4	0.8761
AT1G27170			transmembrane receptors;ATP bi...		Lus10020536 [exp]	4.2	0.8188
AT5G16020		GEX3	gamete-expressed 3 (.1)		Lus10034090 [exp]	6.3	0.8577
AT1G68490			unknown protein		Lus10027557 [exp]	9.2	0.8417
AT5G25610		ATRD22, RD22	RESPONSIVE TO DESSICATION 22, ...		Lus10006555 [exp]	11.0	0.8195
AT2G45910			U-box domain-containing protei...		Lus10036363 [exp]	14.1	0.8151
AT5G37590			Tetratricopeptide repeat (TPR)...		Lus10004034 [exp]	16.1	0.8077
AT1G66930			Protein kinase superfamily pro...		Lus10008362 [exp]	16.3	0.8208

Compare expression of checked genes

Lus10040583 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.