Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58850 229 / 1e-71 MYB ATMYB119 myb domain protein 119 (.1) AT5G11050 225 / 2e-70 MYB ATMYB64 myb domain protein 64 (.1) AT4G18770 187 / 7e-56 MYB ATMYB98 myb domain protein 98 (.1) AT3G27785 181 / 4e-53 MYB PGA37, ATMYB118 PLANT GROWTH ACTIVATOR 37, myb domain protein 118 (.1) AT5G40360 156 / 1e-44 MYB ATMYB115 myb domain protein 115 (.1) AT3G09370 149 / 7e-41 MYB ATMYB3R-3, ATMYB3R3 myb domain protein 3R3, myb domain protein 3r-3 (.1.2) AT5G02320 146 / 2e-39 MYB MYB3R-5, ATMYB3R5 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3R5, myb domain protein 3r-5 (.1.2) AT2G25230 135 / 5e-38 MYB ATMYB100 myb domain protein 100 (.1) AT5G11510 140 / 1e-36 MYB ATMYB3R-4, AtMYB3R4 myb domain protein 3R4, myb domain protein 3r-4 (.1.2) AT4G32730 137 / 1e-35 MYB ATMYB3R-1, PC-MYB1, ATMYB3R1 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018220 [exp] 440 / 7e-155 AT5G58850 257 / 7e-82 myb domain protein 119 (.1) Lus10005864 [exp] 229 / 4e-72 AT5G58850 209 / 3e-63 myb domain protein 119 (.1) Lus10027695 [exp] 191 / 3e-56 AT4G18770 276 / 1e-87 myb domain protein 98 (.1) Lus10042111 [exp] 181 / 2e-53 AT4G18770 249 / 8e-79 myb domain protein 98 (.1) Lus10002384 [exp] 179 / 2e-52 AT4G18770 250 / 7e-79 myb domain protein 98 (.1) Lus10039966 [exp] 174 / 1e-50 AT4G18770 256 / 2e-81 myb domain protein 98 (.1) Lus10013084 [exp] 151 / 1e-42 AT3G27785 183 / 6e-54 PLANT GROWTH ACTIVATOR 37, myb domain protein 118 (.1) Lus10022256 [exp] 150 / 8e-42 AT3G27785 175 / 2e-50 PLANT GROWTH ACTIVATOR 37, myb domain protein 118 (.1) Lus10025351 [exp] 147 / 8e-40 AT3G09370 456 / 8e-157 myb domain protein 3R3, myb domain protein 3r-3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G250000 [exp] 238 / 6e-75 AT5G58850 221 / 7e-67 myb domain protein 119 (.1) Potri.009G044100 [exp] 237 / 4e-74 AT5G58850 224 / 5e-68 myb domain protein 119 (.1) Potri.012G082000 [exp] 189 / 5e-56 AT4G18770 268 / 2e-85 myb domain protein 98 (.1) Potri.015G077700 [exp] 187 / 2e-55 AT4G18770 300 / 4e-98 myb domain protein 98 (.1) Potri.005G118500 [exp] 184 / 2e-54 AT4G18770 234 / 2e-72 myb domain protein 98 (.1) Potri.001G347200 [exp] 184 / 2e-54 AT3G27785 223 / 8e-68 PLANT GROWTH ACTIVATOR 37, myb domain protein 118 (.1) Potri.006G085600 [exp] 148 / 5e-40 AT5G02320 477 / 9e-164 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3R5, myb domain protein 3r-5 (.1.2) Potri.006G241700 [exp] 144 / 7e-38 AT5G11510 696 / 0.0 myb domain protein 3R4, myb domain protein 3r-4 (.1.2) Potri.018G038000 [exp] 142 / 2e-37 AT4G32730 748 / 0.0 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) Potri.014G079300 [exp] 137 / 5e-36 AT4G32730 266 / 5e-80 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10040684 pacid=23157882 polypeptide=Lus10040684 locus=Lus10040684.g ID=Lus10040684.BGIv1.0 annot-version=v1.0 ATGAGAAACAGAAACCCTAATGACGTGGCAGCAGCCAGGGAGGGTACGATGAAGAAGAAGAAGAACACTAATAAGGGATCAGTAGTGGTGAAGAAGAGAC AGTCGTCTTGTTATGCGGCGTTGATCAAAGGACAGTGGACTGAAGATGAAGACAGGAAGCTGATAAGGCTGGTGAAGCAATTCGGGATAAGGAAATGGGC TGAGATTGCTCAGCGGCTTTCCGGTCGAGCCGGGAAGCAGTGTAGGGAGAGATGGCACAACCATTTGCGCCCCGATATCAAGAAAGAAGGTTGGAGTGAA GAGGAAGAAAGGATAATGGTGGACGCCCATGCAAAGATTGGCAACCGCTGGGCTGAGATTGCAAAGCTGATTCCGGGGAGGACTGAGAATGCAATTAAAA ACCACTGGAACGCCACCAAACGCCGTCAGAACTCACGCCGTAAGCATCCCAAATCCAAGTCAACGGAAGCTTCGACCAATGTTACCAACGGCGCCGTCAA ACCGCAATCGTCGTCCTCGTCCATTCTCCAAGACTACATCCGTAGCAAAACCCTACAACTCAACCAACAACCCAACACCACTTCAGCTACTCCTTCGTCC ACGTCATCCCGCGGAGATGGAGACGGAGACGGAGGATCTCTGCTCCCTTCTCTGTCGGAGTCCGACGAGGAGCTTCTCTTCATGCAGAACTTATTTGCCA GTAAGCCGTCGGATGCTGGGCACGTGGATGATAGCAACGGCCGTGATCAGCCAGGGTTTATAAATGCTGGTGGGATGATTGTAAGAGATTGTAGTCATCA TGCAGCCACGTCATCTAGGCACGGCCATCATCATCTCTATTCGGATCTGTACGTGTCGTATTTGCTGAATGGAGGGGCCAGCTATGCGTCCAGCTCAGCT TCGTGTGATGCTGACAAGGCGGAGGATGGAGGAATGGTAAGCTTGGAGATGATTGATCATCGTCATGGTGGGAGCAACAAGAAGGAGATGGATTTGATTG AGATGCTCTCTTCTACTGCTAGCTAG
AA sequence Show only first row Show all	>Lus10040684 pacid=23157882 polypeptide=Lus10040684 locus=Lus10040684.g ID=Lus10040684.BGIv1.0 annot-version=v1.0 MRNRNPNDVAAAREGTMKKKKNTNKGSVVVKKRQSSCYAALIKGQWTEDEDRKLIRLVKQFGIRKWAEIAQRLSGRAGKQCRERWHNHLRPDIKKEGWSE EEERIMVDAHAKIGNRWAEIAKLIPGRTENAIKNHWNATKRRQNSRRKHPKSKSTEASTNVTNGAVKPQSSSSSILQDYIRSKTLQLNQQPNTTSATPSS TSSRGDGDGDGGSLLPSLSESDEELLFMQNLFASKPSDAGHVDDSNGRDQPGFINAGGMIVRDCSHHAATSSRHGHHHLYSDLYVSYLLNGGASYASSSA SCDADKAEDGGMVSLEMIDHRHGGSNKKEMDLIEMLSSTAS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58850	MYB	ATMYB119	myb domain protein 119 (.1)		Lus10040684 [exp]	0	1
AT4G33920			Protein phosphatase 2C family ...		Lus10000700 [exp]	3.2	1.0000
AT1G66950		ABCG39, PDR11, ...	ATP-binding cassette G39, plei...		Lus10006277 [exp]	4.5	1.0000
AT2G29670			Tetratricopeptide repeat (TPR)...		Lus10025981 [exp]	5.5	1.0000
AT5G51740			Peptidase family M48 family pr...		Lus10032437 [exp]	6.3	1.0000
AT1G69940		ATPPME1	Pectin lyase-like superfamily ...		Lus10016711 [exp]	7.1	1.0000
AT4G20060		EMB1895	EMBRYO DEFECTIVE 1895, ARM rep...		Lus10038371 [exp]	7.7	1.0000
AT3G06920			Tetratricopeptide repeat (TPR)...		Lus10038657 [exp]	8.4	1.0000
					Lus10026426 [exp]	9.2	0.9602
AT1G01450			Protein kinase superfamily pro...		Lus10041113 [exp]	9.4	1.0000
AT5G22460			alpha/beta-Hydrolases superfam...		Lus10004882 [exp]	9.5	1.0000

Compare expression of checked genes

Lus10040684 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.