Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58870 929 / 0 FTSH9 FTSH protease 9 (.1) AT3G47060 922 / 0 FTSH7 FTSH protease 7 (.1) AT1G50250 343 / 6e-107 FTSH1 FTSH protease 1 (.1) AT1G06430 336 / 2e-104 FTSH8 FTSH protease 8 (.1) AT2G30950 334 / 1e-103 FTSH2, VAR2 VARIEGATED 2, FtsH extracellular protease family (.1) AT5G42270 334 / 2e-103 FTSH5, VAR1 VARIEGATED 1, FtsH extracellular protease family (.1) AT5G15250 314 / 4e-96 FTSH6, ATFTSH6 FTSH protease 6 (.1.2) AT1G07510 298 / 7e-89 FTSH10 FTSH protease 10 (.1) AT2G29080 295 / 1e-87 FTSH3 FTSH protease 3 (.1) AT2G26140 270 / 2e-79 FTSH4 FTSH protease 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018210 [exp] 1392 / 0 AT5G58870 1049 / 0.0 FTSH protease 9 (.1) Lus10005868 [exp] 1109 / 0 AT5G58870 1105 / 0.0 FTSH protease 9 (.1) Lus10001203 [exp] 1095 / 0 AT5G58870 1093 / 0.0 FTSH protease 9 (.1) Lus10012277 [exp] 342 / 3e-109 AT1G50250 935 / 0.0 FTSH protease 1 (.1) Lus10021824 [exp] 347 / 8e-108 AT5G42270 934 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10016003 [exp] 341 / 6e-106 AT5G42270 1129 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10001054 [exp] 331 / 2e-102 AT2G30950 1154 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Lus10001420 [exp] 331 / 2e-101 AT2G30950 1155 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Lus10034572 [exp] 291 / 1e-88 AT5G42270 791 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G043100 [exp] 1011 / 0 AT5G58870 1039 / 0.0 FTSH protease 9 (.1) Potri.001G249100 [exp] 979 / 0 AT5G58870 997 / 0.0 FTSH protease 9 (.1) Potri.005G249200 [exp] 345 / 1e-107 AT5G42270 1077 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Potri.002G012000 [exp] 344 / 4e-107 AT5G42270 1094 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Potri.002G215100 [exp] 333 / 3e-103 AT2G30950 1040 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Potri.014G139500 [exp] 333 / 8e-103 AT2G30950 1057 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Potri.017G084000 [exp] 317 / 2e-97 AT5G15250 959 / 0.0 FTSH protease 6 (.1.2) Potri.009G033600 [exp] 299 / 3e-89 AT1G07510 1114 / 0.0 FTSH protease 10 (.1) Potri.016G099800 [exp] 295 / 1e-87 AT2G29080 1123 / 0.0 FTSH protease 3 (.1) Potri.006G227700 [exp] 280 / 3e-83 AT2G26140 1066 / 0.0 FTSH protease 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [flax] [poplar] Peptidase_MA PF01434 [flax] [poplar] Peptidase_M41 Peptidase family M41 CL0126 [flax] [poplar] PF06480 [flax] [poplar] FtsH_ext FtsH Extracellular CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10040695 pacid=23157792 polypeptide=Lus10040695 locus=Lus10040695.g ID=Lus10040695.BGIv1.0 annot-version=v1.0 ATGGCGTCGATAGTTGAAACTCTGTTGCCGGCTTCGCACATCAGGTTTCCCGCGAATTCCAACCGTAGGTATCGTTGTCCTCCTCATTCTAGGTTTCCTC ACGCTGTTAACTTGCGTAATGGATCTTTATCGTGCGGAGCTCGGCGAGGCTCCAGTCTATGCGGAAATAGGGTGTCATGGAGGAGTTGTAGATTGAGAGA GCATAGAATATCGGCGAATTGTCAGGACGGCAGCGATTCCACGGCGAGCTCAAGCGAGCATAGAACGGAAACTGATGTTCAGCAGCAGGCTAGCAGTACG GATACGACGCCGAGTACGGGTCCGAACCCGAGGAGAAAGGAGAAGCAAGAGAAAGGAGGAGAGTGGTGGTGGTGGTGGAAAGGACAAGATTGGAAATGGC AGCCATTAATAGAAGCTCATGAGGTTGGGGTGTTGCTTTTGCAATTGGGGATTGTTATGACCGTTACGAGGCTGTTGCGGCCTGCGATTCCGTTACCGGG CTCGGACCCGAGACTGCAGACTACTACTGTTAGTGTACCGTACAGCGAATTTTTAAGCAAGATTAATAGCAATAAGGTGGAGAAAGTGGAGGTTGACGGT GTGCATACTATGTTTGTGCTGAAAAACGATGGAGCTGGTGAATCCGAGGGAACGGTTAATGGTAAGTGGCAGGATTCGGAGTCTTTGTTGAGGAGCCTGG CACCGACTACGAAAAGGATTGTTTACACAACTACTAGACCTAGTGACATCAAGACTCCGTATGAGAAGATGGTTGAGAATCAGGTGGAGTTTGGATCGCC TGATAATGAGTCTGGTGGATTCTTTAACTCAGCTATGATAGGTTTTTTATATCTCCTTGGGATAGCTGTATTTCTCTACAGGTTCCCTATTAGCTTTTCT CAGCATTCAACTGGTCAGATTAGGAACCGGAAATCTGGGGGTTCTGGAGGTTCAAAAGGTGCTGAGCAAGGGGATACAATTACGTTTGCTGATGTTGCTG GTGTCGGAGAGGGTAAGGAAGAGTTGGAAGAAATAGTGGAATTTCTCAAGAATCCGGACAGGTACATAAGAGTTGGTGCCCGTCCTCCACGGGGTGTTCT GCTGGTTGGTCTTCCTGGTACGGGAAAGACCCTTCTGGCAAAGGCTGTTGCTGGAGAAGCTGAAGTCCCTTTTATAAGCTGTTCAGCTAGTGAGTTTGTG GAGTTATATGTTGGAATGGGTGCTTCCCGAGTAAGAGATCTGTTTGCCCGAGCTAAGAAGGAGGCCCCATCAATTATATTTATTGATGAGATTGATGCTG TGGCAAAAAGTCGTGATGGCAAGTTTCGCATTGTCAGCAATGATGAGCGGGAGCAAACTTTAAACCAGTTGCTTACTGAAATGGATGGATTTGATAGCAA CTCTGCTGTAATTGTTCTCGGAGCCACCAATCGCTCAGATGTACTAGATCCTGCACTTCGCAGACCTGGAAGATTTGATCGAATAGTCACGGTGGAAGCA CCTGATAGGAATGGAAGAGATGCCATTTTGAAAGTGCATGCTACCAAGAAGGAGCTTCCTTTAGGCAAGGATGTCAACCTCAGTGACATTGCGTCCATGA CCACTGGATTCACTGGGGCTGATCTTGCTAATCTAGTAAATGAAGCTGCTCTGTTGGCTGGAAGGAAAAGTAAATCAGTAGTAGAGAAAATTGATTTCAT CGAGGCAGTAGAGCGGTCTATAGCTGGCATAGAGAAGAAAACAGCAAAGCTGCAAGGGAGTGAGAGGGCTGTTGTTGCACGACATGAAGCGGGTCATGCA GTTGTAGGCACTGCTGTTGCTAGTCTCCTTCCTGGACAGCCACGTGTGGAGAAGCTAAGCATTTTACCGAGAACCGGAGGTGCTTTGGGCTTTACATATA CACCCCCAACAAATGAAGACAGGCATTTACTCTTCATCGATGAATTACAAGGTCGCTTGGTCACCCTTCTTGGAGGACGTGCAGCAGAAGAAGTCGTGTA CTCTGGCCGTGTATCTACCGGCGCAATAGATGATATCCGGCGAGCTACAGACATGGCATACAAGGCAATAGCTGAATATGGTCTCAATCAAACCATTGGT CCTGTATCCGTGGGAACACTATCCGGAGGTGACGAGTCTGGAGGATGGGGAAGTGACCAGGGTCATCTTGTTGATATGGTACAAAAGGAGGTACAGACAT CACTACAATCCGCATTAGATGTGGCGATGTGCGTTTTGCGAGCTAATGCCACCGTCTTGGAAGGGCTCGGTGCTCATCTCGAAGAGAATGAGAAAGTAGA AGGTGAAGCACTGCAGGAATGGCTGAAACTGGTAGTTGCACCAGAGGAGCTGGCTTCATTTTTAAGAGGCAAGCAAGCATCTCTCCTTCCTCTGTCATGA
AA sequence Show only first row Show all	>Lus10040695 pacid=23157792 polypeptide=Lus10040695 locus=Lus10040695.g ID=Lus10040695.BGIv1.0 annot-version=v1.0 MASIVETLLPASHIRFPANSNRRYRCPPHSRFPHAVNLRNGSLSCGARRGSSLCGNRVSWRSCRLREHRISANCQDGSDSTASSSEHRTETDVQQQASST DTTPSTGPNPRRKEKQEKGGEWWWWWKGQDWKWQPLIEAHEVGVLLLQLGIVMTVTRLLRPAIPLPGSDPRLQTTTVSVPYSEFLSKINSNKVEKVEVDG VHTMFVLKNDGAGESEGTVNGKWQDSESLLRSLAPTTKRIVYTTTRPSDIKTPYEKMVENQVEFGSPDNESGGFFNSAMIGFLYLLGIAVFLYRFPISFS QHSTGQIRNRKSGGSGGSKGAEQGDTITFADVAGVGEGKEELEEIVEFLKNPDRYIRVGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFV ELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSRDGKFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRSDVLDPALRRPGRFDRIVTVEA PDRNGRDAILKVHATKKELPLGKDVNLSDIASMTTGFTGADLANLVNEAALLAGRKSKSVVEKIDFIEAVERSIAGIEKKTAKLQGSERAVVARHEAGHA VVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPPTNEDRHLLFIDELQGRLVTLLGGRAAEEVVYSGRVSTGAIDDIRRATDMAYKAIAEYGLNQTIG PVSVGTLSGGDESGGWGSDQGHLVDMVQKEVQTSLQSALDVAMCVLRANATVLEGLGAHLEENEKVEGEALQEWLKLVVAPEELASFLRGKQASLLPLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58870		FTSH9	FTSH protease 9 (.1)		Lus10040695 [exp]	0	1
AT5G01510		RUS5	ROOT UV-B SENSITIVE 5, Protein...		Lus10027788 [exp]	1.0	0.8881
AT5G46560			unknown protein		Lus10011046 [exp]	2.4	0.8727
AT2G39190		ATATH8	Protein kinase superfamily pro...		Lus10036522 [exp]	2.8	0.8828
AT4G17740			Peptidase S41 family protein (...		Lus10004402 [exp]	3.5	0.8705
AT3G10350			P-loop containing nucleoside t...		Lus10037982 [exp]	3.5	0.8601
AT2G25870			haloacid dehalogenase-like hyd...		Lus10038133 [exp]	3.9	0.8665
AT3G20730			Tetratricopeptide repeat (TPR)...		Lus10027534 [exp]	6.2	0.8317
AT4G33630		EX1	EXECUTER1, Protein of unknown ...		Lus10007064 [exp]	7.4	0.8431
AT3G46980		PHT4;3	phosphate transporter 4;3 (.1....		Lus10018203 [exp]	7.9	0.8242
AT1G09820			Pentatricopeptide repeat (PPR-...		Lus10032789 [exp]	8.9	0.8544

Compare expression of checked genes

Lus10040695 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.