Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58900 302 / 1e-102 MYB Homeodomain-like transcriptional regulator (.1) AT2G38090 286 / 2e-96 MYB MYB-R Duplicated homeodomain-like superfamily protein (.1) AT5G05790 241 / 7e-79 MYB Duplicated homeodomain-like superfamily protein (.1) AT3G11280 239 / 3e-78 MYB Duplicated homeodomain-like superfamily protein (.1.2) AT5G01200 225 / 1e-72 MYB Duplicated homeodomain-like superfamily protein (.1) AT5G08520 188 / 6e-58 MYB Duplicated homeodomain-like superfamily protein (.1) AT5G04760 174 / 2e-53 MYB Duplicated homeodomain-like superfamily protein (.1) AT1G49010 174 / 3e-52 MYB Duplicated homeodomain-like superfamily protein (.1) AT5G23650 152 / 1e-43 MYB Homeodomain-like transcriptional regulator (.1) AT3G10580 124 / 6e-34 MYB Homeodomain-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018209 [exp] 582 / 0 AT5G58900 302 / 9e-103 Homeodomain-like transcriptional regulator (.1) Lus10035518 [exp] 279 / 1e-93 AT2G38090 304 / 1e-103 Duplicated homeodomain-like superfamily protein (.1) Lus10014837 [exp] 226 / 3e-73 AT3G11280 242 / 7e-80 Duplicated homeodomain-like superfamily protein (.1.2) Lus10009884 [exp] 223 / 3e-71 AT3G11280 246 / 4e-81 Duplicated homeodomain-like superfamily protein (.1.2) Lus10028264 [exp] 218 / 5e-70 AT3G11280 221 / 1e-71 Duplicated homeodomain-like superfamily protein (.1.2) Lus10027781 [exp] 208 / 2e-66 AT2G38090 208 / 2e-66 Duplicated homeodomain-like superfamily protein (.1) Lus10041001 [exp] 183 / 5e-56 AT5G08520 354 / 4e-123 Duplicated homeodomain-like superfamily protein (.1) Lus10013447 [exp] 180 / 1e-54 AT5G08520 350 / 2e-121 Duplicated homeodomain-like superfamily protein (.1) Lus10041088 [exp] 176 / 5e-54 AT5G04760 233 / 1e-77 Duplicated homeodomain-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G248800 [exp] 370 / 5e-129 AT5G58900 312 / 1e-106 Homeodomain-like transcriptional regulator (.1) Potri.009G042600 [exp] 364 / 7e-127 AT5G58900 307 / 1e-104 Homeodomain-like transcriptional regulator (.1) Potri.016G112300 [exp] 305 / 2e-103 AT2G38090 358 / 9e-125 Duplicated homeodomain-like superfamily protein (.1) Potri.006G097300 [exp] 304 / 3e-103 AT2G38090 355 / 2e-123 Duplicated homeodomain-like superfamily protein (.1) Potri.010G193000 [exp] 261 / 2e-86 AT2G38090 258 / 2e-85 Duplicated homeodomain-like superfamily protein (.1) Potri.008G064200 [exp] 247 / 5e-81 AT5G05790 267 / 3e-89 Duplicated homeodomain-like superfamily protein (.1) Potri.007G076200 [exp] 197 / 1e-61 AT5G08520 293 / 6e-99 Duplicated homeodomain-like superfamily protein (.1) Potri.005G087700 [exp] 195 / 9e-61 AT5G08520 304 / 2e-103 Duplicated homeodomain-like superfamily protein (.1) Potri.012G060300 [exp] 191 / 4e-59 AT1G49010 217 / 3e-69 Duplicated homeodomain-like superfamily protein (.1) Potri.010G240800 [exp] 179 / 2e-55 AT5G04760 232 / 3e-77 Duplicated homeodomain-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10040696 pacid=23157915 polypeptide=Lus10040696 locus=Lus10040696.g ID=Lus10040696.BGIv1.0 annot-version=v1.0 ATGAGGTGGGAAATGGAAGTTCTGTCACCGGCATCGTATCTATCGAGCACTGACAACATGTTAATTGAAGACGGGAAAATGACGACGAAATGGACTCGAG CGGAGAACAAGCTGTTCGAGAACGCTCTGGCTCTCTACGACAAGGAAACCCCGGACAGGTGGCAGAAGGTGGCGGCTCTGATTCCTGGAAAAACAGTGGG AGACGTGATCAATCAGTACAAGGAATTGGAAGCCGATGTTAGCAGTATAGAGGCAGGGCTGATTCCGATTCCAGGATACTGCGCTGCTTCTCCTTTCACT CTGGAGTGGGTCAGTAGCAACGGATTCGACGGATTCAAGCAGTCTTACGGCCTCACCGGGAAGAGATCTTCCTCCGGCGGCCGGACTCCCGATCAGGAGA GAAAGAAAGGCGTTCCCTGGACGGAGGAAGAGCATAAGCTGTTTCTGATGGGATTGAAGAAGTACGGGAAGGGAGATTGGAGGAACATCTCTCGCAATTT CGTGGTGACGAGGACGCCTACTCAAGTGGCTAGCCATGCTCAGAAGTATTTCATCAGGCAGCTATCTGGAGGGAAAGACAAGAGGAGAGCAAGCATCCAT GATATCACCACTGTGAATCTCAACGACACTACTAGAAGTTCTAATTCTCCAGACAGTAGTAAGCAAGGTTCTTCACCTGATCAGTCAATGATGGGTGGTA CATTCCAGTGGAACACTCACCATAGAGTCGGCGGAGCAGCAGCAGGAGCAGCCATGGCTTTTGGTTCAACCCATGGAGGTAACAACAACATGTTCATTTC CCCTCCTTATGGTGGATTCAACAGCAGCTCTTATACTGGCGGCGTCAAAACTGAAGGTGGTTATGATGAAGGAAGCATGGTTTTCCAGATGCAATCTGCA GCACAGAGCTACCCTCATGCTTGA
AA sequence Show only first row Show all	>Lus10040696 pacid=23157915 polypeptide=Lus10040696 locus=Lus10040696.g ID=Lus10040696.BGIv1.0 annot-version=v1.0 MRWEMEVLSPASYLSSTDNMLIEDGKMTTKWTRAENKLFENALALYDKETPDRWQKVAALIPGKTVGDVINQYKELEADVSSIEAGLIPIPGYCAASPFT LEWVSSNGFDGFKQSYGLTGKRSSSGGRTPDQERKKGVPWTEEEHKLFLMGLKKYGKGDWRNISRNFVVTRTPTQVASHAQKYFIRQLSGGKDKRRASIH DITTVNLNDTTRSSNSPDSSKQGSSPDQSMMGGTFQWNTHHRVGGAAAGAAMAFGSTHGGNNNMFISPPYGGFNSSSYTGGVKTEGGYDEGSMVFQMQSA AQSYPHA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58900	MYB		Homeodomain-like transcription...		Lus10040696 [exp]	0	1
AT5G58900	MYB		Homeodomain-like transcription...		Lus10018209 [exp]	1.0	0.8434
AT2G16770	bZIP	bZIP23	Basic-leucine zipper (bZIP) tr...		Lus10027847 [exp]	9.2	0.8007
AT1G67330			Protein of unknown function (D...		Lus10006415 [exp]	9.9	0.8298
AT1G27190			Leucine-rich repeat protein ki...		Lus10013288 [exp]	11.7	0.8074
AT5G49100			unknown protein		Lus10006504 [exp]	14.7	0.7612
AT3G13110		SAT-M, SAT-A, S...	SERINE ACETYLTRANSFERASE 3, SE...		Lus10040503 [exp]	15.5	0.7974
AT4G28230			unknown protein		Lus10033724 [exp]	16.5	0.7904
AT2G23200			Protein kinase superfamily pro...		Lus10012101 [exp]	16.5	0.7917
AT5G40382			Cytochrome c oxidase subunit V...		Lus10008765 [exp]	17.9	0.8002
AT2G27770			Plant protein of unknown funct...		Lus10009405 [exp]	26.3	0.7099

Compare expression of checked genes

Lus10040696 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.