Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11320 143 / 1e-42 Nucleotide-sugar transporter family protein (.1) AT5G05820 139 / 2e-41 Nucleotide-sugar transporter family protein (.1) AT1G12500 115 / 2e-31 Nucleotide-sugar transporter family protein (.1) AT5G04160 104 / 6e-28 Nucleotide-sugar transporter family protein (.1) AT3G10290 104 / 2e-27 Nucleotide-sugar transporter family protein (.1) AT1G21870 56 / 6e-10 GONST5 golgi nucleotide sugar transporter 5 (.1) AT1G77610 54 / 2e-09 EamA-like transporter family protein (.1) AT5G25400 47 / 7e-07 Nucleotide-sugar transporter family protein (.1) AT1G06890 47 / 1e-06 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) AT2G30460 46 / 2e-06 Nucleotide/sugar transporter family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016446 [exp] 168 / 2e-52 AT5G05820 508 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10040234 [exp] 139 / 4e-41 AT3G11320 527 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10028255 [exp] 135 / 1e-39 AT3G11320 523 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10009878 [exp] 134 / 2e-39 AT3G11320 548 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10014832 [exp] 134 / 7e-39 AT3G11320 530 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10042039 [exp] 112 / 9e-31 AT3G10290 526 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10018043 [exp] 112 / 2e-30 AT3G10290 528 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10006684 [exp] 105 / 2e-28 AT1G12500 439 / 2e-156 Nucleotide-sugar transporter family protein (.1) Lus10007029 [exp] 103 / 2e-27 AT1G12500 457 / 2e-162 Nucleotide-sugar transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G040800 [exp] 149 / 4e-45 AT5G05820 472 / 2e-169 Nucleotide-sugar transporter family protein (.1) Potri.008G063400 [exp] 147 / 2e-44 AT3G11320 566 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.010G194100 [exp] 147 / 3e-44 AT3G11320 572 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.001G247600 [exp] 143 / 1e-42 AT3G11320 476 / 4e-171 Nucleotide-sugar transporter family protein (.1) Potri.003G118000 [exp] 117 / 2e-32 AT1G12500 503 / 4e-180 Nucleotide-sugar transporter family protein (.1) Potri.016G043200 [exp] 106 / 1e-28 AT5G04160 512 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.006G046600 [exp] 105 / 2e-28 AT5G04160 503 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.001G114100 [exp] 106 / 3e-28 AT1G12500 483 / 8e-172 Nucleotide-sugar transporter family protein (.1) Potri.005G177200 [exp] 52 / 2e-08 AT1G77610 561 / 0.0 EamA-like transporter family protein (.1) Potri.001G394500 [exp] 50 / 9e-08 AT3G14410 496 / 5e-178 Nucleotide/sugar transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF03151 [flax] [poplar] TPT Triose-phosphate Transporter family
Representative CDS sequence Show only first row Show all	>Lus10040710 pacid=23157777 polypeptide=Lus10040710 locus=Lus10040710.g ID=Lus10040710.BGIv1.0 annot-version=v1.0 ATGGCTCGCCAAGCTAGACACGAGCTAACACTTTCTACCTCGAGCACAGGAGAAGCTCCATTCGATGAACCTGCTGATGTACATGGCACCAGTAGCTGTC GCTTTCCTTCTACCGACGGCTGTGATAATGGAAACAAACGTCATCGGAATCACAATAGCACAAGCAAAGACGACAAGAGGTTCATATTTTACCTGCTCTT CAATGCTTCCCTTTCCTATCTGGTAAACTTGACCAACTTCCTCGTCACCAAGCACACCAGCGCCTCGACTCTCCAGGTGCTGGGGAATGCAAAGGGTGCA GTGGCGGTAGTACTGTCGATTCTGATATTCAGGAATCCGGTGTCGGTGACCGGAATGTTGGGATACGGTGTGACTGTGTTTGGTGTCATCCTATACAACG AGGCCAAGAAAAGAGCCAAGTCATGA
AA sequence Show only first row Show all	>Lus10040710 pacid=23157777 polypeptide=Lus10040710 locus=Lus10040710.g ID=Lus10040710.BGIv1.0 annot-version=v1.0 MARQARHELTLSTSSTGEAPFDEPADVHGTSSCRFPSTDGCDNGNKRHRNHNSTSKDDKRFIFYLLFNASLSYLVNLTNFLVTKHTSASTLQVLGNAKGA VAVVLSILIFRNPVSVTGMLGYGVTVFGVILYNEAKKRAKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11320			Nucleotide-sugar transporter f...		Lus10040710 [exp]	0	1
AT5G26250			Major facilitator superfamily ...		Lus10010532 [exp]	2.4	0.7239
AT5G55840			Pentatricopeptide repeat (PPR)...		Lus10038697 [exp]	15.1	0.6776
AT2G30480			unknown protein		Lus10019109 [exp]	69.9	0.6425
AT5G59530			2-oxoglutarate (2OG) and Fe(II...		Lus10041230 [exp]	118.6	0.6437
AT3G23600			alpha/beta-Hydrolases superfam...		Lus10000665 [exp]	139.1	0.6200

Compare expression of checked genes

Lus10040710 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.