Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29340 75 / 2e-17 NAD-dependent epimerase/dehydratase family protein (.1.2.3) AT2G29300 75 / 8e-17 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G30670 73 / 3e-16 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29150 73 / 5e-16 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29320 72 / 5e-16 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G07450 71 / 1e-15 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29310 71 / 2e-15 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G29170 66 / 8e-15 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G07440 68 / 2e-14 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G29290 67 / 4e-14 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016498 [exp] 107 / 4e-29 AT5G06060 351 / 7e-123 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040731 [exp] 107 / 5e-29 AT5G06060 308 / 5e-106 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040732 [exp] 106 / 9e-29 AT5G06060 269 / 7e-91 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040735 [exp] 102 / 4e-27 AT5G06060 341 / 4e-119 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016499 [exp] 100 / 2e-26 AT5G06060 337 / 2e-117 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040733 [exp] 98 / 1e-25 AT5G06060 346 / 5e-121 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016497 [exp] 94 / 4e-24 AT5G06060 345 / 1e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040736 [exp] 76 / 3e-17 AT5G06060 382 / 3e-135 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040737 [exp] 72 / 1e-15 AT2G29350 332 / 3e-115 senescence-associated gene 13 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G142600 [exp] 83 / 7e-20 AT2G29290 354 / 3e-124 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.013G026000 [exp] 79 / 3e-18 AT2G29290 362 / 2e-127 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.001G245000 [exp] 79 / 3e-18 AT2G29150 343 / 9e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G039500 [exp] 77 / 2e-17 AT2G29150 351 / 5e-123 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G026100 [exp] 74 / 1e-16 AT2G29150 284 / 5e-97 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G039300 [exp] 74 / 2e-16 AT2G29150 356 / 7e-125 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G089700 [exp] 70 / 6e-15 AT5G06060 320 / 6e-111 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G244900 [exp] 69 / 2e-14 AT2G29260 387 / 4e-135 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G089800 [exp] 69 / 2e-14 AT2G29150 307 / 2e-105 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G059100 [exp] 64 / 6e-13 AT5G06060 416 / 8e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10040729 pacid=23157658 polypeptide=Lus10040729 locus=Lus10040729.g ID=Lus10040729.BGIv1.0 annot-version=v1.0 ATGGAGGTAGCATTCAAGAGCAAGTTGAGCAATAGGTGGTCTCTCCAAGGACAGACTGCACTTGTCTCTGGTGGTTCCAAAGGACTTGGTGGTGGAAGAA TTGGCAGGACTGGGAGCTATAGTGCACACATGTTCCAGAAATCAGGCAGAACTTATAAGTGTCTGAATGAATGGAAGGAGAAGGGTCTTGAGGTAACTGG TTCTGTCTGTGATGTTACCTCTGCAGCTGAAAGACAGAACCTAATGGAGACCGTGTCGTCCCAGTTCAACGGAAAGCTTAACATCTTGATCAGATCCGCC AAATCCTACTACTTGGATGACGTCAAGTTTCTGAAAGCCGTCGTGGCTCAAACTCCGATGGGGCGAACTGGAAGGCCGGAGGAGGCAGCCGGCTTGACGG CATTATTCTTTTATTGCAACATGTTCATCTCCTCATGA
AA sequence Show only first row Show all	>Lus10040729 pacid=23157658 polypeptide=Lus10040729 locus=Lus10040729.g ID=Lus10040729.BGIv1.0 annot-version=v1.0 MEVAFKSKLSNRWSLQGQTALVSGGSKGLGGGRIGRTGSYSAHMFQKSGRTYKCLNEWKEKGLEVTGSVCDVTSAAERQNLMETVSSQFNGKLNILIRSA KSYYLDDVKFLKAVVAQTPMGRTGRPEEAAGLTALFFYCNMFISS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29340			NAD-dependent epimerase/dehydr...		Lus10040729 [exp]	0	1

Compare expression of checked genes

Lus10040729 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.